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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5941#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1301 fasta sequence
[CCGGCGCTCTGCACGTTTTTAACACAAAGCCAAGCACACGCACATACACGCAGAGAAACTTATCACTACTTGTTACAACCCCTTATTACTACTAGTACTACCAATTACTAACTACTAACTCTATCACTGCTACTACACGGGCAAGAAAGAAAGAAAGAAGAAGTTGAAAATCCCGTATCTATTACAACTTCTGATCGATCGATCGATGTTACACCACCACCATCATTCATTCCATGTACATTTTTGTTGAAAGTGTGGTTTCATAGTTTGTGTGTTTTTTTGTGTTGATCCCTCCAGTTTAGGGATCTGCCTCTGATCTGCTGGCAGCAGAAATCCGCACAATGCATCTCTCCTTGCCACGTCTTTCTTTTCACACACACACAGCCACCCACAGTTAGATTGTTAGTCGAATTAAGCGCGTATTAAGCGTGTCCGTACGTGTGTGTGTTCAATGGTTCAACCGAGTCTAATGCTCAAGGCACAGCACGCACCCACTGGTTTGAACCACGTCCCCAACCACGGGGGGATCGAGAAATGCTTTCCAAGGACGTATCTTAATCGAGGATGGACGGAATGAATTGCAACTTAACAAAAAACCGATGCACTATCCCATCCCGATTTTGCCAAAAACAATCCACTCACCAACCAGAGCAAGGCCAGCTTTTCTATGTTTAGCTTTCGGCCCGTGGTTCGTTTTTTTTTTGTTTTCAGTACCAGAAGGAGGATATGCTAAAAGTAGGGGACGAACGCCCTAGTAGCGAACATGCATTAGAATTCGAAGTAGGTTACTCTGCTCCGTTCATTTCAACCTTCCTCTTCCACCCGCATGTGTGGCAATGTGTGGCAATGTGGAGCCACCAAATCCTCACCCCCAGCTAGTAGGTGTGCGTGTGTGTGTGTGTGTGGGTTCGGTTTAGGATAAGTTGTTTCTAGTAGCGAAATGGAAGCTCTAAACTAAGCGTCAATAGCGAAAGGTATTACAACCAACAAAAAATAAATCGATTCACCACCACATAAAGCTGCGTTGCACCCTTCTCACACCTGTTCACGTATATACACACACACACACACACACATAGACCCCCATCATCTCTATCTCTCTCTTTCGTGCATAACCTATAAGAGGGCAAGAAAAAAAAACACTCACACATACACACACAGAGAACACAAGCAAGCAAGCAAGCCAGAGAAAGTAGTTCAAATGAAAACGCAAAAAAAGAGCAACTCTATCATAACGTGGTTATAAGAGCAAAACAAACAAACAAAAAAAGCGAGTCAAAACAAAAAATCGTGATTACAAA]
[+] EMBL BM583431 [CCGGCGCTCTGCACGTTTTTAACACAAAGCCAAGCACACGCACATACACGCAGAGAAACTTATCACTACTTGTTACAACCCCTTATTACTACTAGTACTACCAATTACTAACTACTAACTCTATCACTGCTACTACACGGGCAAGAAAGAAAGAAAGAAGAAGTTGAAAATCCCGTATCTATTACAACTTCTGATCGATCGATCGATGTTACACCACCACCATCATTCATTCCATGTACATTTTTGTTGAAAGTGTGGTTTCATAGTTTGTGTGTTTTTTTGTGTTGATCCCTCCAGTTTAGGGATCTGCCTCTGATCTGCTGGCAGCAGAAATCCGCACAATGCATCTCTCCTTGCCACGTCTTTCTTTTCACACACACACAGCCACCCACAGTTAGATTGTTAGTCGAATTAAGCGCGTATTAAGCGTGTCCGTACGTGTGTGTGTTCAATGGTTCAACCGAGTCTAATGCTCAAGGCACAGCACGCACCCACTGGTTTGAACCACGTCCCCAACCACGGGGGGATCGAGAAATGCTTTCCAA ]
[+] EMBL BM655107 [ ccGCACGCACCCACTGGTTTGAACCACGTCCCCAACCAC GGGGGATCGAGAAATGC TTCCAAGGACGTATCTTAATCGAGGATGGACGGAATGAATTGCAACTTAACAAAAAACCGATGCACTATCCCATCCCGATTTTGCCAAAAACAATCCACTCACCAACCAGAGCAAGGCCAGCTTTTCTATGTTTAGCTTTCGGCCCGTGGTTCGTTTTTTTTTTGTTTTCAGTACCAGAAGGAGGATATGCTAAAAGTAGGGGACGAACGCCCTAGTAGCGAACATGCATTAGAATTCGAAGTAGGTTACTCTGCTCCGTTCATTTCAACCTTCCTCTTCCACCCGCATGTGTGGCAATGTGTGGCAATGTGGAGCCACCAAATCCTCACCCCCAGCTAGTAGGTGTGCGTGTGTGTGTGTGTGTGGGTTCGGTTTAGGATAAGTTGTTTCTAGTAGCGAAATGGAAGCTCTAAACTAAGCGTCAATAGCGAAAGGTATTACAACCAACAAAAAATAAATCGATTCACCACCACATAAAGCTGCGTTGCACCCTTCTCACACCTGTTCACGTATATACACACACACACACACACACATAGACCCCCATCATCTCTATCTCTCTCTTTCGTGCATAACCTATAAGAGGGCAAGAAAAAAAAACACTCACACATACACACACAGAGAACACAAGCAAGCAAGCAAGC ]
[+] EMBL BM576525 [ ccGGTTACTCTGCTCCGTTCATTTCAACCTTCCTCTTCCACCCGCATGTGTGGCAATGTGTGGCAATGTGGAGCCACCAAATCCTCACCCCCAGCTAGTAGGTGTGCGTGTGTGTGTGTGTGTGGGTTCGGTTTAGGATAAGTTGTTTCTAGTAGCGAAATGGAAGCTCTAAACTAAGCGTCAATAGCGAAAGGTATTACAACCAACAAAAAATAAATCGATTCACCACCACATAAAGCTGCGTTGCACCCTTCTCACACCTGTTCACGTATATACACACACACACACACACACATAGACCCCCATCATCTCTATCTCTCTCTTTCGTGCATAACCTATAAGAGGGCAAGAAAAAAAAACACTCACACATACACACACAGAGAACACAAGCAAGCAAGCAAGCCAGAGAAAGTAGTTCAAATGAAAACGCAAAAAAAGAGCAACTCTATCATAACGTGGTTATAAGAGCAAAACAAACAAACAAAAAAAGCGAGTCAAAACAAAAAATCGTGATTACAAA]
consensusID : consensus_5941#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 624 fasta sequence
[GCCGAATTAATTAAGAATTAGTCGTGTCCCTGTGTGTGTTCAATGGTTCAACCGAGTCTAATGCTCAAGGCACAGCACGCACCCACTGGTTCGATCCACGTCCCCAACCACGGGGGATCGAGAAATGCTTCCAAGGACGTATCTTAGTCGAGGGCGAACGAAATGAATTGCAACTGAACAAAAACCAATGCACCATCTCCCATCCCGATTTTGCCAAAATCATCCACTCACCAACCGAAGCGAGGCCAGCTTTTCTATGTTTAGCTTTCGGCCCGTGGCTCGTTTTTTTGTTTTCGGTATCAGAAGAAGGATATGCTAAGAGTAGACGACGAACGCCCTAGTAGCGAACATGCATTAGAACTCGAATTAGGTTACTCTGCTCCGTTCATTTCACCCTTCCTCATCCACCCGCGTGTGTGGCATGTGTGGCAATGTGGAGCCCCCAAACCCTCACCCCCAGCTAGTAAGTGTGCGTGTGCGTGTGTGTGTGTGGGTTCGGTTTAGGATAAGTTGATTCTATTAGCGAAATGGAAGCTCTAAACTAAGCGTCAATAGCGAAAGGTATTACAACCAACAAAAAAAAACGATTCACCACCACATAACGCTGCGTTGCACCCTTTTCAC]
[+] EMBL BX611127 [GCCGAATTAATTAAGAATTAGTCGTGTCCCTGTGTGTGTTCAATGGTTCAACCGAGTCTAATGCTCAAGGCACAGCACGCACCCACTGGTTCGATCCACGTCCCCAACCACGGGGGATCGAGAAATGCTTCCAAGGACGTATCTTAGTCGAGGGCGAACGAAATGAATTGCAACTGAACAAAAACCAATGCACCATCTCCCATCCCGATTTTGCCAAAATCATCCACTCACCAACCGAAGCGAGGCCAGCTTTTCTATGTTTAGCTTTCGGCCCGTGGCTCGTTTTTTTGTTTTCGGTATCAGAAGAAGGATATGCTAAGAGTAGACGACGAACGCCCTAGTAGCGAACATGCATTAGAACTCGAATTAGGTTACTCTGCTCCGTTCATTTCACCCTTCCTCATCCACCCGCGTGTGTGGCATGTGTGGCAATGTGGAGCCCCCAAACCCTCACCCCCAGCTAGTAAGTGTGCGTGTGCGTGTGTG ]
[+] EMBL BX608087 [ ACTGGTTCGAACCACGTCCCCAACCACGGGGGATCGAGAAATGCTTCCAAGGACGTATCTTAGTCGAGGGCGAACGAAATGAATTGCAACTGAACAAAAACCAATGCACCATCTCCCATCCCGATTTTGCCAAAATCATCCACTCACCAACCGAAGCGAGGCCAGCTTTTCTATGTTTAGCTTTCGGCCCGTGGCTCGTTTTTTTGTTTTCGGTATCAGAAGAAGGATATGCTAAGAGTAGACGACGAACGCCCTAGTAGCGAACATGCATTAGAACTCGAATTAGGTTACTCTGCTCCGTTCATTTCACCCTTCCTCATCCACCCGCGTGTGTGGCATGTGTGGCAATGTGGAGCCCCCAAACCCTCACCCCCAGCTAGTAGGTGTGCGTGTGCGTGTGTGTGTGTGGGTTCGGTTTAGGATAAGTTGATTCTATTAGCGAAATGGAAGCTCTAAACTAAGCGTCAATAGCGAAAGGTATTACAACCAACAAAAAAAAACGATTCACCACCACATAACGCTGCGTTGCACCCTTTTCAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5941#0 CCGGCGCTCTGCACGTTTTTAACACAAAGCCAAGCACACGCACATACACGCAGAGAAACT 60
consensus_5941#1 ------------------------------------------------------------
consensus_5941#0 TATCACTACTTGTTACAACCCCTTATTACTACTAGTACTACCAATTACTAACTACTAACT 120
consensus_5941#1 ------------------------------------------------------------
consensus_5941#0 CTATCACTGCTACTACACGGGCAAGAAAGAAAGAAAGAAGAAGTTGAAAATCCCGTATCT 180
consensus_5941#1 ------------------------------------------------------------
consensus_5941#0 ATTACAACTTCTGATCGATCGATCGATGTTACACCACCACCATCATTCATTCCATGTACA 240
consensus_5941#1 ------------------------------------------------------------
consensus_5941#0 TTTTTGTTGAAAGTGTGGTTTCATAGTTTGTGTGTTTTTTTGTGTTGATCCCTCCAGTTT 300
consensus_5941#1 ------------------------------------------------------------
consensus_5941#0 AGGGATCTGCCTCTGATCTGCTGGCAGCAGAAATCCGCACAATGCATCTCTCCTTGCCAC 360
consensus_5941#1 ------------------------------------------------------------
consensus_5941#0 GTCTTTCTTTTCACACACACACAGCCACCCACAGTTAGATTGTTAGTCGAATTAAGCGCG 420
consensus_5941#1 ---------------------------------------------GCCGAATTAATTAAG 15
* ******** *
consensus_5941#0 TATTAAGCGTGTCCGTACGTGTGTGTGTTCAATGGTTCAACCGAGTCTAATGCTCAAGGC 480
consensus_5941#1 AATTAGTCGTGTCCCT----GTGTGTGTTCAATGGTTCAACCGAGTCTAATGCTCAAGGC 71
**** ******* * ****************************************
consensus_5941#0 ACAGCACGCACCCACTGGTTTGAACCACGTCCCCAACCACGGGGGGATCGAGAAATGCTT 540
consensus_5941#1 ACAGCACGCACCCACTGGTTCGATCCACGTCCCCAACCACGGGGG-ATCGAGAAATGCTT 130
******************** ** ********************* **************
consensus_5941#0 TCCAAGGACGTATCTTAATCGAGGATGGACGGAATGAATTGCAACTTAACAAAAAACCGA 600
consensus_5941#1 -CCAAGGACGTATCTTAGTCGAGGGCGAACGAAATGAATTGCAACTGAACAAAAA-CCAA 188
**************** ****** * *** ************** ******** ** *
consensus_5941#0 TGCACTATC--CCATCCCGATTTTGCCAAAAACAATCCACTCACCAACCAGAGCAAGGCC 658
consensus_5941#1 TGCACCATCTCCCATCCCGATTTTGCCAAAATCA-TCCACTCACCAACCGAAGCGAGGCC 247
***** *** ******************** ** ************** *** *****
consensus_5941#0 AGCTTTTCTATGTTTAGCTTTCGGCCCGTGGTTCGTTTTTTTTTTGTTTTCAGTACCAGA 718
consensus_5941#1 AGCTTTTCTATGTTTAGCTTTCGGCCCGTGGCTCGTTTTTTT---GTTTTCGGTATCAGA 304
******************************* ********** ****** *** ****
consensus_5941#0 AGGAGGATATGCTAAAAGTAGGGGACGAACGCCCTAGTAGCGAACATGCATTAGAATTCG 778
consensus_5941#1 AGAAGGATATGCTAAGAGTAGACGACGAACGCCCTAGTAGCGAACATGCATTAGAACTCG 364
** ************ ***** ********************************* ***
consensus_5941#0 AAGTAGGTTACTCTGCTCCGTTCATTTCAACCTTCCTCTTCCACCCGCATGTGTGGCAAT 838
consensus_5941#1 AATTAGGTTACTCTGCTCCGTTCATTTCACCCTTCCTCATCCACCCGCGTGTGTGGCA-T 423
** ************************** ******** ********* ********* *
consensus_5941#0 GTGTGGCAATGTGGAGCCACCAAATCCTCACCCCCAGCTAGTAGGTGTGCGTGTG--TGT 896
consensus_5941#1 GTGTGGCAATGTGGAGCCCCCAAACCCTCACCCCCAGCTAGTAAGTGTGCGTGTGCGTGT 483
****************** ***** ****************** *********** ***
consensus_5941#0 GTGTGTGTGGGTTCGGTTTAGGATAAGTTGTTTCTAGTAGCGAAATGGAAGCTCTAAACT 956
consensus_5941#1 GTGTGTGTGGGTTCGGTTTAGGATAAGTTGATTCTATTAGCGAAATGGAAGCTCTAAACT 543
****************************** ***** ***********************
consensus_5941#0 AAGCGTCAATAGCGAAAGGTATTACAACCAACAAAAAATAAATCGATTCACCACCACATA 1016
consensus_5941#1 AAGCGTCAATAGCGAAAGGTATTACAACCAACAAAAA--AAAACGATTCACCACCACATA 601
************************************* *** *****************
consensus_5941#0 AAGCTGCGTTGCACCCTTCTCACACCTGTTCACGTATATACACACACACACACACACACA 1076
consensus_5941#1 ACGCTGCGTTGCACCCTTTTCAC------------------------------------- 624
* **************** ****
consensus_5941#0 TAGACCCCCATCATCTCTATCTCTCTCTTTCGTGCATAACCTATAAGAGGGCAAGAAAAA 1136
consensus_5941#1 ------------------------------------------------------------
consensus_5941#0 AAAACACTCACACATACACACACAGAGAACACAAGCAAGCAAGCAAGCCAGAGAAAGTAG 1196
consensus_5941#1 ------------------------------------------------------------
consensus_5941#0 TTCAAATGAAAACGCAAAAAAAGAGCAACTCTATCATAACGTGGTTATAAGAGCAAAACA 1256
consensus_5941#1 ------------------------------------------------------------
consensus_5941#0 AACAAACAAAAAAAGCGAGTCAAAACAAAAAATCGTGATTACAAA 1301
consensus_5941#1 ---------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||