cluster # 5948

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Anopheles gambiae
cluster # 5948 cluster # 5948 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5948#0 length = 1012 sequences # 3

consensus_5948#1 length = 522 sequences # 2

consensusID : consensus_5948#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1012
fasta sequence

                              [CCGGAAATCGCCGGCATTCGGGTGCTGTACACGGGCGACTTTTCCCGCCAGGAGGATCGGCATTTGATGGCGGCGGAAATTCCGGCCATGCGCCCGGACGTGCTGATCACCGAGTCCACGTACGGAACGCACATACACGAGAAGCGCGAGGATCGTGAGAATCGATTCACCTCGCTCGTGCAAAAGATTGTCCAGCAGGGTGGCCGGTGCTTGATTCCGGTGTTCGCGCTTGGCCGAGCGCAGGAGCTGCTGCTCATACTGGACGAGTACTGGAGT-AAAAT-CGGATCTGCAGGAA--T-CCATCTATT-CGCAT-CTCGCTGGCC-AGAAGTGTATGGCCGTGTACCAGACGTACATCAACGCGATGAACGATAAGATCCGGCGTCAGATCGCCATCAACAATCCGTTTGGTGTTTCGATTCATCTCGAACTTGAAGGGCATCGATCACTTCGACGATGTCGGACCGTGCGTCGTGATGGCGTCGCCCGGCATGATGCAGAGCGGCCTGTCCCGCGAGCTGTTCGAGTCGTGGTGTACCGATCCGAAGAACGGTGTCATCATAGCCGGTTACTGTGTCGAGGGGACGCTAGCCAAGACGATCCTTTTTGAGCCGGAAGAAATCACCAGCATGAACGGCCAGAAGCTGCCACTCAACATGTCCGTGGACTACATTTCCTTCTCCGCACACACGGACTACCAGCAGACGAGCGAATTCATTCGACTGCTGCAACCGACCCACGTGGTGCTGGTGCACGGAGAACAGAACGAGATGGGCCGTCTGAAGTCGGCCCTGATGCGCGAGTACGAAGCCAACCCGAAAGTACAAATTACGTTCCACAACCCGCGCAACACGCAACCGGTAGAGTTGTACTTCCGGGGGGAGAAAACGGCCAAGGTTATGGGAACGCTGGCCGTAGGGGAACCGGCCGATTGTCAGCGATTGAGCGGGGTGTTGGTAAAGCGTGAGTTCAAGTACCACCTGCTCGCACCGACCGATCTGTCCAAGTACACCGACAT]

[+] EMBL BM593626             [CCGGAAATCGCCGGCATTCGGGTGCTGTACACGGGCGACTTTTCCCGCCAGGAGGATCGGCATTTGATGGCGGCGGAAATTCCGGCCATGCGCCCGGACGTGCTGATCACCGAGTCCACGTACGGAACGCACATACACGAGAAGCGCGAGGATCGTGAGAATCGATTCACCTCGCTCGTGCAAAAGATTGTCCAGCAGGGTGGCCGGTGCTTGATTCCGGTGTTCGCGCTTGGCCGAGCGCAGGAGCTGCTGCTCATACTGGACGAGTACTGGAGTCAAAATCCGGATCTGCAGGAAATTCCCATCTATTACGCATCCTCGCTGGCCAAGAAGTGTATGGCCGTGTACCAGACGTACATCAACGCGATGAACGATAAGATCCGGCGTCAGATCGCCATCAACAATCCGTTT GTGTTTCGATTCATCTCGAACTTGAAGGGCATCGATCACTTCGATGATGTCGGACCGTGCGTCGTGATGGCGTCGCCCGGCATGATGCAGAGCGGCCTGTCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL AL934521             [                                                                                                                                                                                                                                                                              gccAGT TAAAT CGGATCTGCAGGAA  T CCATCTATT CGCGT CTCGCTGGCC AGAAATGTATGGCCGTGTACCAGACGTACATCAACGCGATGAACGATAAGATCCGGCGTCAGATTGCCATCAACAATCCGTTTGGTGTTTCGATTCATCTCGAACTTGAAGGGCATCGATCACTTCGACGATGTCGGACCGTGCGTCGTGATGGCGTCGCCCGGCATGATGCAGAGCGGCCTGTCCCGCGAGCTGTTCGAGTCGTGGTGTACCGATCCGAAGAACGGTGTCATCATAGCCGGTTACTGTGTCGAGGGGACGCTAGCCAAGACGATCCTTTTTGAGCCGGAAGAAATCACCAGCATGAACGGCCAGAAGCTGCCACTCAACATGTCCGTGGACT                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL BM583906             [                                                                                                                                                                                                                                                                                                                                                                                                                           ccgGTTTCGATTCATCTCGAACTTGAAGGGCATCGATCACTTCGACGATGTCGGACCGTGCGTCGTGATGGCGTCGCCCGGCATGATGCAGAGCGGTCTGTCCCGCGAGCTGTTCGAGTCGTGGTGTACCGATCCGAAGAACGGCGTCATCATAGCCGGTTACTGTGTCGAGGGGACGCTAGCCAAGACGATTCTGTTTGAGCCGGAAGAAATCACCAGCATGAACGGCCAGAAGCTGCCACTCAACATGTCCGTGGACTACATTTCCTTCTCCGCACACACGGACTACCAGCAGACGAGCGAATTCATTCGACTGCTGCAACCGACCCACGTGGTGCTGGTGCACGGAGAACAGAACGAGATGGGCCGTCTGAAGTCGGCCCTGATGCGCGAGTACGAAGCCAACCCGAAAGTACAAATTACGTTCCACAACCCGCGCAACACGCAACCGGTAGAGTTGTACTTCCGGGGGGAGAAAACGGCCAAGGTTATGGGAACGCTGGCCGTAGGGGAACCGGCCGATTGTCAGCGATTGAGCGGGGTGTTGGTAAAGCGTGAGTTCAAGTACCACCTGCTCGCACCGACCGATCTGTCCAAGTACACCGACAT]




>consensus_5948#0
CCGGAAATCGCCGGCATTCGGGTGCTGTACACGGGCGACTTTTCCCGCCAGGAGGATCGG
CATTTGATGGCGGCGGAAATTCCGGCCATGCGCCCGGACGTGCTGATCACCGAGTCCACG
TACGGAACGCACATACACGAGAAGCGCGAGGATCGTGAGAATCGATTCACCTCGCTCGTG
CAAAAGATTGTCCAGCAGGGTGGCCGGTGCTTGATTCCGGTGTTCGCGCTTGGCCGAGCG
CAGGAGCTGCTGCTCATACTGGACGAGTACTGGAGTAAAATCGGATCTGCAGGAATCCAT
CTATTCGCATCTCGCTGGCCAGAAGTGTATGGCCGTGTACCAGACGTACATCAACGCGAT
GAACGATAAGATCCGGCGTCAGATCGCCATCAACAATCCGTTTGGTGTTTCGATTCATCT
CGAACTTGAAGGGCATCGATCACTTCGACGATGTCGGACCGTGCGTCGTGATGGCGTCGC
CCGGCATGATGCAGAGCGGCCTGTCCCGCGAGCTGTTCGAGTCGTGGTGTACCGATCCGA
AGAACGGTGTCATCATAGCCGGTTACTGTGTCGAGGGGACGCTAGCCAAGACGATCCTTT
TTGAGCCGGAAGAAATCACCAGCATGAACGGCCAGAAGCTGCCACTCAACATGTCCGTGG
ACTACATTTCCTTCTCCGCACACACGGACTACCAGCAGACGAGCGAATTCATTCGACTGC
TGCAACCGACCCACGTGGTGCTGGTGCACGGAGAACAGAACGAGATGGGCCGTCTGAAGT
CGGCCCTGATGCGCGAGTACGAAGCCAACCCGAAAGTACAAATTACGTTCCACAACCCGC
GCAACACGCAACCGGTAGAGTTGTACTTCCGGGGGGAGAAAACGGCCAAGGTTATGGGAA
CGCTGGCCGTAGGGGAACCGGCCGATTGTCAGCGATTGAGCGGGGTGTTGGTAAAGCGTG
AGTTCAAGTACCACCTGCTCGCACCGACCGATCTGTCCAAGTACACCGACAT

consensusID : consensus_5948#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 522
fasta sequence

                              [AGATCGCCGAGNTAGTTACTGTGTC-AGGGGACGCTAGCCCAGACGATCTGTTTGAGCCGGAAGAAATCACCAGCATGAACGGGCAGAAGCTGCCACTCAACATGTCCGTGGACTACATTTCCTTCTCCGC-ACACACGGACTACCAGCA-GACGA-GCGAATTCATTCGACTGCTGCAACCGA-CCCACGTGGTGCTGGTGCACGGAGAACAGAACGAGATGGGCCGTCTGAAGTCGGCCCTGATGCGCGAGTACGAA-GCCAACCC-GAAAGTACAAA-TTACGTTCCACAACCCGCGCAACACGCAACCGGTAGAGTTGTACTTCCGGGGGGAGAAAACGGCCAAGGTTATGGGAACGCTGGCCG-TAGGGGAACCGGCCGATTGTCAG-CGA-TTGAGCGGGGTG-TTGGTAAAGCGTGAGTTCAAGTACCACCTGCTCGCACCGACCGATCTGTCCAAGTACACCGACATGAGCATGTCGAGTCGTGACACAAAAGCAAAGCATTCATTGGCCCGGGTCGACCGTAGTG]

[+] EMBL AL934510             [AGATCGCCGAGNTAGTTACTGTGTC AGGGGACGCTAGCCCAGACGATCTGTTTGAGCCGGAAGAAATCACCAGCATGAACGGGCAGAAGCTGCCACTCAACATGTCCGTGGACTACATTTCCTTCTCCGC ACACACGGACTACCAGCA GACGA GCGAATTCATTCGACTGCTGCAACCGA CCCACGTGGTGCTGGTGCACGGAGAACAGAACGAGATGGGCCGTCTGAAGTCGGCCCTGATGCGCGAGTACGAA GCCAACCC GAAAGTACAAA TTACGTTCCACAACCCGCGCAACACGCAACCGGTAGAGTTGTACTTCCGGGGGGAGAAAACGGCCAAGGTTATGGGAACGCTGGCCG TAGGGGAACCGGCCGATTGTCAG CGA TTGAGCGGGGTG TTGGTAAAGCGTGAGTTCAAGTACCACCTG                                                                                              ]
[+] EMBL AL693969             [     cCCGAGTTAATCACTGTGTCGAGGGGACGCTA  CCAGACGATCTGTATGAGCCGGAAGAAATCACCAGCATGAACGGCCAGAAGCTGCCACTCAACATGTCCGTGGACTACATTTCCTTCTCCGCGACACACGGACTACCAGCACGACGACGCGAATTCATTCGACTGCTGCAACCGATCCCACGTGGTGCTGGTGCACGGAGAACAGAACGAGATGGGCCGTCTGAAGTCGGACCTGATGCGCGAGTACGAAGGCCAACCCTGAAAGTACAAAGTTACGTTCCACAACCCGCGCAACANGCAACCGNTACAGTTGTACTTCCGGGGGGANAAAACGGCCAAGGTTATGGGAACGCTGGCCGTTAGGGGAACCGGCCGATTGTCAGTCGACTTGAGCGGGGTGCTTGGTAAAGCGTGAGTTCAAGTACCACCTGCTCGCACCGACCGATCTGTCCAAGTACACCGACATGAGCATGTCGAGTCGTGACACAAAAGCAAAGCATTCATTGGCCCGGGTCGACCGTAGTG]




>consensus_5948#1
AGATCGCCGAGNTAGTTACTGTGTCAGGGGACGCTAGCCCAGACGATCTGTTTGAGCCGG
AAGAAATCACCAGCATGAACGGGCAGAAGCTGCCACTCAACATGTCCGTGGACTACATTT
CCTTCTCCGCACACACGGACTACCAGCAGACGAGCGAATTCATTCGACTGCTGCAACCGA
CCCACGTGGTGCTGGTGCACGGAGAACAGAACGAGATGGGCCGTCTGAAGTCGGCCCTGA
TGCGCGAGTACGAAGCCAACCCGAAAGTACAAATTACGTTCCACAACCCGCGCAACACGC
AACCGGTAGAGTTGTACTTCCGGGGGGAGAAAACGGCCAAGGTTATGGGAACGCTGGCCG
TAGGGGAACCGGCCGATTGTCAGCGATTGAGCGGGGTGTTGGTAAAGCGTGAGTTCAAGT
ACCACCTGCTCGCACCGACCGATCTGTCCAAGTACACCGACATGAGCATGTCGAGTCGTG
ACACAAAAGCAAAGCATTCATTGGCCCGGGTCGACCGTAGTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5948#0      CCGGAAATCGCCGGCATTCGGGTGCTGTACACGGGCGACTTTTCCCGCCAGGAGGATCGG 60
consensus_5948#1      ------------------------------------------------------------
                                                                                  

consensus_5948#0      CATTTGATGGCGGCGGAAATTCCGGCCATGCGCCCGGACGTGCTGATCACCGAGTCCACG 120
consensus_5948#1      ------------------------------------------------------------
                                                                                  

consensus_5948#0      TACGGAACGCACATACACGAGAAGCGCGAGGATCGTGAGAATCGATTCACCTCGCTCGTG 180
consensus_5948#1      ------------------------------------------------------------
                                                                                  

consensus_5948#0      CAAAAGATTGTCCAGCAGGGTGGCCGGTGCTTGATTCCGGTGTTCGCGCTTGGCCGAGCG 240
consensus_5948#1      ------------------------------------------------------------
                                                                                  

consensus_5948#0      CAGGAGCTGCTGCTCATACTGGACGAGTACTGGAGTAAAATCGGATCTGCAGGAATCCAT 300
consensus_5948#1      ------------------------------------------------------------
                                                                                  

consensus_5948#0      CTATTCGCATCTCGCTGGCCAGAAGTGTATGGCCGTGTACCAGACGTACATCAACGCGAT 360
consensus_5948#1      ------------------------------------------------------------
                                                                                  

consensus_5948#0      GAACGATAAGATCCGGCGTCAGATCGCCATCAACAATCCGTTTGGTGTTTCGATTCATCT 420
consensus_5948#1      ------------------------------------------------------------
                                                                                  

consensus_5948#0      CGAACTTGAAGGGCATCGATCACTTCGACGATGTCGGACCGTGCGTCGTGATGGCGTCGC 480
consensus_5948#1      ------------------------------------------------------------
                                                                                  

consensus_5948#0      CCGGCATGATGCAGAGCGGCCTGTCCCGCGAGCTGTTCGAGTCGTGGTGTACCGATCCGA 540
consensus_5948#1      ------------------------------------------------------------
                                                                                  

consensus_5948#0      AGAACGGTGTCATCATAGCCGGTTACTGTGTCGAGGGGACGCTAGCCAAGACGATCCTTT 600
consensus_5948#1      ------AGATCGCCG-AGNTAGTTACTGTGTC-AGGGGACGCTAGCCCAGACGATC-TGT 51
                               **  *  **   *********** ************** ******** * *

consensus_5948#0      TTGAGCCGGAAGAAATCACCAGCATGAACGGCCAGAAGCTGCCACTCAACATGTCCGTGG 660
consensus_5948#1      TTGAGCCGGAAGAAATCACCAGCATGAACGGGCAGAAGCTGCCACTCAACATGTCCGTGG 111
                      ******************************* ****************************

consensus_5948#0      ACTACATTTCCTTCTCCGCACACACGGACTACCAGCAGACGAGCGAATTCATTCGACTGC 720
consensus_5948#1      ACTACATTTCCTTCTCCGCACACACGGACTACCAGCAGACGAGCGAATTCATTCGACTGC 171
                      ************************************************************

consensus_5948#0      TGCAACCGACCCACGTGGTGCTGGTGCACGGAGAACAGAACGAGATGGGCCGTCTGAAGT 780
consensus_5948#1      TGCAACCGACCCACGTGGTGCTGGTGCACGGAGAACAGAACGAGATGGGCCGTCTGAAGT 231
                      ************************************************************

consensus_5948#0      CGGCCCTGATGCGCGAGTACGAAGCCAACCCGAAAGTACAAATTACGTTCCACAACCCGC 840
consensus_5948#1      CGGCCCTGATGCGCGAGTACGAAGCCAACCCGAAAGTACAAATTACGTTCCACAACCCGC 291
                      ************************************************************

consensus_5948#0      GCAACACGCAACCGGTAGAGTTGTACTTCCGGGGGGAGAAAACGGCCAAGGTTATGGGAA 900
consensus_5948#1      GCAACACGCAACCGGTAGAGTTGTACTTCCGGGGGGAGAAAACGGCCAAGGTTATGGGAA 351
                      ************************************************************

consensus_5948#0      CGCTGGCCGTAGGGGAACCGGCCGATTGTCAGCGATTGAGCGGGGTGTTGGTAAAGCGTG 960
consensus_5948#1      CGCTGGCCGTAGGGGAACCGGCCGATTGTCAGCGATTGAGCGGGGTGTTGGTAAAGCGTG 411
                      ************************************************************

consensus_5948#0      AGTTCAAGTACCACCTGCTCGCACCGACCGATCTGTCCAAGTACACCGACAT-------- 1012
consensus_5948#1      AGTTCAAGTACCACCTGCTCGCACCGACCGATCTGTCCAAGTACACCGACATGAGCATGT 471
                      ****************************************************        

consensus_5948#0      ---------------------------------------------------
consensus_5948#1      CGAGTCGTGACACAAAAGCAAAGCATTCATTGGCCCGGGTCGACCGTAGTG 522