|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5961#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1392 fasta sequence
[GCTCATGCAGAATCGCCCCNGGTTTTCTAAATGGGGGTCATAATATTTTCCCTTATCTTTTACAGACAAAAAAGTGTCTGGTAAATCCAAGGAGGAACAGATAGACGGAGAAAAAGCAAGAGCTGGAAAAACGGCTCCAGGATGTGACGGGTCAACTAGGCACTGGGAAGAAGAACGCGAAGAAGGACGAAGCCAACAAACAGGATGTTGCGTCCCTCCGGAGGCAACATGTCCTCCAGCAGTAGCTCCAGTGATTCCTCGTCGTCGAGTTCAAGCGATTCCAGTTCTAGTGATTCCCAGCGACAGTGAAGCAGGTTAGGCAAAATCTTCTTTGTTCTAAAAACAAAACAATGANATCACCAACTATCCTTGTAAGNGGTGGTTCTCACACTGGNTAACACAGGGGCNCACACACCAACACCGNNGCGCAAACCCAGTTGANCACGCACAACAGNTACACAACAATTAAAACCACTNTTTACGGCACTATAATTCCGGTGCCCCAAACCTCCCAAGTTCTGCAAACCTCTGGGCAACCAGGTCGGNGCTGGGCATATTCGAACGGAAGGGGCANGGCAAACGGCGTCCGACTTAGCGGACGGGGCGAAGGGATANAGAAGCGTTACACANAATCCCNACAACCCCCCGGTGAAAGATTCCCAACGGCCAGGAAATNTTCACACCAAAGCCCCCTCGGGGCACACCCCTTAACCTTATTCGGGCCCAACGGTTNGGAACCCCCCGGCATNTACTCAAGNGTACAAATTACTGGGCTNCGTGTNTGACCTCCCCTATGGAGATAAGGTGTANAGCAAATATACCTGTGCCCAGCCGTGACATNATGAGAAAGGGAAAGTATGCCCCCTNTCATTTCACCGGGAAATCTGGCCACACCAACGGGGTCAATATACCGGCGNGAAAGGCCAACANTCGGAGTANCCTTAAGTATANGAANCNCGACACAGACGGGANNNGTGGGNACCCCAAANAACACCCNATAGGGAGGNAAACAAANCNCCTGANACCCTTANACCGGCGGGCATTNAATTAGTCAAAGCGGCAACTAACNGGAATATCCCATTGGGNGGTCATNGGGATANNAAACGNGCACANAGCATAGTACCCCCGGGTAGTGNCAAACAAAACAATGGGTNGGATCACGNGTACNACAAACNGAGTNGGGTTNCAACACACGAANCAACAGAGCACCTGTGTAATCCCCCAAAGTNNTACCCAAATATNGTGGGTCNTAAACTAACAACAGTGGGGGCTTAGGNACCCGCGGGCCGGCAACTNATAACATTAAACCNGGATAACTGNGGGCCCAAAAATAACCGTTNTGTAAACAATTTGAAAAAGAACACCCTAAAAACAGGTGAACGTACGGTACAT]
[+] EMBL AL693899 [GCTCATGCAGAATCGCCCCNGGTTTTCTAAATGGGGGTCATAATATTTTCCCTTATCTTTTACAGACAAAAAAGTGTCTGGTAAATCCAAGGAGGAACAGATAGACGGAGAAAAAGCAAGAGCTGGAAAAACGGCTCCAGGATGTGACGGGTCAACTAGGCACTGGGAAGAAGAACGCGAAGAAGGACGAAGCCAACAAACAGGATGTTGCGTCCCTCCGGAGGCAACATGTCCTCCAGCAGTAGCTCCAGTGATTCCTCGTCGTCGAGTTCAAGCGATTCCAGTTCTAGTGATTCCCAGCGACAGTGAAGCAGGTTAGGCAAAATCTTCTTTGTTCTAAAAACAAAACAATGANATCACCAACTATCCTTGTAAGNGGTGGTTCTCACACTGGNTAACACAGGGGCNCACACACCAACACCGNNGCGCAAACCCAGTTGANCACGCACAACAGNTACACAACAATTAAAACCACTNTTTACGGCACTATAATTCCGGTGCCCCAAACCTCCCAAGTTCTGCAAACCTCTGGGCAACCAGGTCGGNGCTGGGCATATTCGAACGGAAGGGGCANGGCAAACGGCGTCCGACTTAGCGGACGGGGCGAAGGGATANAGAAGCGTTACACANAATCCCNACAACCCCCCGGTGAAAGATTCCCAACGGCCAGGAAATNTTCACACCAAAGCCCCCTCGGGGCACACCCCTTAACCTTATTCGGGCCCAACGGTTNGGAACCCCCCGGCATNTACTCAAGNGTACAAATTACTGGGCTNCGTGTNTGACCTCCCCTATGGAGATAAGGTGTANAGCAAATATACCTGTGCCCAGCCGTGACATNATGAGAAAGGGAAAGTATGCCCCCTNTCATTTCACCGGGAAATCTGGCCACACCAACGGGGTCAATATACCGGCGNGAAAGGCCAACANTCGGAGTANCCTTAAGTATANGAANCNCGACACAGACGGGANNNGTGGGNACCCCAAANAACACCCNATAGGGAGGNAAACAAANCNCCTGANACCCTTANACCGGCGGGCATTNAATTAGTCAAAGCGGCAACTAACNGGAATATCCCATTGGGNGGTCATNGGGATANNAAACGNGCACANAGCATAGTACCCCCGGGTAGTGNCAAACAAAACAATGGGTNGGATCACGNGTACNACAAACNGAGTNGGGTTNCAACACACGAANCAACAGAGCACCTGTGTAATCCCCCAAAGTNNTACCCAAATATNGTGGGTCNTAAACTAACAACAGTGGGGGCTTAGGNACCCGCGGGCCGGCAACTNATAACATTAAACCNGGATAACTGNGGGCCCAAAAATAACCGTTNTGTAAACAATTTGAAAAAGAACACCCTAAAAACAGGTGAACGTACGGTACAT]
consensusID : consensus_5961#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1060 fasta sequence
[TCCAGTGATTCCTCGTCGTCGAGTTCAAGCGATTCCAGTTCTAGTGATTCCAGCGACAGTGAAGC-GGTTAGGCAAAATCTTCTTTG-TCTAAAAC-AAACAAAATGAATCACAATTCTGTAGTGTTTAAATGAT-AAAGGAAAAAAAGGAGAAACAGTGACAGAAAGT--AAAATAACATTTAGCACTTATCGTCCAACTCAGTTTGAAACTTGAAACAGTGGGGGATTGAAG-AGGGGCAGCAAGGGTAATAGGAGCAGTAGAGTAAAATCAACCGTAGTCAGCAGATTCACACCCGCCCCCTCTTGCAAGTGACCGATTAGTATTGTTTTCCTCTGATGTTTTTATTCTCACTATTTAAGATTCCTTATTCGATGCAAGGTATCGGAGCAATGATCTATAAACAAGGATGGGCCCATCCTTGCAAAACCTCCTTCGGGATATGTAGCATAGATTCTGGTTGTTAGCAGTTCCGTGCAAGTGTGTTGTAAAAGTGTACAGTTTTCTCTTCCCGGTTCCATTGCTATAATGGAGCCGGGGATACTACGTTGGCCAATCTGAATGAAAACCTACGCGGTGTCTCCTACGCAACGCTGCTGTCAGTTTGTTGTATGAATCACGTGGACACTGCTATATCTATAACGTAGCTCCACAGAGCATATGCATAGCAACACATAAAAAGTAATGAAAGGAATAAGTACACGATGGCTCTATTCCTTAGCAGAATATTAGCTCGCTTGCAAAGGTGTTAGGTATTTTTAATTATCGACTTTAAAC-AAAAAACAGGATTTAATTTTGGAAACACAAAACAACTTGGCAGTAGTATTTAGGGAAGACATAATTGGTGCCATCATCTTGGCGGCAAAAGATGAATAGATAGGAAGGAAATACATATGAGTATGTATTAAACACTAAGCCGTGTACAAAATGAAACAGCAAAACACAATTGGCGGAAGCAGACAAGTATTGCTGTCGTCGATGTTGTGGTTATATGGTCTATGCATAAACAATATTCTAATCCATGCTTTTGGTCCGCTATCTGCTTTATCTTCATGAACTCTTACAA]
[+] EMBL BM630971 [TCCAGTGATTCCTCGTCGTCGAGTTCAAGCGATTCCAGTTCTAGTGATTCCAGCGACAGTGAAGCAGGTTAGGCAAAATCTTCTTTGTTCTAAAACAAAACAAAATGAATCACAATTCTGTAGTGTTTAAATGATAAAAGGAAAAAAAGGAGAAACAGTGACAGAAAGT AAAATAACATTTAGCACTTATCGTCCAACTCAGTTTGAAACTTGAAACAGTGGGGGATTGAAG GGGGCAGCAAGGGTAATAGGAGCAGTAGAGTAAAATCAACCGTAGTCAGCAGATTCACACCCGCCCCCTCTTGCAAGTGACCGATTAGTATTGTTTTCCTCTGATGTTTTTATTCTCACTATTTAAGATTCCTTATTCGATGCAAGGTATCGGAGCAATGATCTATAAACAAGGATGGGCCCATCCTTGCAAAACCTCCTTCGGGATATGTAGCATAGATTCTGGTTGTTAGCAGTTCCGTGCAAGTGTGTTGTAAAAGTGTACAGTTTTCTCT ]
[+] EMBL AL930675 [ gatcgccgAGGTCAAATCTTCTTTG TCTAAAAC AAACAAAATGAATCACAATTCTGTAGTGTTTAAATGAT AAAGGAAAAAAAGGAGAAACAGTGACAGAAAGT AAAATAACATTTAGCACTTATCGTCCAACTCAGTTTGAAACTTGGAACAGTGGGGGATTGAAGCAGGGCCAGCAAGGGTAATAGGAGCAGTAGAGTAAAATCAACCGTAGTCAGCAGATTCACACCCGCCCCCTCTTGCAAGTGACCGATTAGTATTGTTTTTCTCTGATGTTTTTATTCTCACTATTTAAGATTCCTTATTCGATGCAAGGTATCGGAGCAATGATCTATAAACAAGGATGGGCCCATCCTTGCAAAA CTCCTTCGGGATATGTAGCATAGATTCTGGTTGTTAGCAGTTCCGTGCAAGTGTGTTGTAAAAGTGTACAGTTTTCTCTTCCCAGTTCCATTGCTATAATGGTGCCGGGGATACTACGTTGGCCAATCTGAATGAAAAC ]
[+] EMBL BM613960 [ ccgGGAGAAACAGTGACAGAAAGTAAAAAATAACATTTAGCACTTATCGTCCAACTCAGTTTGAAACTTGAAACAGTGGGGGATTGAAG A GGGCAGCAAGGGTAATAGGAGCAGTAGAGTAAAATCAACCGTAGTCAGCAGATTCACACCCGCCCCCTCTTGCAAGTGACCGATTAGTATTGTTTTCCGCTGATGTTTTTATTCTCACTATTTAAGATTCCTTATTCGATGCAAGGTATCGGAGCAATGATCTATAAACAAGGATGGGCCCATCCTTGCAAAACCTCCTTCGGGATATGTAGCATAGATTCTGGTTGTTAGCAGTTCCGTGCAAGTGTGTTGTAAAAGTGTACAGTTTTCTCTTCCCGGTTCCATTGCTATAATGGAGCCGGGGATACTACGTTGGCCAATCTGAATGAAAACCTACGCGGTGTCTCCTACGCAACGCTGCTGTCAGTTTGTTGTATGAATCACGTGGACACTGCTATATCTATAACGTAGCTCCACAGAGCATATGCATAGCAACACATAAAAAGTAATGAAAGGAATAAGTACACGATGGCTCTATTCCTTAGCAGAATATTAGCTCGCTTGCAAAGGTGTTAGGTATTTTTAATTATCGACTTTAAAC AAAAAACAGGATTTAATTTTGGAAACACAAA ]
[+] EMBL BM646326 [ ccgATCGGAGCAATGATCTATAAACAAGGATGGGCCCATCCTTGCAAAACCTCCTTCGGGATATGTAGCATAGATTCTGGTTGTTAGCAGTTCCGTGCAAGTGTGTTGTAAAAGTGTACAGTTTTCTCTTCCCGGTTCCATTGCTATAATGGAGCCGGGGATACTACGTTGGCCAATCTGAATGAAAACCTACGCGGTGTCTCCTACGCAACGCTGCTGTCAGTTTGTTGTATGAATCACGTGGACACTGCTATATCTATAACGTAGCTCCACAGAGCATATGCATAGCAACACATAAAAAGTAATGAAAGGAATAAGTACACGATGGCTCTATTCCTTAGCAGAATATTAGCTCGCTTGCAAAGGTGTTAGGTA TTTTAATTATCGACTTTAAACAAAAAAACAGGATTTAATTTTGGAAACACAAAACAACTTGGCAGTAGTATTTAGGGAAGACATAATTGGTGCCATCATCTTGGCGGCAAAAGATGAATAGATAGGAAGGAAATACATATGAGTATGTATTAAACACTAAGCCGTGTACAAAATGAAACAGCAAAACACAATTGGCGGAAGCAGACAAGTATTGCTGTCGTCGATGTTGTGGTTATATGGTCTATGCATAAACAATATTCTAATCCATGCTTTTGGTCCGCTATCTGCTTTATCTTCATGAACTCTTACAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5961#0 GCTCATGCAGAATCGCCCCNGGTTTTCTAAATGGGGGTCATAATATTTTCCCTTATCTTT 60
consensus_5961#1 ------------------------------------------------------------
consensus_5961#0 TACAGACAAAAAAGTGTCTGGTAAATCCAAGGAGGAACAGATAGACGGAGAAAAAGCAAG 120
consensus_5961#1 ------------------------------------------------------------
consensus_5961#0 AGCTGGAAAAACGGCTCCAGGATGTGACGGGTCAACTAGGCACTGGGAAGAAGAACGCGA 180
consensus_5961#1 ------------------------------------------------------------
consensus_5961#0 AGAAGGACGAAGCCAACAAACAGGATGTTGCGTCCCTCCGGAGGCAACATGTCCTCCAGC 240
consensus_5961#1 ------------------------------------------------------------
consensus_5961#0 AGTAGCTCCAGTGATTCCTCGTCGTCGAGTTCAAGCGATTCCAGTTCTAGTGATTCCCAG 300
consensus_5961#1 ------TCCAGTGATTCCTCGTCGTCGAGTTCAAGCGATTCCAGTTCTAGTGATTCC-AG 53
*************************************************** **
consensus_5961#0 CGACAGTGAAGCAGGTTAGGCAAAATCTTCTTTGTTCTAAAAACAAAACAATGANATCAC 360
consensus_5961#1 CGACAGTGAAGC-GGTTAGGCAAAATCTTCTTTGTCT--AAAACAAACAAAATGAATCA- 109
************ ********************** ******** ** ****
consensus_5961#0 CAACTATCCTTGTAAGNGGTGGTTCTCACACTGGNTAACACAGGGGCNCACACACCAACA 420
consensus_5961#1 ---CAATTCT-----GTAGTGTT--------TAAATGATAAAGGAAAAAAAGGAGAAACA 153
* ** ** * *** * * * * * *** * * ****
consensus_5961#0 CCGNNGCGCAAACCCAGTTGANCACGCACAACAGNTACACAACAATTAAAACCACTNTTT 480
consensus_5961#1 --GTGACAGAAAGTAAA---ATAACATTTAGCACTTATCGTCCAACTCAGTTTGAAACTT 208
* * *** * * ** * ** ** *** * * **
consensus_5961#0 ACGGCACTATAATTCCGGTGCCCCAAACCTCCCAAGTTCTGCAAACCTCTGGGCAACCAG 540
consensus_5961#1 GAAACAGTG-------GGGGATTGAAG------AGGGGCAGCAA------GGGTAATAGG 249
** * ** * ** * * * **** *** ** *
consensus_5961#0 GTCGGNGCTGGGCATATTCGAACGGAAGGGGCANGGCAAACGGCGTCCGACTTAGCGGAC 600
consensus_5961#1 AGCAGTA--GAGTAAAATCAACCGTAGTCAGCAGATTCACACCCGCCCCCTCTTGCAA-- 305
* * * * * * ** * ** * *** * ** ** * **
consensus_5961#0 GGGGCGAAGGGATANAGAAGCGTTACACANAATCCCNACAACCCCCCGGTGAAAGATTCC 660
consensus_5961#1 ---GTGACCGATTAGTATTGTTTTCCTC-TGATGTTTTTATTCTCACTATTTAAGATTCC 361
* ** * ** * ** * * ** * * * * * ********
consensus_5961#0 CAACGGCCAGGAAATNTTCACACCAAAGCCCCCTCGGGGCA-CACCCCTTAACCTTATTC 719
consensus_5961#1 T-------------TATTCGATGCAAGGTA---TCGGAGCAATGATCTATAAACAAGGAT 405
* *** *** * **** *** * *** *
consensus_5961#0 GGGCCCAACGGTTNGGAACCCCC--CGGCATNTACTCAAGNGTACAAATTACTGGGCTNC 777
consensus_5961#1 GGGCCCATCCTTGCAAAACCTCCTTCGGGATATGT-----AGCATAGATTCTGGTTGTTA 460
******* * * **** ** *** ** * * * * *** * *
consensus_5961#0 GTGTNTGACCTCCCCTATGGAGATAAGGTGTANAGCAAATATACCTGTGCCCAGCCGTGA 837
consensus_5961#1 GCAGTTCCGTGCAAGTGTGTTGTAAAAGTGTACAGTTTTCTCTTCCCGGTTCCATTGCTA 520
* * * * ** * ** ***** ** * * * * *
consensus_5961#0 CATNATGAGAAAGGGAAAGTATGCCCCCTNTCATTTCACCGGGAA---ATCTGGCCACAC 894
consensus_5961#1 TAATG-GAGCCGGGGATACTACGTTGGCCA--ATCTGAATGAAAACCTACGCGGTGTCTC 577
* *** **** * ** * * ** * * * ** * ** * *
consensus_5961#0 CAACGGGGTCAATATACCGGCGNGAAAGGCCAACANTCGGAGTANCCTTAAGTATANGAA 954
consensus_5961#1 CTACGCAACGCTGCTGTCAGTTTGTTGTATGAATCACGTGGACACTGCTATATCTATAAC 637
* *** * * * * ** * * ** * ** *
consensus_5961#0 NCN-CGACACAGACGGGANNNGTGGGNACCCCAAANAACACCCNATAGGGAGGNAAACAA 1013
consensus_5961#1 GTAGCTCCACAGAGCATATGCATAGCAACACATAAAAAGTAATGAAAGGAATAAGTACAC 697
* ****** * * * ** * ** ** * *** * ***
consensus_5961#0 ANCNCCTGANACCCTTANACCGGCGGGCATTNAATTAGTCAAAGCGGCAACTAACNGGAA 1073
consensus_5961#1 GATGGCTCTATTCCTTAG-CAGAATATTAGCTCGCTTGCAAAGGTGTTAGGTATTTTTAA 756
** ***** * * * * * ** * * * ** **
consensus_5961#0 TATCCCA--TTGGGNGGTCATNGGGATANNAAACGNGCACANAGCATAGTACCCCCGGGT 1131
consensus_5961#1 TTATCGACTTTAAACAAAAAACAGGAT-TTAATTTTGGAAACACAAAACAACTTGGCAGT 815
* * * ** * **** ** * * * * * * ** **
consensus_5961#0 AGTGNCAAACAAAACAATGGGTNGGATCACGNGTACNACAAACNGAGTNGGGTTNCAACA 1191
consensus_5961#1 AGTATTTAGGGAAGACATAATTGGTGCCATCATCTTGGCGGCAAAAGATGAATAGATAGG 875
*** * ** ** * * ** * ** * * *
consensus_5961#0 CACGAANCAACAGAGCACCTGTGTAATCCCCCAAAGTNNTACCCAAATATNGTGGGTCNT 1251
consensus_5961#1 AAGGAAATACATATGAGTATGTATTAAACACTAA-GCCGTGTACAAAATGAAACAGCAAA 934
* *** * * *** * * * * ** * * **** *
consensus_5961#0 AAACTAACAACAGTGGGGGCTTAGGNACCCGCGGGCCGGCAAC-TNATAACATTAAACCN 1310
consensus_5961#1 ACACAATTGGCGGAAGCAGACAAGTATTGCTGTCGTCGATGTTGTGGTTATATGGTCTAT 994
* ** * * * * * ** * * ** * * * **
consensus_5961#0 GGATAACTGNGGGCCCAAAAATAACCGTTNTGTAAACAATTTGAAAAAGAACACCCTAAA 1370
consensus_5961#1 GCATAAACAATATTCTAATC-CATGCTTTTGGTCCGCTATCTGCTTTAT--CTTCATGAA 1051
* **** * ** * * ** ** * ** ** * * * * **
consensus_5961#0 AACAGGTGAACGTACGGTACAT 1392
consensus_5961#1 CTCTTACAA------------- 1060
* *
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||