cluster # 5980

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Anopheles gambiae
cluster # 5980 cluster # 5980 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5980#0 length = 837 sequences # 2

consensus_5980#1 length = 723 sequences # 3

consensusID : consensus_5980#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 837
fasta sequence

                              [GGGGGCCGGCAGCTCGAGCACATGTGGCCTTTTTTTTTTTTTTTTTTTGTGTTACATTTAAACAAACTTGTATTTATGCGCTACATCGAAAAGAGAATGGACGTATCATTGTCCTCCTCTTCCTCCTCCTGCCCATCCTCCTCGCTAAGCTCCTGCTCGATAAACTCGCGCTTGCGCTGCACGTACCGCGCTTCCGCGAGCAATGCCAGCGCGTGGGAGGAAAGCTGCCGCGACATGGTTTTGTTCTTCAGATCGTGACAGAACCGGATGCGCGATTCCAGATGCTTCTCGATCCAGTTCTGCTCATCCTCCGTATCGGTGTCCCACGGCATCCAGAGATGCTGGTAGAAAAACCGCAGCTTATCGATACAGTCGGCCGTAATGTTGACGTTCAGGGCGGGGTTGTT-TGCTCGCGCAGCGGCCACAGCTCCTCCAGCTGCACCGTACACTGCTCCTCCGGCAGATGCACATCATCGTCCAGGATGGCTTCGATGAGGAAGACGGCCTTCAGCTCGTCGAACAGTACCTGGTCCACGGTGCCCAGCACGACGAGCGGGTACTTTACGCCGAGCTGCTCGCATACCGGAACGCGATGCTTTCCACAGCGCCTGCCAGCCGGTCGGCTCTACGGCCACCTCCACGAAATTGATCCATTCCGAGCGGATGGCGGATGCGGGAATGTTGGAACCGCCACCGTTCAGCACGTTGGTCGTCTCGAGCAGACGGGTCAGGAAACTTTTGTTAAACTCGTACACTTCCATCTTTGTGTTGTGATCGAATCCAGCCAGTAGGCCAACAGTGCTCGAGGAATTCCGCAGCTTTTTAGAGTAAGTACCC]

[-] EMBL CNS090M5             [GGGGGCCGGCAGCTCGAGCACATGTGGCCTTTTTTTTTTTTTTTTTTTGTGTTACATTTAAACAAACTTGTATTTATGCGCTACATCGAAAAGAGAATGGACGTATCATTGTCCTCCTCTTCCTCCTCCTGCCCATCCTCCTCGCTAAGCTCCTGCTCGATAAACTCGCGCTTGCGCTGCACGTACCGCGCTTCCGCGAGCAATGCCAGCGCGTGGGAGGAAAGCTGCCGCGACATGGTTTTGTTCTTCAGATCGTGACAGAACCGGATGCGCGATTCCAGATGCTTCTCGATCCAGTTCTGCTCATCCTCCGTATCGGTGTCCCACGGCATCCAGAGATGCTGGTAGAAAAACCGCAGCTTATCGATACAGTCGGCCGTAATGTTGACGTTCAGGGCGGGGTTGTT TGCTCGCGCAGCGGCCACAGCTCCTCCAGCTGCACCGTACACTGCTCCTCCGGCAGATGCACATCATCGTCCAGGATGGCTTCGATGAGGAAGACGGCCTTCAGCTCGTCGAACAGTACCTGGTCCACGGTGCCCAGCACGACGAGCGGGTACTTTACGCCGAGCTGCTCGCATACCGGAACGCGATGCTTTCCACAGCGCCTGCCAGCCGGTCGGCTCTACGGCCACCTCCACGAAATTGATCCATTCCGAGCGGATGGCGGATGCGGGAATGTTGGAACCGCCACCGTTCAGCACGTTGGTCGTCTCGAGCAGACGGGTCAGGAAACTTTTGTTAAACTCGTACACTTCCATCTTTG                                                                       ]
[+] EMBL CNS090M6             [                                                               AAACTTGTATTTATGCGCTACATCGAAAAGAGAATGGACGTATCATTGTCCTCCTCTTCCTCCTCCTGCCCATCCTCCTCGCTAAGCTCCTGCTCGATAAACTCCCGCTTGCGCTGCACGTACCGCGCTTCCGCGAGCAATGCCAGCGCGTGGGAGGAAAGCTGCCGCGACATGGTTTTGTTCTTCAGATCGTGACAGAACCGGATGCGCGATTCCAGATGCTTCTCGATCCAGTCCTGCTCATCCTCCGTATCGGTGTCCCACGGCATCCAGAGATGCTGGTAGAAAAACCGCAGCTTATCGATACAGTCGGCCGTAATGTTGACGTTCAGGGCGGGGTTGTTCTGCTCGCGC CAGGCCACAGCTCCTCCAGCTGCACCGTACACTGCTCCTCCGGCAGATGCACATCATCGTCCAGGATGGCTTCGATGAGGAAGACGGCCTTCAGCTCGTCGAACAGTACCTGGTCCACGGTGCCCAGCACGACGAGCGGGTACTTTACGCCGAGCTGCTCGCATACCGG ACGCGATGCTTTCCACAGCGCCTGCCAGCCGGTCGGCTCTACGGCCACCTCCACGAAATTGATCCATTCCGAGCGGATGGCGGATGCGGGAATGTTGGAACCGCCACCGTTCAGCACGTTGGTCGTCTCGAGCAGACGGGTCAGGAAACTTTTGTTAAACTCGTACACTTCCATCTTTGTGTTGTGATCGAATCCAGCCAGTAGGCCAACAGTGCTCGAGGAATTCCGCAGCTTTTTAGAGTAAGTACCC]




>consensus_5980#0
GGGGGCCGGCAGCTCGAGCACATGTGGCCTTTTTTTTTTTTTTTTTTTGTGTTACATTTA
AACAAACTTGTATTTATGCGCTACATCGAAAAGAGAATGGACGTATCATTGTCCTCCTCT
TCCTCCTCCTGCCCATCCTCCTCGCTAAGCTCCTGCTCGATAAACTCGCGCTTGCGCTGC
ACGTACCGCGCTTCCGCGAGCAATGCCAGCGCGTGGGAGGAAAGCTGCCGCGACATGGTT
TTGTTCTTCAGATCGTGACAGAACCGGATGCGCGATTCCAGATGCTTCTCGATCCAGTTC
TGCTCATCCTCCGTATCGGTGTCCCACGGCATCCAGAGATGCTGGTAGAAAAACCGCAGC
TTATCGATACAGTCGGCCGTAATGTTGACGTTCAGGGCGGGGTTGTTTGCTCGCGCAGCG
GCCACAGCTCCTCCAGCTGCACCGTACACTGCTCCTCCGGCAGATGCACATCATCGTCCA
GGATGGCTTCGATGAGGAAGACGGCCTTCAGCTCGTCGAACAGTACCTGGTCCACGGTGC
CCAGCACGACGAGCGGGTACTTTACGCCGAGCTGCTCGCATACCGGAACGCGATGCTTTC
CACAGCGCCTGCCAGCCGGTCGGCTCTACGGCCACCTCCACGAAATTGATCCATTCCGAG
CGGATGGCGGATGCGGGAATGTTGGAACCGCCACCGTTCAGCACGTTGGTCGTCTCGAGC
AGACGGGTCAGGAAACTTTTGTTAAACTCGTACACTTCCATCTTTGTGTTGTGATCGAAT
CCAGCCAGTAGGCCAACAGTGCTCGAGGAATTCCGCAGCTTTTTAGAGTAAGTACCC

consensusID : consensus_5980#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 723
fasta sequence

                              [AGCTGCAACAGCTCTCCCGACCGGCTATCCTTCAGGATGGACGTATCATTGTCCTCCTCTTCCTCCTCCTGTCCATCCTCCTCGCTCAGCTCCTGCTCGATAAACTCCCGCTTGCGCTGCACGTACCGCGCTTCCGCGAGCAAGGCCAGCGCGTGGGAGGAAAGCTGCCGCGACATGGTCTTGTTCTTCAGATCGTGACAGAACCGGATGCGCGATTCCAGATGCTTCTCGATCCAGTTCTGCTCATCCTCCGTATCGGTGTCCCACGGCATCCAGAGATGCTGGTAGAAAAACCGCAGCTTATCGATACAGTCGGCCGTAATGTTGACGTTTAGGGCGGGGTTGTTCTGCTCGCGCAGCGGCCACAGCTCCTCCAGCTGCACCGTACACTGCTCCTCCGGCAGATGCACATCATCGTCCAGGATGGCTTCGATGAGGAAGACGGCCTTCAGCTCGTCGAACAGTACCTGGTCCACGGTGCCCAGCACGACGAGCGGGTACTTTACGCCGAGCTGCTCGCATACCGGACGCGATGCTTTCCACAGCGCCTGCCAGCCGGTCGGCTCTACGGCCACCTCCACGAAATTGATCCATTCCGAGCGGATGGCGGATGCGGGAATGTTGGAACCGCCACCGTTCAGCACGTTGGTCGTCTCGAGCAGACGGGTCAGGAAACTTTTGTTAAACTCGTACACTTCCATCTTTGTGCCCACGCGTCCGCGG]

[-] EMBL BM603661             [AGCTGCAACAGCTCTCCCGACCGGCTATCCTTCAGGATGGACGTATCATTGTCCTCCTCTTCCTCCTCCTGTCCATCCTCCTCGCTCAGCTCCTGCTCGATAAACTCCCGCTTGCGCTGCACGTACCGCGCTTCCGCGAGCAAGGCCAGCGCGTGGGAGGAAAGCTGCCGCGACATGGTCTTGTTCTTCAGATCGTGACAGAACCGGATGCGCGATTCCAGATGCTTCTCGATCCAGTTCTGCTCATCCTCCGTATCGGTGTCCCACGGCATCCAGAGATGCTGGTAGAAAAACCGCAGCTTATCGATACAGTCGGCCGTAATGTTGACGTTTAGGGCGGGGTTGTTCTGCTCGCGCAGCGGCCACAGCTCCTCCAGCTGCACCGTACACTGCTCCTCCGGCAGATGCACATCATCGTCCAGGATGGCTTCGATGAGGAAGACGGCCTTCAGCTCGTCGAACAGTACCTGGTCCACGGTGCCCAGCACGACGAGCGGGTACTTTACGCCGAGCTGCTCGCATACCGGACGCGATGCTTTCCACAGCGCCTGCCAGCCGGTCGGCTCTACGGCCACCTCCACGAAATTGATCCATTCCGAGCGGATGGCGGATGCGGGAATGTTGGAACCGCCACCGTTCAGCACGTTGGTCGTCTCGAGCAGACGGGTCAGGAAACTTTTGTTAAACTCGTACACTTCCATCTTTGTGCCCACGCGTCCGCGG]
[-] EMBL BM588195             [                                                                                             TGCTCGATAAACTCCCGCTTGCGCTGCACGTACCGCGCTTCCGCGAGCAAGGCCAGCGCGTGGGAGGAAAGCTGCCGCGACATGGTCTTGTTCTTCAGATCGTGACAGAACCGGATGCGCGATTCCAGATGCTTCTCGATCCAGTTCTGCTCATCCTCCGTATCGGTGTCCCACGGCATCCAGAGATGCTGGTAGAAAAACCGCAGCTTATCGATACAGTCGGCCGTAATGTTGACGTTTAGGGCGGGGTTGTTCTGCTCGCGCAGCGGCCACAGCTCCTCCAGCTGCACCGTACACTGCTCCTCCGGCAGATGCACATCATCGTCCAGGATGGCTTCGATGAGGAAGACGGCCTTCAGCTCGTCGAACAGTACCTGGTCCACGGTGCCCAGCACGACGAGCGGGTACTTTACGCCGAGCTGCTCGCATACCGGACGCGATGCTTTCCACAGCGCCTGCCAGCCGGTCGGCTCTACGGCCACCTCCACGAAATTGATCCATTCCGAGCGGATGGCGGATGCGGGAATGTTGGAACCGCCACCGTTCAGCACGTTGGTCGTCTCGAGCAGACGGGTCAGGAAACTTTTGTTAAACTCGTACACTTCCATCTTTGTGCgg            ]
[-] EMBL BX629127             [                                                                                                                                    TCCGCGAGCAAGGCCAGCGCGTGGGAGGAAAGCTGCCGCGACATGGTCTTGTTCTTCAGATCGTGACAGAACCGGATGCGCGATTCCAGATGCTTCTCGATCCAGTTCTGCTCATCCTCCGTATCGGTGTCCCACGGCATCCAGAGATGCTGGTAGAAAAACCGCAGCTTATCGATACAGTCGGCCGTAATGTTGACGTTCAGGGCGGGGTTGTTCTGCTCGCGCAGCGGCCACAGCTCCTCCAGCTGCACCGTACACTGCTCCTCCGGCAGATGCACATCATCGTCCAGGATGGCTTCGATGAGGAAGACGGCCTTCAGCTCGTCGAACAGTACCTGTTCCACGGTGCCCAGCACGACGAGCGGGTACTTTACGCCGAGCTGCTCGCATACCGGACGCGATGCTTTCCACAGCGCCTGCCAGCCGGTCGGCTCTACGGCCACCTCCACGAAATTGATCCATTCCGAGCGGATGGCGGATGCGGGAATGTTGGAACCGCCACCGTTCAGCACGTTGGTCGTCTCGAGCAGACGGGTGAGGAAACTTTTGTTAAACTCGTACACTTCCATCTcc                  ]




>consensus_5980#1
AGCTGCAACAGCTCTCCCGACCGGCTATCCTTCAGGATGGACGTATCATTGTCCTCCTCT
TCCTCCTCCTGTCCATCCTCCTCGCTCAGCTCCTGCTCGATAAACTCCCGCTTGCGCTGC
ACGTACCGCGCTTCCGCGAGCAAGGCCAGCGCGTGGGAGGAAAGCTGCCGCGACATGGTC
TTGTTCTTCAGATCGTGACAGAACCGGATGCGCGATTCCAGATGCTTCTCGATCCAGTTC
TGCTCATCCTCCGTATCGGTGTCCCACGGCATCCAGAGATGCTGGTAGAAAAACCGCAGC
TTATCGATACAGTCGGCCGTAATGTTGACGTTTAGGGCGGGGTTGTTCTGCTCGCGCAGC
GGCCACAGCTCCTCCAGCTGCACCGTACACTGCTCCTCCGGCAGATGCACATCATCGTCC
AGGATGGCTTCGATGAGGAAGACGGCCTTCAGCTCGTCGAACAGTACCTGGTCCACGGTG
CCCAGCACGACGAGCGGGTACTTTACGCCGAGCTGCTCGCATACCGGACGCGATGCTTTC
CACAGCGCCTGCCAGCCGGTCGGCTCTACGGCCACCTCCACGAAATTGATCCATTCCGAG
CGGATGGCGGATGCGGGAATGTTGGAACCGCCACCGTTCAGCACGTTGGTCGTCTCGAGC
AGACGGGTCAGGAAACTTTTGTTAAACTCGTACACTTCCATCTTTGTGCCCACGCGTCCG
CGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5980#0      GGGGGCCGGCAGCTCGAGCACATGTGGCCTTTTTTTTTTTTTTTTTTTGTGTTACATTTA 60
consensus_5980#1      -------------------------------------------------------AGCTG 5
                                                                             *  * 

consensus_5980#0      AACAAACTTGTATTTATGCGCTACATCGAAAAGAGAATGGACGTATCATTGTCCTCCTCT 120
consensus_5980#1      CAACAGCTC-TCCCGACCGGCTATCCT----TCAGGATGGACGTATCATTGTCCTCCTCT 60
                       *  * **  *    *   ****          ** ************************

consensus_5980#0      TCCTCCTCCTGCCCATCCTCCTCGCTAAGCTCCTGCTCGATAAACTCGCGCTTGCGCTGC 180
consensus_5980#1      TCCTCCTCCTGTCCATCCTCCTCGCTCAGCTCCTGCTCGATAAACTCCCGCTTGCGCTGC 120
                      *********** ************** ******************** ************

consensus_5980#0      ACGTACCGCGCTTCCGCGAGCAATGCCAGCGCGTGGGAGGAAAGCTGCCGCGACATGGTT 240
consensus_5980#1      ACGTACCGCGCTTCCGCGAGCAAGGCCAGCGCGTGGGAGGAAAGCTGCCGCGACATGGTC 180
                      *********************** *********************************** 

consensus_5980#0      TTGTTCTTCAGATCGTGACAGAACCGGATGCGCGATTCCAGATGCTTCTCGATCCAGTTC 300
consensus_5980#1      TTGTTCTTCAGATCGTGACAGAACCGGATGCGCGATTCCAGATGCTTCTCGATCCAGTTC 240
                      ************************************************************

consensus_5980#0      TGCTCATCCTCCGTATCGGTGTCCCACGGCATCCAGAGATGCTGGTAGAAAAACCGCAGC 360
consensus_5980#1      TGCTCATCCTCCGTATCGGTGTCCCACGGCATCCAGAGATGCTGGTAGAAAAACCGCAGC 300
                      ************************************************************

consensus_5980#0      TTATCGATACAGTCGGCCGTAATGTTGACGTTCAGGGCGGGGTTGTT-TGCTCGCGCAGC 419
consensus_5980#1      TTATCGATACAGTCGGCCGTAATGTTGACGTTTAGGGCGGGGTTGTTCTGCTCGCGCAGC 360
                      ******************************** ************** ************

consensus_5980#0      GGCCACAGCTCCTCCAGCTGCACCGTACACTGCTCCTCCGGCAGATGCACATCATCGTCC 479
consensus_5980#1      GGCCACAGCTCCTCCAGCTGCACCGTACACTGCTCCTCCGGCAGATGCACATCATCGTCC 420
                      ************************************************************

consensus_5980#0      AGGATGGCTTCGATGAGGAAGACGGCCTTCAGCTCGTCGAACAGTACCTGGTCCACGGTG 539
consensus_5980#1      AGGATGGCTTCGATGAGGAAGACGGCCTTCAGCTCGTCGAACAGTACCTGGTCCACGGTG 480
                      ************************************************************

consensus_5980#0      CCCAGCACGACGAGCGGGTACTTTACGCCGAGCTGCTCGCATACCGGAACGCGATGCTTT 599
consensus_5980#1      CCCAGCACGACGAGCGGGTACTTTACGCCGAGCTGCTCGCATACCGGA-CGCGATGCTTT 539
                      ************************************************ ***********

consensus_5980#0      CCACAGCGCCTGCCAGCCGGTCGGCTCTACGGCCACCTCCACGAAATTGATCCATTCCGA 659
consensus_5980#1      CCACAGCGCCTGCCAGCCGGTCGGCTCTACGGCCACCTCCACGAAATTGATCCATTCCGA 599
                      ************************************************************

consensus_5980#0      GCGGATGGCGGATGCGGGAATGTTGGAACCGCCACCGTTCAGCACGTTGGTCGTCTCGAG 719
consensus_5980#1      GCGGATGGCGGATGCGGGAATGTTGGAACCGCCACCGTTCAGCACGTTGGTCGTCTCGAG 659
                      ************************************************************

consensus_5980#0      CAGACGGGTCAGGAAACTTTTGTTAAACTCGTACACTTCCATCTTTGTGTTGTGATCGAA 779
consensus_5980#1      CAGACGGGTCAGGAAACTTTTGTTAAACTCGTACACTTCCATCTTTGTGCC-CACGCGTC 718
                      *************************************************       **  

consensus_5980#0      TCCAGCCAGTAGGCCAACAGTGCTCGAGGAATTCCGCAGCTTTTTAGAGTAAGTACCC 837
consensus_5980#1      CGCGG----------------------------------------------------- 723
                        * *