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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6003#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 905 fasta sequence
[CTGTTGGCCTACTGGTTCCTCAGAAGCCAGATCAAATTTATTTTGAATCGAGTTTTCATCCAGCTCTGCACCGTTTTTCCAGCCCTAAGTGAGTGTTCCGTTCGCTAGGCACCGAATCTGCCTCTTCCACAGGCCGTCATGAGCAAAACCGCTGCGAC-AAAACCGGGCGTAACGTCGCCCGCGGAAGTCACGTCCGATGCGTTTTGTCGAATATGTTTGCTGAAGCGGCCCCACCTGAAGTCGCTGATGGAGCGGGTCGATGGCGTGATGATACCGGAAATGCTGTACAAAGTGTGCGGCCGCCAGATCGAGGTGCAGGAGGGCTACCCGCGCAGCATCTGCCAACGGTGTCTGTGCCAGTTGGACTGTGCGTTTAAATTTTTGAACGAGTTCCACCAGCAGGACGAACGTTTGCGCAGCTTCTACTGGAGCGGCTCCGTGGTGAAACGGCTGTATGGTTACCGCCCAGACGCACAACTACTTCTTCGGATCGCGCATCCCGTACGACAGCCTCGTCAACCAGACCACCGTCATACAGTCGAGTTCGTTCCTGCGCGTGAAGTCTGCCTACCTGGACTACCCGCTGAAGGGACAGCGTGGACGCAACATTACCGCCATCTACGTGTACGACCGGCTCGGCAGTGGCCGTGGAGGATACGCCAGCATTACGAGCGGTGGCATCGGAAAGAACTACACCCGTATCAATCTGAAGACGCAGCGTGGAAATGGCATGAACTTCCAGGTGGAAATCTACGGCCGCTAAGATGCTGTCGTCCCGCTTGATGAGCAACGACTTTGTAAACCAAACAGACGAAGAAATAGATAACATCCGCTGACATGCTCTTTCATAGTGCATACTAGCTACAAAAAAAAAAAGAAAAAGGCCACATGTGCTCGAGCTGCTG]
[-] EMBL CNS08D4Z [CTGTTGGCCTACTGGTTCCTCAGAAGCCAGATCAAATTTATTTTGAATCGAGTTTTCATCCAGCTCTGCACCGTTTTTCCAGCCCTAAGTGAGTGTTCCGTTCGCTAGGCACCGAATCTGCCTCTTCCACAGGCCGTCATGAGCAAAACCGCTGCGACAAAAACCGGGCGTAACGTCGCCCGCGGAAGTCACGTCCGATGCGTTTTGTCGAATATGTTTGCTGAAGCGGCCCCACCTGAAGTCGCTGATGGAGCGGGTCGATGGCGTGATGATACCGGAAATGCTGTACAAAGTGTGCGGCCGCCAGATCGAGGTGCAGGAGGGCTACCCGCGCAGCATCTGCCAACGGTGTCTGTGCCAGTTGGACTGTGCGTTTAAATTTTTGAACGAGTTCCACCAGCAGGACGAACGTTTGCGCAGCTTCTACTGGAGCGGCTCCGTGGTGAAACGGCTGTATGGTTACCGCCCAGACGCACAACTACTTCTTCGGATCGCGCATCCCGTACGACAGCCTCGTCAACCAGACCACCGTCATACAGTCGAGTTCGTTCCTGCGCGTGAAGTCTGCCTACCTGGACTACCCGCTGAAGGGACAGCGTGGACGCAACATTACCGCCATCTACGTGTACGACCGGCTCGGCAGTGGCCGTGGAGGATACGCCAGCATTACGAGCGGTGGCATCGGAAAGAACTACACCCGTATCAATCTGAAGACGCAGCGTGGAAATGGCATGAACTTCCAGGTGGAAATCTACGGCCGCTAAGATGCTGTCGTCCCGCTTGATGAGCAACGACTTTGTAAACCAAACAGACGAAGAAATAGATAACATCCGCTGACATGCT ]
[+] EMBL CNS08D4Y [ ATTTATTTTGAATCGAGTTTTCATCCAGCTCTGCACCGTTTTTCCAGCCCTAAGTGAGTGTTCCGTTCGCTAGGCACCGAATCTGCCTCTTCCACAGGCCGTCATGAGCAAAACCGCTGCGAC AAAACCGGGCGTAACGTCGCCCGCGGAAGTCACGTCCGATGCGTTTTGTCGAATATGTTTGCTGAAGCGGCCCCACCTGAAGTCGCTGATGGAGCGGGTCGATGGCGTGATGATACCGGAAATGCTGTACAAAGTGTGCGGCCGCCAGATCGAGGTGCAGGAGGGCTACCCGCGCA CATCTGCCAACGGTGTCTGTGCCAGTTGGACTGTGCGTTTAAATTTTTGAACGAGTTCCACCAGCAGGACGAACGTTTGCGCA CTTCTACTGGAGCGGCTCCGTGGTGAAACGGCTGTATGGTTACCGCCCAGACGCACAACTACTTCTTCGGATCGCGCATCCCGTACGACAGCCTCGTCAACCAGACCACCGTCATACAGTCGAGTTCGTTCCTGCGCGTGAAGTCTGCCTACCTGGACTACCCGCTGAAGGGACAGCGTGGACGCAACATTACCGCCATCTACGTGTACGACCGGCTCGGCAGTGGCCGTGGAGGATACGCCAGCATTACGAGCGGTGGCATCGGAAAGAACTACACCCGTATCAATCTGAAGACGCAGCGTGGAAATGGCATGAACTTCCAGGTGGAAATCTACGGCCGCTAAGATGCTGTCGTCCCGCTTGATGAGCAACGACTTTGTAAACCAAACAGACGAAGAAATAGATAACATCCGCTGACATGCTCTTTCATAGTGCATACTAGCTACAAAAAAAAAAAGAAAAAGGCCACATGTGCTCGAGCTGCTG]
[-] EMBL AGA281445 [ AAGTGACTGTTCCGTTCGCTAGGCACCGAATCTGCCTCTTCCACAGGCCGTCATGAGCAAAACCGCTGCGAC AAAACCGGGCGTAACGTCGCCCGCGGAAGTCACGTCCGACGCGTTTTGTCGAATATGTTTGCTGAAGCGGCCCCACCTGAAGTCGCTGATGGAGCGGGTCGATGGCGTGATGATACCGGAAATGCTGTACA ]
consensusID : consensus_6003#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 636 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGCCGAGGAAAAGCTAAACCGGGGTTCAGCAGAATGGCATCCGTTACGTCGAAAACGCCAATGCTTCGTGCGGCAGCGGCCCGTGGCTTTGCCGCCCATGCACAGGCTGCCGCTGCCAGCCGTGGCTCGGCTGAAGTGCAGACGACCACCCTGCCCAACAAGCTGGTTGTGGCATCGGCCGACCCGAACGCTGCCGTGTCACGGATTTCCATCGTTTTCCGTGCCGGATCGCGCAACGAAACTGCCGATTGCCTCGGTGCGGCTCACGTCCTGCGTGCGGCCGGAGGGCTCTCCACCAAGACGGCCACCGCCTTCGGTATTACGCGCAACATTCAGCAGGCGGGTGGTAGCCTAACGACCGCGGCCGACCGTGAGCTGGTAACGTACAGCGTCGCCGTGACGAAGGATCAGCTGGAGGTGGGCCTGAAGTACCTGGAGGCGACCGCCACCGGCCAGGTGTTCAAGCCCTGGGAGCTGGCCGAGCTGACGCCCATCATCCGCAACGAGCTGGCCCGTCTGCCGGTGGAGGTGCAGGCGGTGGAGCTGCTGCACAAGGCCGCCTTTCCGCGACGGGCTGGGCAACTCCGTCTTCTGCCCCGACTATCTGGTCG]
[+] EMBL BM648239 [CCGCCCACGCGTCCGCCCACGCGTCCGCCGAGGAAAAGCTAAACCGGGGTTCAGCAGAATGGCATCCGTTACGTCGAAAACGCCAATGCTTCGTGCGGCAGCGGCCCGTGGCTTTGCCGCCCATGCACAGGCTGCCGCTGCCAGCCGTGGCTCGGCTGAAGTGCAGACGACCACCCTGCCCAACAAGCTGGTTGTGGCATCGGCCGACCCGAACGCTGCCGTGTCACGGATTTCCATCGTTTTCCGTGCCGGATCGCGCAACGAAACTGCCGATTGCCTCGGTGCGGCTCACGTCCTGCGTGCGGCCGGAGGGCTCTCCACCAAGACGGCCACCGCCTTCGGTATTACGCGCAACATTCAGCAGGCGGGTGGTAGCCTAACGACCGCGGCCGACCGTGAGCTGGTAACGTACAGCGTCGCCGTGACGAAGGATCAGCTGGAGGTGGGCCTGAAGTACCTGGAGGCGACCGCCACCGGCCAGGTGTTCAAGCCCTGGGAGCTGGCCGAGCTGACGCCCATCATCCGCAACGAGCTGGCCCGTCTGCCGGTGGAGGTGCAGGCGGTGGAGCTGCTGCACAAGGCCGCCTTTCCGCGACGGGCTGGGCAACTCCGTCTTCTGCCCCGACTATCTGGTCG]
consensusID : consensus_6003#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 486 fasta sequence
[CCGTGAAGTTTACCATCGACAAGGGTACGGTAGTGTTTATCCCGATCGCAGGTCTGCACCACGATCCACAGTACTATCCGAACCCGAGCAAGTTCGATCCGGAGCGATTCAGTGTGGAAAATCGGGACAAAATTAATCCGAACACGTACCTGCCGTTCGGCATTGGTCCGCGCAACTGTATCGGATCTCGGTTCGCTCTGATGGAGGTGAAGGCCATCATCTACTACATGTTGCGCGAGTTTTCGTTCGAACGCACACCGAACACGCAGGTGCCGCTCCGGCTAGCAAAGGGATTTGCTGGCATGCGCAGCGAAAAGGGTGTGTTTGTCGAGTTCCGGCCACGCAAGCAAGCTGCTCAGTGATCTTCCGCTGCAAGATCCTCAAAAGCAAGCCTGCTGAGAATAGGTATAAAGTATTAACATAAAGTAGCATTTAGGGAATAGACAGTGAGGCAATTTTTAATTTACAATAAAGTAATTTAAATCG]
[+] EMBL BM634140 [CCGTGAAGTTTACCATCGACAAGGGTACGGTAGTGTTTATCCCGATCGCAGGTCTGCACCACGATCCACAGTACTATCCGAACCCGAGCAAGTTCGATCCGGAGCGATTCAGTGTGGAAAATCGGGACAAAATTAATCCGAACACGTACCTGCCGTTCGGCATTGGTCCGCGCAACTGTATCGGATCTCGGTTCGCTCTGATGGAGGTGAAGGCCATCATCTACTACATGTTGCGCGAGTTTTCGTTCGAACGCACACCGAACACGCAGGTGCCGCTCCGGCTAGCAAAGGGATTTGCTGGCATGCGCAGCGAAAAGGGTGTGTTTGTCGAGTTCCGGCCACGCAAGCAAGCTGCTCAGTGATCTTCCGCTGCAAGATCCTCAAAAGCAAGCCTGCTGAGAATAGGTATAAAGTATTAACATAAAGTAGCATTTAGGGAATAGACAGTGAGGCAATTTTTAATTTACAATAAAGTAATTTAAATCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6003#1 ------------------------------------------------------------
consensus_6003#2 ------------------------------------------------------------
consensus_6003#0 CTGTTGGCCTACTGGTTCCTCAGAAGCCAGATCAAATTTATTTTGAATCGAGTTTTCATC 60
consensus_6003#1 ------------------------------------------------------------
consensus_6003#2 ------------------------------------------------------------
consensus_6003#0 CAGCTCTGCACCGTTTTTCCAGCCCTAAGTGAGTGTTCCGTTCGCTAGGCACCGAATCTG 120
consensus_6003#1 ----CCGCCCACGCGTCCGCCCACGCGTCCGCCGAGGAAAAGCTAAACCGGGGTTCAGCA 56
consensus_6003#2 ------------------------------------------------------------
consensus_6003#0 CCTCTTCCACAGGCCGTCATGAGCAAAACCGCTGCGACAAAACCGGGCGTAACGTCGCCC 180
consensus_6003#1 GAATGGCATCCGTTACGTCGAAAACGCCAATGCTTCGTGCGGCAGCGGCCCGTGGCTTTG 116
consensus_6003#2 ------------------------------------------------------------
consensus_6003#0 GCGGAAGTCACGTCCGATGCGTTTTGTCGAATATGTTTGCTGAAGCGGCCCCACCTGAAG 240
consensus_6003#1 CCGCCCATGC-ACAGGCTGCCGCTGCCAGCCGTGGCTCGGCTGAAGTGCAGACGACCACC 175
consensus_6003#2 ------CCGT-GAAGTTTACCATCGACAAGGGTACGGTAGTGTTTATCCCGATCGCAGGT 53
consensus_6003#0 TCGCTGATGGAGCGGGTCGATGGCG-TGATGATACCGGAAATGCTGTACAAAGTGTGCGG 299
* * * * * * *
consensus_6003#1 CTGCCCAACAAGCTGGTTGTGGCATCGGCCGACCCGAACGCTGCCGTGTCACGGATTTCC 235
consensus_6003#2 CTGCACCACGATC---------CACAGTACTATCCGAACCCGAGCAAGTTC--GATCCGG 102
consensus_6003#0 CCGCCAGATCGAGGTGCAGGAGGGCTACCCGCGCAGCATCTGCCAACGGTGTCTGTGCCA 359
* ** * * * * * * *
consensus_6003#1 ATCGTTTTCCGTGCCGGATCGCGCAACGAAACTGCCGATTGCCTCGGTGCGGCTCACGTC 295
consensus_6003#2 AGCGATT-CAGTGTGGAAAATCGGGACAAAATT----AATCCGAACACGTACCTGCCGTT 157
consensus_6003#0 GTTGGACTGTGCGTTTAAATTTTTGAACGAGTTCC--ACCAGCAGGACGAACGT-TTGCG 416
* * * * * * * * * * *
consensus_6003#1 CTGCGTGCGGCCGGAGGGCTCTCCACCAAGACGGC--CACCGCCTTCGGTATTACGCGCA 353
consensus_6003#2 CGGCATTGGTCCGCGCAACTGTATCGGATCTCGGTT-CGCTCTGATGGAGGTGAAGGCCA 216
consensus_6003#0 CAGCTTCTACTGGAGCGGCTCCGTGGTGAAACGGCTGTATGGTTACCGCCCAGACGCACA 476
* ** * * ** *** * * * **
consensus_6003#1 ACATTCAGCAGGCGGGTGGTAGCCT-AACGACCGCGGCCGACCGTGAGCTGGTAACGTAC 412
consensus_6003#2 TCATCTACTACATGTTGCGCGAGTT-TTCGTTCG-AACGCACACCGAACACGCAG-GTGC 273
consensus_6003#0 ACTACTTCTTCGGATCGCGCATCCCGTACGACAGCCTCGTCAACCAGACCACCGTCATAC 536
* * ** * * * * *
consensus_6003#1 ---------AGCGTCGCCGTGACGAAG--GATCAGCTGGAGGTGGGCCTGAAGTACCTGG 461
consensus_6003#2 ---------CGCTCCGGCTAGCAAAGG--GATTTGCTGGCATGCGCAGCGAAAAGGGTGT 322
consensus_6003#0 AGTCGAGTTCGTTCCTGCGCGTGAAGTCTGCCTACCTGGACTACCCGCTGAAGGGACAGC 596
* * * * * * **** *** *
consensus_6003#1 AGGCGACCGCCACCGGCCAGGTGTTCAAGCCCTGGGAGCTGGCCGAGCTGACGCC-CATC 520
consensus_6003#2 GTTTGTCGAGTTCCGGCCACGCAAGCAAGCT------GCTCAGTGATCTTCCGCTGCAAG 376
consensus_6003#0 GTGGACGCAACATTACCGCCATCTACGTGTACGACCGGCTCGGCAG--TGGCCGTGGAGG 654
* * * *** * * *
consensus_6003#1 ATCCGCAACGAGCTGGCCCGTCTGCCGGTGGAGGTGCAGGCGGTGGAGCTGCTGCACAAG 580
consensus_6003#2 ATCCTCAA-AAGCAAGCCTGCT---------GAGAATAGGTA-TAAAGTATTAACATAAA 425
consensus_6003#0 ATACGCCAGCATTACGAGCGGTGGCAT---CGGAAAGAACTACACCCGTATCAATCTGAA 711
** * * * * * * * * *
consensus_6003#1 GCCGCCTTTCCGCGACGG-GCTG---GGCAACTCCGTCTTCTGCCCCGACTATCT--GGT 634
consensus_6003#2 GTAGCATTTAGGGAATAG-ACAGTGAGGCAATTTTTAATTTACAATAAAGTAATTTAAAT 484
consensus_6003#0 GACGCAGCGTGGAAATGGCATGAACTTCCAGGTGGAAATCTACGGCCGCTAAGATGCTGT 771
* ** * * * ** * * * * *
consensus_6003#1 CG---------------------------------------------------------- 636
consensus_6003#2 CG---------------------------------------------------------- 486
consensus_6003#0 CGTCCCGCTTGATGAGCAACGACTTTGTAAACCAAACAGACGAAGAAATAGATAACATCC 831
**
consensus_6003#1 ------------------------------------------------------------
consensus_6003#2 ------------------------------------------------------------
consensus_6003#0 GCTGACATGCTCTTTCATAGTGCATACTAGCTACAAAAAAAAAAAGAAAAAGGCCACATG 891
consensus_6003#1 --------------
consensus_6003#2 --------------
consensus_6003#0 TGCTCGAGCTGCTG 905
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||