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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6018#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1326 fasta sequence
[TTGGTTTGCTTGCCTGCTTTCTTCCCGTTAGATGGCGTGGCTACCCATAGTAATCTACGTGCCGGCGCTCGCATTCAACCAGGTGACCGGCATCAATGTGCATCTCATCACACCCATCGTGTGTGTCATCTGCATCTTCTACACCTGCGTCGGAGGCCTGAAGGCCGTCGTGTGGACCGATGTGGTGCAGACAATCCTCATGTTCGGGGCAATGCTGCTGATCATCATCAAGGGAACGCTCGATGTCGGCGGCCTGTCGGTGGTGATCGAACGTGCCAAGGCGAGTGGTCGCATCGAGGGTCCCGATCTACGCTTTGACATGACCACGCGTCACAACATCTATTCGTGTGTGATCGGCGGTGTGGTGTACTGGCTGAAAACGAACGCCGTCAGTCAAAACATGATACAGCGGTACCTGTCTCTGCCCACGTTGGCCTCGGCAAAGAAAGCGCTCTGGACGTTCATCTTCGGAACGCTGGTCCTGCTGGCACTGTGCTGTTACAGTGGATTGCTAATCTACGCCAAGTACTATGACTGTGATCCTCTCACTACAAAACTGGCCAAAGCCAAGGATCAGCTGCTCCCGCTGCTCGTCATGGACACGTTGGGGGACTTTCCAGGGTTGCCGGGACTGTTCGTGGCGGGTGTGTTCTCCGCTGCGTTAAGCTCGCTCTCCACTGGTCTAAACTCCATGTCCGCGGTGGTGCTGGAAGACTTTTTCAAACCCTTTTCCAATCGTCCACTTTCCGAGAAACAAACGTCCATAATCATGCGAGCAGTGGTGGCTATCTTTGGTGCAATCTGCGTTGGGTTAGTGTTGGTAGTTGAGAAGCTTGGCTCTGTGCTTCAGCTGTCCATGAGCCTTGGCAGCGTAAGCAATGGTCCACTTTTGGGAATATTTACCCTCGGTGTGCTGATTCCATGGGCCAATGGAACGGGAGCCATTGTTGGTGGTACCATTGGTCTCTTGGTGATGATTTGGGTTTGCCTTAAAGCACAGTTAGCCATAGCTACTGGGGAGCTTGCATTCGACCTAAAGCCAGTCGACACTCAGGGTTGCAGCTATCACTTTATTGCCAGTGAACCGATGAGCATGCTTGCGATAAACACCACAAGCCTCTCGATAGACGCAACGCCAGTCGAACCCGAGTTTGCACTCTACCACATATCCTACCTGTGGTACACGACGATGGGAGCTCTAATCACCATCATCATCGCCGTCATTGTATCGTTCATCGTTGGGCCAAACAAACCGGACGAGATGAATCCCAACCTCTTCTCGCCATTCATCCAACGCATCCTTGTCCGCGTAGGATAGCGGCGCAC]
[+] EMBL BX615679 [TTGGTTTGCTTGCCTGCTTTCTTCCCGTTAGATGGCGTGGCTACCCATAGTAATCTACGTGCCGGCGCTCGCATTCAACCAGGTGACCGGCATCAATGTGCATCTCATCACACCCATCGTGTGTGTCATCTGCATCTTCTACACCTGCGTCGGAGGCCTGAAGGCCGTCGTGTGGACCGATGTGGTGCAGACAATCCTCATGTTCGGGGCAATGCTGCTGATCATCATCAAGGGAACGCTCGATGTCGGCGGCCTGTCGGTGGTGATCGAACGTGCCAAGGCGAGTGGTCGCATCGAGGGTCCCGATCTACGCTTTGACATGACCACGCGTCACAACATCTATTCGTGTGTGATCGGCGGTGTGGTGTACTGGCTGAAAACGAACGCCGTCAGTCAAAACATGATACAGCGGTACCTGTCTCTGCCCACGTTGGCCTCGGCAAAGAAAGCGCTCTGGACGTTCATCTTCGGAACGCTGGTCCTGCTGGCACTGTGCTGTTACAGTGGATTGCTAATCTACGCCAAGTACTATGACTGTGATCCTCTTACTACAAAACTGGCCAAAGCCAAGGATCAGCTGCTCCCGCTGCTCGTCATGGACACGTTGGGGGA ]
[+] EMBL BX617352 [ CGGTACCTGTCTCTGCCCACGTTGGCCTCGGCAAAGAAAGCGCTCTGGACGTTCATCTTCGGAACGCTGGTCCTGCTGGCACTGTGCTGTTACAGTGGATTGCTAATCTACGCCAAGTACTATGACTGTGATCCTCTCACTACAAAACTGGCCAAAGCCAAGGATCAGCTGCTCCCGCTGCTCGTCATGGACACGTTGGGGGACTTTCCAGGGTTGCCGGGACTGTTCGTGGCGGGTGTGTTCTCCGCTGCGTTAAGCTCGCTCTCCACTGGTCTAAACTCCATGTCCGCGGTGGTGCTGGAAGACTTTTTCAAACCCTTTTCCAATCGTCCACTTTCCGAGAAACAAACGTCCATAATCATGCGAGCAGTGGTGGCTATCTTTGGTGCAATCTGCGTTGGGGTAGTGTTGGTAGTTGAGAAGCTTGGCTCTGTGCTTCAGCTGTCCATGAGC ]
[+] EMBL BM624472 [ ccgGTTCATCTTCGGAACGCTGGTCCTGCTGGCACTGTGCTGTTACAGTGGACTGCTAATCTACGCCAAGTACTATGACTGTGATCCTCTCACTACAAAACTGGCCAAAGCCAAGGATCAGCTGCTCCCGCTGCTCGTCATGGACACACTGGGAGACTTTCCGGGGTTGCCGGGACTGTTCGTGGCGGGAGTGTTCTCCGCTGCGCTAAGCTCGCTCTCCACTGGACTAAACTCCATGTCCGCGGTGGTGCTGGAAGACTTTTTCAAACCCTTTTCCAATCGTCCACTTTCCGAGAAACAAACGTCCATAATCATGCGAGCAGTTGTGGCTATCTTTGGTGCAATCTGCGTTGGGTTAGTGTTGGTAGTTGAGAAGCTTGGCTCTGTGCTTCAGCTGTCCATGAGCCTTGGCAGCGTAAGCAATGGTCCACTTTTGGGAATATTTACCCTCGGTGTGCTGATTCCATGGGCCAATGGAACGGGAGCCATTGTTGGTGGTACCATTGGTCTCTTGGTGATGATTTGGGTTTGCCTTAAAGCACAGTTAGCCATAGCTACTGGGGAGCTTGCATTCGACCTAAAGCCAGTCGACACTCAGGGTTGCAGCTATCACTTTATTGCCAGTGAACCGATGAGCATGCTTGCGATAAACACCACAAGCCTCTCGATAGACGCAACG ]
[+] EMBL BX626427 [ TCTCCACTGGTCTAAACTCCATGTCCGCGGTGGTGCTGGAAGACTTTTTCAAACCCTTTTCCAATCGTCCACTTTCCGAGAAACAAACGTCCATAATCATGCGAGCAGTGGTGGCTATCTTTGGTGCAATCTGCGTTGGGTTAGTGTTGGTAGTTGAGAAGCTTGGCTCTGTGCTTCAGCTGTCCATGAGCCTTGGCAGCGTAAGCAATGGTCCACTTTTGGGAATATTCACTCTCGGTGTGCTGATTCCATGGGCCAATGGAACGGGAGCCATTGTTGGTGGTACCATTGGTCTCTTGGTGATGATTTGGGTTTGCCTTAAAGCACAGTTAGCCATAGCTACTGGGGAGCTTGCGTTCGACCTAAAGCCAGTCGACACTCAGGGTTGCAGCTATCACTTTATTGCCAGTGAACCGATGAGCATGCTTGCGATAAACACCACAAGCCTCTCGATAGACGCAACGCCAGTCGAACCCGAGTTTGCACTCTACCACATATCCTACCTGTGGTACACGACGATGGGAGCTCTAATCACCATCATCATCGCCGTCATTGTATCGTTCATCGTTGGGCCAAACAAACCGGACGAGATGAATCCCAACCTCTTCTCGCCATTCATCCAACGCATCCTTGTCCGCGTAGGATAGCGGCGCAC]
consensusID : consensus_6018#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1000 fasta sequence
[TCGAGGCGCGTGTGGACGATGTGTGCAGACAATCTCATGTTCGGGGCAATGCTGCTGATCATCATCAAGGGAACGCTCGATGTCGGCGGCCTGTCGGTGGTGATCGAACGTGCCAAGGCGAGTGGTCGCATCGAGGGTCCCGATCTACGCTTTGACATTGAACCAACGCGGTTCACAACAATCTAATTTCCGTGGTTGTGANTCGGGGCCGCGCTGGTTGGNTGGTTAACTTGGGGCTTGGAACAAACNGAACGGCCCGGTTGCAAGTTCAAAAAAGCACACATTGCATTACCAAGCCGGGGATAACCCTTGGTATACTTCTTGGCCCAACCGTTTTGGGAGCCCCTTCGGGCCACACACGGAACAAGAGGGCGGCTTCCTTCGTAAACCGGTTTCCAATTCATTATCCGGGGAAAAACCGGCCTTGGCGTTACCCTTTGGCAGNTTGGGCGCCAACGCTTAGATGCCTTGGCTNAACCACGTCGGGCGCGATTTTGGCTAAAGTCTTAAACCGGCCCCAAAGGTTAACTGTAAATAGGAACGCCTTNGGTTTGAATTCCCCNTCTTTACAACCTTNAACCACAAAAAACCTTNGGAGGCGCCAACAAACGCCCAAAACGCGGCAACTTCCCAACGAGCCTTAGNGCTTCCCCGCGAGAGCATTGCNCTTCCCGGTTCCCGAGTTTGGGGAACCAAACCGAGGTTTCTACGAGCGCGACGACGAAACCGTTTTATCGCCACAAACGCGGGGGATTTATATNAGCCCAGNCAGCGCTGATACACACTTTNGGGGCTATTCCCGAGGATNAGGCGCGACACGNAAGAGNTNTTAGGTATGGGTATCTCCGGTTACCCCACAGCGCGCTTTGAGGACGCGGTGTTTACTAAANCTGACCATTAACCCGAGGCACTTATCCNTTCCCCCAAAACGGTTNGGGGATTTCCCGTTTAACAAGAAGACGNTCACCACCAACAGTTCGGTTCACCCCGCGGACCTGCA]
[+] EMBL AL697228 [TCGAGGCGCGTGTGGACGATGTGTGCAGACAATCTCATGTTCGGGGCAATGCTGCTGATCATCATCAAGGGAACGCTCGATGTCGGCGGCCTGTCGGTGGTGATCGAACGTGCCAAGGCGAGTGGTCGCATCGAGGGTCCCGATCTACGCTTTGACATTGAACCAACGCGGTTCACAACAATCTAATTTCCGTGGTTGTGANTCGGGGCCGCGCTGGTTGGNTGGTTAACTTGGGGCTTGGAACAAACNGAACGGCCCGGTTGCAAGTTCAAAAAAGCACACATTGCATTACCAAGCCGGGGATAACCCTTGGTATACTTCTTGGCCCAACCGTTTTGGGAGCCCCTTCGGGCCACACACGGAACAAGAGGGCGGCTTCCTTCGTAAACCGGTTTCCAATTCATTATCCGGGGAAAAACCGGCCTTGGCGTTACCCTTTGGCAGNTTGGGCGCCAACGCTTAGATGCCTTGGCTNAACCACGTCGGGCGCGATTTTGGCTAAAGTCTTAAACCGGCCCCAAAGGTTAACTGTAAATAGGAACGCCTTNGGTTTGAATTCCCCNTCTTTACAACCTTNAACCACAAAAAACCTTNGGAGGCGCCAACAAACGCCCAAAACGCGGCAACTTCCCAACGAGCCTTAGNGCTTCCCCGCGAGAGCATTGCNCTTCCCGGTTCCCGAGTTTGGGGAACCAAACCGAGGTTTCTACGAGCGCGACGACGAAACCGTTTTATCGCCACAAACGCGGGGGATTTATATNAGCCCAGNCAGCGCTGATACACACTTTNGGGGCTATTCCCGAGGATNAGGCGCGACACGNAAGAGNTNTTAGGTATGGGTATCTCCGGTTACCCCACAGCGCGCTTTGAGGACGCGGTGTTTACTAAANCTGACCATTAACCCGAGGCACTTATCCNTTCCCCCAAAACGGTTNGGGGATTTCCCGTTTAACAAGAAGACGNTCACCACCAACAGTTCGGTTCACCCCGCGGACCTGCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6018#0 TTGGTTTGCTTGCCTGCTTTCTTCCCGTTAGATGGCGTGGCTACCCATAGTAATCTACGT 60
consensus_6018#1 ------------------------------------------------------------
consensus_6018#0 GCCGGCGCTCGCATTCAACCAGGTGACCGGCATCAATGTGCATCTCATCACACCCATCGT 120
consensus_6018#1 ------------------------------------------------------------
consensus_6018#0 GTGTGTCATCTGCATCTTCTACACCTGCGTCGGAGGCCTGAAGGCCGTCGTGTGGACCGA 180
consensus_6018#1 --------------------------------------TCGAGGC--GCGTGTGGAC-GA 19
* **** ********* **
consensus_6018#0 TGTGGTGCAGACAATCCTCATGTTCGGGGCAATGCTGCTGATCATCATCAAGGGAACGCT 240
consensus_6018#1 TGTG-TGCAGACAATC-TCATGTTCGGGGCAATGCTGCTGATCATCATCAAGGGAACGCT 77
**** *********** *******************************************
consensus_6018#0 CGATGTCGGCGGCCTGTCGGTGGTGATCGAACGTGCCAAGGCGAGTGGTCGCATCGAGGG 300
consensus_6018#1 CGATGTCGGCGGCCTGTCGGTGGTGATCGAACGTGCCAAGGCGAGTGGTCGCATCGAGGG 137
************************************************************
consensus_6018#0 TCCCGATCTACGCTTTGACAT--GACCA-CGCG--TCACAACA-TCTATTCGTGTGTGAT 354
consensus_6018#1 TCCCGATCTACGCTTTGACATTGAACCAACGCGGTTCACAACAATCTAATT-TCCGTGGT 196
********************* **** **** ******** **** * * *** *
consensus_6018#0 CGGCGGTGTGG--TGTACTGGCTGAAAACGAACGCCGTCAGTCAAAACATGATACAGCGG 412
consensus_6018#1 TGTGANTCGGGGCCGCGCTGGTTGGNTGGTTAACTTGGGGCTTGGAACA-AACNGAACGG 255
* * ** * **** ** * * * **** * * ***
consensus_6018#0 TACCTGTCTCTGCCCACGTTGGCCTCGGCAAAGAAAGCGCTCTGGACGTTCATCTTCGGA 472
consensus_6018#1 CCCGGTTGCAAGTTCAAAAAAGCACACATTGCATTACCAAGCCGGG-GATAACCCTTGGT 314
* * * ** ** * * * ** * * * * * **
consensus_6018#0 ACGCTGGTCCTGCTGGCACTGTGCTGTTACAGTGGATTGCTAATCTACGCCAAGTACTAT 532
consensus_6018#1 ATACT--TCTTGGCCCAACCGTTTTG----GGAGCCCCTTCGGGCCACAC-ACGGAACAA 367
* ** ** ** ** ** ** * * * ** * * * * *
consensus_6018#0 GACTGTGATCCTCTCACTACAAAACTGGCCAA------AGCCAAGGATCAGCTGCTCCCG 586
consensus_6018#1 GAGGGCGGCTTCCTTCGTAAACCGGTTTCCAATTCATTATCCGGGGAAAAACCGGCCTTG 427
** * * ** ** * * **** * ** *** * * * * *
consensus_6018#0 CTGCTCGTCATGGACACGTTGGGGGACTTTCCAGGGTTGCCGGGACTGT-TCGTGGCGGG 645
consensus_6018#1 GCGTTACCCTTTGGCAGNTTGGGCGCCAACGCTTAGATGCCTTGGCTNAACCACGTCGGG 487
* * * * * ** ***** * * * * **** * ** * * ****
consensus_6018#0 TGTGTTCTCCGCT---GCGTTAAGCTCGCTCTCCACTGGTCTAAACTCCAT--GTCCGCG 700
consensus_6018#1 CGCGATTTTGGCTAAAGTCTTAAACCGGCCC--CAAAGGTTAACTGTAAATAGGAACGCC 545
* * * * *** * **** * ** * ** *** * * ** * ***
consensus_6018#0 GTGGTGCTGGAAGAC--TTTTTCAAACCCTTTTCCAATCGTCCACTTTCCGAGA----AA 754
consensus_6018#1 TTNGGTTTGAATTCCCCNTCTTTACAACCTTNAACCACAAAAAACCTTNGGAGGCGCCAA 605
* * ** * * * ** * * **** * * ** ** *** **
consensus_6018#0 CAAACGTCCATAATCATGCGAGCAGTGGTGGCTATCTTTGGTGCAATCTGCGTTGGGTTA 814
consensus_6018#1 CAAACGCCCAAAACGCGGCAACT--TCCCAACGAGCCTTAGNG----CTTCCCCGCGAGA 659
****** *** ** ** * * * * * ** * * ** * * * *
consensus_6018#0 GTGTTGGTAGTTGAGAAGCTTGGCTCTGTGCTTCAGCTGTCCATGAGCCTTGGCAGCGTA 874
consensus_6018#1 GCATTGCNCTTCCCGGTTCCCGAGTTTGGGGAAC--CAAACCGAGGTTTCTACGAGCGCG 717
* *** * * * * * ** * * * ** * * ****
consensus_6018#0 AGCAATGGTCCACTTTTGGGAATATTTACCCTCGGTGTGCTGATTCCATGGGCCAATGGA 934
consensus_6018#1 A-CGACGAAACCGTTTTATCGCCACAAACGCGGGGGATTTATATNAGCCCAGNCAGCGC- 775
* * * * * **** * ** * ** * ** * ** *
consensus_6018#0 ACGGGAGCCATTGTTGGTGGTACCATTGGTCTCTTGGTGATGATTTGGGTTTGCCTTAAA 994
consensus_6018#1 -TGATACACACTTTNGGGGCTATTCCCGAGGATNAGGCG-CGACACGNAAGAGNTNTTAG 833
* * ** * * ** * ** * ** * ** * * * *
consensus_6018#0 GCACAGTTAGCCATAGCTACTGGGGAGCTTGCATTCGACCTAAAGCCAGTCGACACTCAG 1054
consensus_6018#1 GTATGGGTATCTCCGGTTACCCCACAGCGCGC-TTTGA---GGACGCGGTGTTTACTAAA 889
* * * ** * * *** *** ** ** ** * * ** *** *
consensus_6018#0 GGTTGCAGCTATCACTTTATTGCCAGTGAACCGATGAGCATGCTTGCGATAAACACCACA 1114
consensus_6018#1 NCTGACCATTAAC---------CCGAGGCACTTATC--CNTTCCCCCAAAACGGTTNGGG 938
* * ** * ** * ** ** * * * * * *
consensus_6018#0 AGCCTCTCGATAGACGCAACGCCAGTCGAACCCGAGTTTGCACTCTACCACATATCCTAC 1174
consensus_6018#1 GATTTCCCGTTTAACAAGAAGACGNTCACCACCAACAGTTCGGTTCACCCCG---CGGAC 995
** ** * ** * * * ** ** * * * * *** * * **
consensus_6018#0 CTGTGGTACACGACGATGGGAGCTCTAATCACCATCATCATCGCCGTCATTGTATCGTTC 1234
consensus_6018#1 CTGCA------------------------------------------------------- 1000
***
consensus_6018#0 ATCGTTGGGCCAAACAAACCGGACGAGATGAATCCCAACCTCTTCTCGCCATTCATCCAA 1294
consensus_6018#1 ------------------------------------------------------------
consensus_6018#0 CGCATCCTTGTCCGCGTAGGATAGCGGCGCAC 1326
consensus_6018#1 --------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||