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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6021#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 833 fasta sequence
[CCGTAGCAAAGTAATACATTATTAGATAAATCAAATTAATCTTAATAGTGAGGAAGGAAATAAGTTGGGAAAGAAGTAGTCGGGCAAGACAAGGCAGAATCGTTAGGTTGATCGTATGCAAGAATGATTGTAGTGCAAGGTTGCACACGCTGAAATCTCTTAGGTGTAAAAAATGGGTGTGGACACAGCTTGAATGAACGGTGTATTGTGTGATTGTGACAAGAACGGTTATGTTTTATGCTGAAGTGAAGAATCTAGAGCGACAATTCTTCCGTAAACAATGGAAAGACTAGAAAAAAGGCAAACCTTTTGGTAATTATCAAAGAGCTAAAAAATGAAGAAGC-AACCTTAAGCAAGCCAACAAAGCATTAGGTGGAGAAGTAAATGTGTGTGAAATGAAAGGATAATGAAGAAAATCACAATTATCGCTAATGGAGCATCTACAAGGTGAATGCGACTCCGTTGGAAGAAACTGCGAATGCGTAACACGTAGCCAATAAATATAATTTATTGAATGTCCCAATTTTTTGGGCAAAAACCACGAAATGCGAGAGACACGTCATGTAGTTAGTAGCCAAACATACTCACGAATGGAAGAAAATGACGTAGTGAGCT-AAAACTGAGGGGGAAAACATCTGACTTCCTTCCTCATCTAACATGTGTACGTC---TT-GCAAACTACAAT-TAGACCACCACATTAGTATTTAGCTAGCTACAAGGACTTGCATTGTGGTAAGGGCGATGAATAGGACGACGCAAGTGACGATACTAGCGCAAGATACAACAGTGATGAACCACTAACTAGGATAATGGCGTGAAGACAGCGATACAGTTCG]
[+] EMBL BM591309 [CCGTAGCAAAGTAATACATTATTAGATAAATCAAATTAATCTTAATAGTGAGGAAGGAAATAAGTTGGGAAAGAAGTAGTCGGGCAAGACAAGGCAGAATCGTTAGGTTGATCGTATGCAAGAATGATTGTAGTGCAAGGTTGCACACGCTGAAATCTCTTAGGTGTAAAAAATGGGTGTGGACACAGCTTGAATGAACGGTGTATTGTGTGATTGTGACAAGAACGGTTATGTTTTATGCTGAAGTGAAGAATCTAGAGCGACAATTCTTCCGTAAACAATGGAAAGACTAGAAAAAAGGCAAACCTTTTGGTAATTATCAAAGAGCTAAAAAATGAAGAAGC AACCTTAAGCAAGCCAACAAAGCATTAGGTGGAGAAGTAAATGTGTGTGAAATGAAAGGATAATGAAGAAAATCACAATTATCGCTAATGGAGCATCTACAAGGTGAATGCGACTCCGTTGGAAGAAACTGCGAATGCGTAACACGTAGCCAATAAATATAATTTATTGAATGTCCCAATTTTTTGGGCAAAAACCACGAAATGCGAGAGACACGTCATGTAGTTAGTAGCCAAACATACTCACGAATGGAAGAAAATGACGTAGTGAGCT AAAACTGAGGGGGAAAACATCTGACTTCCTTCCTCATCTAACATGTGTACGTC TT GCAAACTACAAT TAGACCACCACAT ]
[+] EMBL BX620232 [ CTTCCGTAAACAATGGAAAGACTAGAAAAAAGGCAAACCTTTTGGTAATTATCAAAGAGCTGAAAAATGAAGAATCAAACCTTAAGCAAGCCAACAAAGCATTAGGTGGAGAAGTAAATGTGTTTGAAATGAAAGGATAATGAAGAAAATCACAATTATCGCTAATGGAGCATCTACAAGGTGAATGCGACTCCGTTGGAAGAAACTGCGAATGCGTAACACGTAGCCAATAAATATAATTTATTGAATGTCCCAATTTTTTGGGCAAAAACCACGAAATGCGAGAGACACGTCATGTAGTTAGTAGCCAAACATACTCACGAATGGAAGAAAATGACGTAGTGAGCTAAAAACTGAGGGGGTAAACATCTGACTTCCTCCCTCATCTAACATGTGTACGTCACATTAGCAA TAAAATGTAGAGCAACAAACTAGTATTTAGCTAGCTACAAGGACTTGCATTGTGGTAAGGGCGATGAATAGGACGACGCAAGTGACGATACTAGCGCAAGATACAACAGTGATGAACCACTAACTAGGATAATGGCGTGAAGACAGCGATACAGTTCG]
consensusID : consensus_6021#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 563 fasta sequence
[AGCTCGTAGGCAGAATCCGCCGANGCTTAGGTGT-AAAAATGGGGAC-CAGCTTGAATGAACGGTGTATTGTGTGATTGTGACAAGAACGGTTATGTTTTATGCTGAAGCGAAGAATCTAGAGCGACAATTCTTCCGTAAACAATGGAAAGACTAGAAAAAAGGCAAACCTTTTGGTAATTATCAAAGAGCTGAAAAATGAAAGAATCAAACCTTAAGCAAGCCAACGAAAGCATTAGGTTGAGAAGTACAATGTGTTTGAAATGANAGGATAATGAAGAAGAGATCGACAATTATCGCTAGATGGAGCATCTACAAGGTGAATGCGACATCCGTTGGAGAGAAACTGCGAATGCGTAACACAGTAGCCGATAANACGTATAGACTCTTATTGAATGTNNCCAATTTTTATAGGGCAAAGAACCACGAAATGCGAGAGACACGTCATGTAGTTAGTAGCCAAACATACTCACGAATGGAAGAAAATGACGTAGTGAGCTAAAAACTGAGGGGGTAAACATCTGACTTCCTCCCTCATCTAACATGTGTACGTCACATTAGCAATA]
[+] EMBL BX466478 [AGCTCGTAGGCAGAATCCGCCGANGCTTAGGTGT AAAAATGGGGAC CAGCTTGAATGAACGGTGTATTGTGTGATTGTGACAAGAACGGTTATGTTTTATGCTGAAGCGAAGAATCTAGAGCGACAATTCTTCCGTAAACAATGGAAAGACTAGAAAAAAGGCAAACCTTTTGGTAATTATCAAAGAGCTGAAAAATGAAAGAATCAAACCTTAAGCAAGCCAACGAAAGCATTAGGTTGAGAAGTACAATGTGTTTGAAATGANAGGATAATGAAGAAGAGATCGACAATTATCGCTAGATGGAGCATCTACAAGGTGAATGCGACATCCGTTGGAGAGAAACTGCGAATGCGTAACACAGTAGCCGATAANACGTATAGACTCTTATTGAATGTNNCCAATTTTTATAGGGCAAAGAACCAC ]
[+] EMBL BX614953 [ tgaaatctCTTAGGTGTAAAAAATGGGGACACAGCTTGAATGAACGGTGTATTGTGTGATTGTGACAAGAACGGTTATGTTTTATGCTGAAGCGAAGAATCTAGAGCGACAATTCTTCTGTAAACAATGGAAAGACTAGAAAAAAGGCAAACCTTTTGGTAATTATCAAAGAGCTGAAAAATG AAGAATCAAACCTTAAGCAAGCCAAC AAAGCATTAGGTGGAGAAGTA AATGTGTTTGAAATGAAAGGATAATGAAGAA A ATC ACAATTATCGCTA ATGGAGCATCTACAAGGTGAATGCGAC TCCGTTGGA AGAAACTGCGAATGCGTAACAC GTAGCCAATAA A TATA A T TTATTGAATGT CCCAATTTTT T GGGCAAA AACCACGAAATGCGAGAGACACGTCATGTAGTTAGTAGCCAAACATACTCACGAATGGAAGAAAATGACGTAGTGAGCTAAAAACTGAGGGGGTAAACATCTGACTTCCTCCCTCATCTAACATGTGTACGTCACATTAGCAATA]
consensusID : consensus_6021#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 299 fasta sequence
[ACGTCTTGCAAACTACAATTAGACCACACACATTAGCAATAAAATGTAGAGCAACAAACTAGTATTTAGCTAGCTACAAGGACTTGCATTGTGGTAAGGGCGATGAATAGGACGACGCAAGTGACGATACTAGCGCAAGATACAGCAGTGATGAACCACTAACTAGGATAATGGCGTGAAGACAGCGATACAGTTCGGTGCTATTGAGGAGTAATGAAAAAAGAATGTAAATTCTACAAAATATCAAAATAACAGGCAACCGTTGCGCGATTGTAAGAATGCTGATGAATTGCAGGCAC]
[-] EMBL AGA282401 [ACGTCTTGCAAACTACAATTAGACCACACACATTAGCAATAAAATGTAGAGCAACAAACTAGTATTTAGCTAGCTACAAGGACTTGCATTGTGGTAAGGGCGATGAATAGGACGACGCAAGTGACGATACTAGCGCAAGATACAGCAGTGATGAACCACTAACTAGGATAATGGCGTGAAGACAGCGATACAGTTCGGTGCTATTGAGGAGTAATGAAAAAAGAATGTAAATTCTACAAAATATCAAAATAACAGGCAACCGTTGCGCGATTGTAAGAATGCTGATGAATTGCAGGCAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6021#0 CCGTAGCAAAGTAATACATTATTAGATAAATCAAATTAATCTTAATAGTGAGGAAGGAAA 60
consensus_6021#1 ------------------------------------------------------------
consensus_6021#2 ------------------------------------------------------------
consensus_6021#0 TAAGTTGGGAAAGAAGTAGTCGGGCAAGACAAGGCAGAATCGTTAGGTTGATCGTATGCA 120
consensus_6021#1 ------------------------------------------------------------
consensus_6021#2 ------------------------------------------------------------
consensus_6021#0 AGAATGATTGTAGTGCA-AGGTTGCACACGCTGAAATCTCTTAGGTGTAAAAAATGGGTG 179
consensus_6021#1 -----------AGCTCGTAGGCAGAATCCGCCGANG---CTTAGGTGTAAAAA-----TG 41
consensus_6021#2 ------------------------------------------------------------
consensus_6021#0 TGGACACAGCTTGAATGAACGGTGTATTGTGTGATTGTGACAAGAACGGTTATGTTTTAT 239
consensus_6021#1 GGGAC-CAGCTTGAATGAACGGTGTATTGTGTGATTGTGACAAGAACGGTTATGTTTTAT 100
consensus_6021#2 ------------------------------------------------------------
consensus_6021#0 GCTGAAGTGAAGAATCTAGAGCGACAATTCTTCCGTAAACAATGGAAAGACTAGAAAAAA 299
consensus_6021#1 GCTGAAGCGAAGAATCTAGAGCGACAATTCTTCCGTAAACAATGGAAAGACTAGAAAAAA 160
consensus_6021#2 ------------------------------------------------------------
consensus_6021#0 GGCAAACCTTTTGGTAATTATCAAAGAGCTAAAAAATGAAGAAGC--AACCTTAAGCAAG 357
consensus_6021#1 GGCAAACCTTTTGGTAATTATCAAAGAGCTGAAAAATGAAAGAATCAAACCTTAAGCAAG 220
consensus_6021#2 -----ACGTCTTGCAAACTACAATTAGACCACACACATTAGCAATAAAATGTAGAGCAA- 54
** * *** ** ** * * * * * * ** * *****
consensus_6021#0 CCAAC-AAAGCATTAGGTGGAGAAGTA-AATGTGTGTGAAATGAAAGGATAATGAAGAAA 415
consensus_6021#1 CCAACGAAAGCATTAGGTTGAGAAGTACAATGTGTTTGAAATGANAGGATAATGAAGAAG 280
consensus_6021#2 CAAAC--TAGTATTTAGCTAGCTACAAGGACTTGCATTGTG-GTAAGGGCGATGAATAGG 111
* *** ** *** * * * * ** * * *** ***** *
consensus_6021#0 A---TCACAATTATCGCTA-ATGGAGCATCTACAAGGTGAATGCGAC-TCCGTTGGA-AG 469
consensus_6021#1 AGATCGACAATTATCGCTAGATGGAGCATCTACAAGGTGAATGCGACATCCGTTGGAGAG 340
consensus_6021#2 ACGACG-CAAGTGACGATACTAGCGCAAGATACAGCAGTGATGAACCACTAACTAGGATA 170
* *** * ** ** * * **** *** * * *
consensus_6021#0 AAACTGCGAATGC-GTAACAC-GTAGCCAATAAA---TATAA---TTTATTGAATGTCCC 521
consensus_6021#1 AAACTGCGAATGC-GTAACACAGTAGCCGATAANACGTATAGACTCTTATTGAATGTNNC 399
consensus_6021#2 ATGGCGTGAAGACAGCGATACAGT--TCGGTGCTAT-TGAGGAGTAATGAAAAAAGAATG 227
* * *** * * * ** ** * * * * ** *
consensus_6021#0 AATTTTTT---GGGCAAA-AACCACGAAATGCGAGAGACACGTCATGTAGTTAGTAGCCA 577
consensus_6021#1 CAATTTTTATAGGGCAAAGAACCACGAAATGCGAGAGACACGTCATGTAGTTAGTAGCCA 459
consensus_6021#2 TAAATTCT-----ACAAAATATCA--AAATAACAGGCAACCGTTGCGCGATTG-----TA 275
* ** * **** * ** **** ** * *** * ** *
consensus_6021#0 AACATACTCACGAATGGAAGAAAATGACGTAGTGAGCTAAAA-CTGAGGGGGAAAACATC 636
consensus_6021#1 AACATACTCACGAATGGAAGAAAATGACGTAGTGAGCTAAAAACTGAGGGGGTAAACATC 519
consensus_6021#2 AGAATGCTGATGAATTGCAGGCAC------------------------------------ 299
* ** ** * **** * ** *
consensus_6021#0 TGACTTCCTTCCTCATCTAACATGTGTACGTCTTGCAAACTACAATTAGACCACCACATT 696
consensus_6021#1 TGACTTCCTCCCTCATCTAACATGTGTACGTCACATTAGCAATA---------------- 563
consensus_6021#2 ------------------------------------------------------------
consensus_6021#0 AGTATTTAGCTAGCTACAAGGACTTGCATTGTGGTAAGGGCGATGAATAGGACGACGCAA 756
consensus_6021#1 ------------------------------------------------------------
consensus_6021#2 ------------------------------------------------------------
consensus_6021#0 GTGACGATACTAGCGCAAGATACAACAGTGATGAACCACTAACTAGGATAATGGCGTGAA 816
consensus_6021#1 ------------------------------------------------------------
consensus_6021#2 ------------------------------------------------------------
consensus_6021#0 GACAGCGATACAGTTCG 833
consensus_6021#1 -----------------
consensus_6021#2 -----------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||