cluster # 6037

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Anopheles gambiae
cluster # 6037 cluster # 6037 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6037#0 length = 682 sequences # 4

consensus_6037#1 length = 597 sequences # 1

consensusID : consensus_6037#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 682
fasta sequence

                              [GGCGAAAAAGAGAAAAGTGATAATAGAAAACTCTCCCCCTCCTCATGATAAGGACTGCAATCGTCTGTCATCTGGTTGTGTATCTGGCTAGTTTTTAGTATTTCCCGCAGCCCGCGTGCCGCGCAAACTAAAACGCAATGGATACGGGTCGACGTACTGAGGGTGATGGTATGGAGCACGAGGAGCTCGCTGGATCGTTCACAGGAGCGAAG-GTTCGGCGTCCACCTCTTCCAGCGTATCTTCCACACTGCTGCCAACGGCGGACATAAAGCTGCCGGCAAACTTTTCCATCGAACGACTGCTACCTCACTCCGGCGCGAACCCAGTGTACCGGCCGACCGAGCTCGTCACCGGTGGGAACACCTCCCTGGCCGCGGTAGTGCCACGCGGCAAAGTGTTCAACCTGGTGCCCCGGCTGGTGGCGCCCGGTGGCCGCCCGAAGCTAGCGACGATGCACAGCAAAGAGCCAAAGTTTGTCCCGTTCGAACCGTACAAAGCGCGCGCCGTCACGCCGATCATCCCCGGGCGCAACAGCATCCCCGGCGGCTGGATCGCGCGCTAAAGCTGGCCAACCCGCAACAATCTCGACCTGAGCGTGCTCGTCTCGCAGATGTCGACCATCGCGGACAAGGAGCTGCGCACCAGTGCCGCCCCAGCGTCGGTCGAGGACGAGGAGCGGCAG]

[+] EMBL CNS08QOR             [GGCGAAAAAGAGAAAAGTGATAATAGAAAACTCTCCCCCTCCTCATGATAAGGACTGCAATCGTCTGTCATCTGGTTGTGTATCTGGCTAGTTTTTAGTATTTCCCGCAGCCCGCGTGCCGCGCAAACTAAAACGCAATGGATACGGGTCGACGTACTGAGGGTGATGGTATGGAGCACGAGGAGCTCGCTGGATCGTTCACAGGAGCGAAG GTTCGGCGT CACCTCTTCCAGCGTATCTT CACACTGCTGCCAACGGg                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL BX606973             [             AAAGTGATAATAGAAAACTCTTCCCCTCCTCATGATAAGGGCTGCAATCGTCTGTCATCTGGTTGTGCATCTGGCTAGTTTTTAGTATTTCCCGCAGCCCGCGTGCCGCGCAAACTAAAACGCAATGGATACGGGTCGACGTACTGAGGGTGATGGTATGGAGCACGAGGAGCTCGCTGGATCGTTTACAGGAGCGAAGCGATCGGCGTCCACCTCTTCCAGCGTATCTTCCACACTGCTGCCAACGGCGGACATAAAGCTGCCGGCAAACTTTTCCATCGAACGACTGCTACCTCACTCCGGCGCGAACCCAGTGTACCGGCCGACCGAGCTCGTCACCGGTGGGAACACCTCCCTGGCCGCGGTAGTGCCACGCGGCAAAGTGTTCAACCTGGTGCCCCGGCTGGTGGCGCCCGGTGGCCGCCCGAAGCTAGCGACGATGCACAGCAAAGAGCCAAAGTT                                                                                                                                                                                                                ]
[+] EMBL CNS092LB             [                 gGAGAAGAGAAAACGCTCCCCCTCCTCATGATAAGGACTGCAATCGTCTGTGATCTGGTTGTGTATCTGGCTAGTTTTTAGTATTTCCCGCAGCCCGCGTGCCGCGCAAACTAAAACGCAATGGATACGGGTCGACGTACTGAGGGTGATGGTATGGAGCACGAGGAGCTCGCTGGATCGTTCACAGGAGCGAAG GTTCGGCGTCCACCTCTTCCAGCGTATCTTCTACACTACTGCCAACGGCGGACATAAAGCTGCCGGCAAACTTTTCCATCGAACGACTGCTACCTCACTCCGGCGCCAATCCAGTGTACCGGCCGACCGAGCTCGTCACCGGTGGGAACACTTCCCTGGCAGCGGTAGTGCCACGCGGCAAAGTGTTCAACCTGGTGCCCCGGCTGGTGGCGCCCGGTGGCCGCCCGAAGCTAGCGACGATGCACAGCAAAGAGCCAAAGTTTGTCCCGTTCGAACCGTACAAAGCGCGCGCCGTCACGCCGATCATCCCCGGGCGCAACAGCATCCCCGGCGGCTGGATCGCGCGCTAAAGCTGGCCAACCCGCAACAATCTCGACCTGAGCGTGCTCGTCTCGCAGATGTCGACCATCGCGGACAAGGAGCTGCGCACCAGTGCCGCCCCAGCGTCGGTCGAGGACGAGGAGCGGCAG]
[+] EMBL BM606209             [                                                                    CATCTGGTTGTGCATCTGGCTAGTTTTTAGTATTTCCCGCATCCCGCGTGCCGCTCAAACTAAAACGCAATGGATACGGGTCGACGTACTGAGGGTGATGGTATGGAGCACGAGGAGCTCGCTGGATCGTTCACAGGAGCGAAGCGATCGGCGTCCACCTCTTCCAACGTAACTTCCACACTGCTGCCAACGGCGGACATAAAGCTACCGGCAAACTTTTCCATCGAACGACTGCTACCTCACTCCGGCGCGAACCCAGTGTACCGGCCGACTGAGCTCGTCACCGGTGGGAACACCTCCCTGGCCGCGGTAGTGCCACGCGGAAAAGTGTTCAACCTGGTGCCCCGGCTGGTAGCGCCCGGTGGCCGCCCGAAGCTAGCGACGATGCACAGCAAAGAGCCAAAATTTGTCCCGTTCGAACCGTACAAAG   GGGCCGTCACGCCGATCATCCCCGGGCGCAACA                                                                                                                                                     ]




>consensus_6037#0
GGCGAAAAAGAGAAAAGTGATAATAGAAAACTCTCCCCCTCCTCATGATAAGGACTGCAA
TCGTCTGTCATCTGGTTGTGTATCTGGCTAGTTTTTAGTATTTCCCGCAGCCCGCGTGCC
GCGCAAACTAAAACGCAATGGATACGGGTCGACGTACTGAGGGTGATGGTATGGAGCACG
AGGAGCTCGCTGGATCGTTCACAGGAGCGAAGGTTCGGCGTCCACCTCTTCCAGCGTATC
TTCCACACTGCTGCCAACGGCGGACATAAAGCTGCCGGCAAACTTTTCCATCGAACGACT
GCTACCTCACTCCGGCGCGAACCCAGTGTACCGGCCGACCGAGCTCGTCACCGGTGGGAA
CACCTCCCTGGCCGCGGTAGTGCCACGCGGCAAAGTGTTCAACCTGGTGCCCCGGCTGGT
GGCGCCCGGTGGCCGCCCGAAGCTAGCGACGATGCACAGCAAAGAGCCAAAGTTTGTCCC
GTTCGAACCGTACAAAGCGCGCGCCGTCACGCCGATCATCCCCGGGCGCAACAGCATCCC
CGGCGGCTGGATCGCGCGCTAAAGCTGGCCAACCCGCAACAATCTCGACCTGAGCGTGCT
CGTCTCGCAGATGTCGACCATCGCGGACAAGGAGCTGCGCACCAGTGCCGCCCCAGCGTC
GGTCGAGGACGAGGAGCGGCAG

consensusID : consensus_6037#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 597
fasta sequence

                              [CCGCACAACAAAGGCTCAGTCGTGGAAAAAGAGAAAAGTGATAATAGAAAACTATCCCCCTCCTCATGATAAGGGCTGCAATCGTCTGTCATCTGGTTGTGCATCTGGCTAGTTTTTAGTATTTCCCGCAGCCCGCGTGCCGCGCAAACTAAAACGCAATGGATACGGGTAACAAGTGTGCAGACATGACCTAGTTGAGCGCTAATCTAATCACATCACATCTCGCTCGCTCGCTCGCTTCTCCCGTTGCAGGTCGACGTACTGAGGGTGATGGTATGGAGCACGAGGAGCTCGCTGGATCGTTCACAGGAGCGAAGCGATCGGCGTCCACCTCTTCCAGCGTAACTTCCACACTGCTGCCAACGGCGGACATAAAGCTACCGGCAAACTTTTCCATCGAACGACTGCTACCTCACTCCGGCGCGAACCCAGTGTACCGGCCGACTGAGCTCGTCACCGGTGGGAACACCTCCCTGGCCGCGGTAGTGCCACGCGGCAAAGTGTTCAACCTGGTGCCCCGGCTGGTAGCGCCCGGTGGCCGCCCGAAGCTAGCGACGATGCACAGCAAAGAGCCAAAATTTGTCCCGTTCGAACCGT]

[+] EMBL BM612545             [CCGCACAACAAAGGCTCAGTCGTGGAAAAAGAGAAAAGTGATAATAGAAAACTATCCCCCTCCTCATGATAAGGGCTGCAATCGTCTGTCATCTGGTTGTGCATCTGGCTAGTTTTTAGTATTTCCCGCAGCCCGCGTGCCGCGCAAACTAAAACGCAATGGATACGGGTAACAAGTGTGCAGACATGACCTAGTTGAGCGCTAATCTAATCACATCACATCTCGCTCGCTCGCTCGCTTCTCCCGTTGCAGGTCGACGTACTGAGGGTGATGGTATGGAGCACGAGGAGCTCGCTGGATCGTTCACAGGAGCGAAGCGATCGGCGTCCACCTCTTCCAGCGTAACTTCCACACTGCTGCCAACGGCGGACATAAAGCTACCGGCAAACTTTTCCATCGAACGACTGCTACCTCACTCCGGCGCGAACCCAGTGTACCGGCCGACTGAGCTCGTCACCGGTGGGAACACCTCCCTGGCCGCGGTAGTGCCACGCGGCAAAGTGTTCAACCTGGTGCCCCGGCTGGTAGCGCCCGGTGGCCGCCCGAAGCTAGCGACGATGCACAGCAAAGAGCCAAAATTTGTCCCGTTCGAACCGT]




>consensus_6037#1
CCGCACAACAAAGGCTCAGTCGTGGAAAAAGAGAAAAGTGATAATAGAAAACTATCCCCC
TCCTCATGATAAGGGCTGCAATCGTCTGTCATCTGGTTGTGCATCTGGCTAGTTTTTAGT
ATTTCCCGCAGCCCGCGTGCCGCGCAAACTAAAACGCAATGGATACGGGTAACAAGTGTG
CAGACATGACCTAGTTGAGCGCTAATCTAATCACATCACATCTCGCTCGCTCGCTCGCTT
CTCCCGTTGCAGGTCGACGTACTGAGGGTGATGGTATGGAGCACGAGGAGCTCGCTGGAT
CGTTCACAGGAGCGAAGCGATCGGCGTCCACCTCTTCCAGCGTAACTTCCACACTGCTGC
CAACGGCGGACATAAAGCTACCGGCAAACTTTTCCATCGAACGACTGCTACCTCACTCCG
GCGCGAACCCAGTGTACCGGCCGACTGAGCTCGTCACCGGTGGGAACACCTCCCTGGCCG
CGGTAGTGCCACGCGGCAAAGTGTTCAACCTGGTGCCCCGGCTGGTAGCGCCCGGTGGCC
GCCCGAAGCTAGCGACGATGCACAGCAAAGAGCCAAAATTTGTCCCGTTCGAACCGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6037#0      ---------------------GGCGAAAAAGAGAAAAGTGATAATAGAAAACTCTCCCCC 39
consensus_6037#1      CCGCACAACAAAGGCTCAGTCGTGGAAAAAGAGAAAAGTGATAATAGAAAACTATCCCCC 60
                                           *  ***************************** ******

consensus_6037#0      TCCTCATGATAAGGACTGCAATCGTCTGTCATCTGGTTGTGTATCTGGCTAGTTTTTAGT 99
consensus_6037#1      TCCTCATGATAAGGGCTGCAATCGTCTGTCATCTGGTTGTGCATCTGGCTAGTTTTTAGT 120
                      ************** ************************** ******************

consensus_6037#0      ATTTCCCGCAGCCCGCGTGCCGCGCAAACTAAAACGCAATGGATACGGGT---------- 149
consensus_6037#1      ATTTCCCGCAGCCCGCGTGCCGCGCAAACTAAAACGCAATGGATACGGGTAACAAGTGTG 180
                      **************************************************          

consensus_6037#0      ------------------------------------------------------------
consensus_6037#1      CAGACATGACCTAGTTGAGCGCTAATCTAATCACATCACATCTCGCTCGCTCGCTCGCTT 240
                                                                                  

consensus_6037#0      --------------CGACGTACTGAGGGTGATGGTATGGAGCACGAGGAGCTCGCTGGAT 195
consensus_6037#1      CTCCCGTTGCAGGTCGACGTACTGAGGGTGATGGTATGGAGCACGAGGAGCTCGCTGGAT 300
                                    **********************************************

consensus_6037#0      CGTTCACAGGAGCGAAG-GTTCGGCGTCCACCTCTTCCAGCGTATCTTCCACACTGCTGC 254
consensus_6037#1      CGTTCACAGGAGCGAAGCGATCGGCGTCCACCTCTTCCAGCGTAACTTCCACACTGCTGC 360
                      ***************** * ************************ ***************

consensus_6037#0      CAACGGCGGACATAAAGCTGCCGGCAAACTTTTCCATCGAACGACTGCTACCTCACTCCG 314
consensus_6037#1      CAACGGCGGACATAAAGCTACCGGCAAACTTTTCCATCGAACGACTGCTACCTCACTCCG 420
                      ******************* ****************************************

consensus_6037#0      GCGCGAACCCAGTGTACCGGCCGACCGAGCTCGTCACCGGTGGGAACACCTCCCTGGCCG 374
consensus_6037#1      GCGCGAACCCAGTGTACCGGCCGACTGAGCTCGTCACCGGTGGGAACACCTCCCTGGCCG 480
                      ************************* **********************************

consensus_6037#0      CGGTAGTGCCACGCGGCAAAGTGTTCAACCTGGTGCCCCGGCTGGTGGCGCCCGGTGGCC 434
consensus_6037#1      CGGTAGTGCCACGCGGCAAAGTGTTCAACCTGGTGCCCCGGCTGGTAGCGCCCGGTGGCC 540
                      ********************************************** *************

consensus_6037#0      GCCCGAAGCTAGCGACGATGCACAGCAAAGAGCCAAAGTTTGTCCCGTTCGAACCGTACA 494
consensus_6037#1      GCCCGAAGCTAGCGACGATGCACAGCAAAGAGCCAAAATTTGTCCCGTTCGAACCGT--- 597
                      ************************************* *******************   

consensus_6037#0      AAGCGCGCGCCGTCACGCCGATCATCCCCGGGCGCAACAGCATCCCCGGCGGCTGGATCG 554
consensus_6037#1      ------------------------------------------------------------
                                                                                  

consensus_6037#0      CGCGCTAAAGCTGGCCAACCCGCAACAATCTCGACCTGAGCGTGCTCGTCTCGCAGATGT 614
consensus_6037#1      ------------------------------------------------------------
                                                                                  

consensus_6037#0      CGACCATCGCGGACAAGGAGCTGCGCACCAGTGCCGCCCCAGCGTCGGTCGAGGACGAGG 674
consensus_6037#1      ------------------------------------------------------------
                                                                                  

consensus_6037#0      AGCGGCAG 682
consensus_6037#1      --------