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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6038#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 602 fasta sequence
[AGATTGCCCNGGTTTNTTNCGTNCGATCTCCCTGTCACGNTCGACTGGTTGATCAACATCTTCAAACAGGCCAACCAGATCGAACAGTCGAAGGAAAGCAATCTGTTCGATGATTTGCCCTGTGGGCTGGATCTCGAGTTCTGAAACTGTGAAGTGCTCAACTGCTATGCACCTGTGAACCGTGCATGCGTACTGAGACTGCGTACTGTGACTGTCGCACAAGCAAGCCTGCCGACGCGGGTTGTTTCAGTGGCGATGGGCAGCTCGTGGCAACGGGACAGGCATGGANTGCAAGCATTAAANNGATTCTTGGCACGTCGATCGGATGCTTGCTAAACTCGGCACCGGAACGACACTGGAGCCGGGTCGTGAACAGCACGCCCATCCGGTCATACGCACGCTGTCACGATCATACGGACGAAGGTATCCTATCTGGAGTTTCACCCGAAGGATCAAATACTTTGCCCTCGGGGTCNNACGCGGATCACAACCGTGAAGCTGTACGACCATTTCGAAAGCATCGGTCANAGAAGGCTCACAAGGTGCTGAATGATTGTGTAGCCGGTAGCCGCTGCATCGCGGTACATCCTTACGGATGACTA]
[+] EMBL AL693635 [AGATTGCCCNGGTTTNTTNCGTNCGATCTCCCTGTCACGNTCGACTGGTTGATCAACATCTTCAAACAGGCCAACCAGATCGAACAGTCGAAGGAAAGCAATCTGTTCGATGATTTGCCCTGTGGGCTGGATCTCGAGTTCTGAAACTGTGAAGTGCTCAACTGCTATGCACCTGTGAACCGTGCATGCGTACTGAGACTGCGTACTGTGACTGTCGCACAAGCAAGCCTGCCGACGCGGGTTGTTTCAGTGGCGATGGGCAGCTCGTGGCAACGGGACAGGCATGGANTGCAAGCATTAAANNGATTCTTGGCACGTCGATCGGATGCTTGCTAAACTCGGCACCGGAACGACACTGGAGCCGGGTCGTGAACAGCACGCCCATCCGGTCATACGCACGCTGTCACGATCATACGGACGAAGGTATCCTATCTGGAGTTTCACCCGAAGGATCAAATACTTTGCCCTCGGGGTCNNACGCGGATCACAACCGTGAAGCTGTACGACCATTTCGAAAGCATCGGTCANAGAAGGCTCACAAGGTGCTGAATGATTGTGTAGCCGGTAGCCGCTGCATCGCGGTACATCCTTACGGATGACTA]
consensusID : consensus_6038#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 569 fasta sequence
[CCGACTGCTGGGAAAGTTCTTTCNGNTCCG--AAATACACATTTTTCCAACCATGAAAGACCAGGAGACGCCGCAGGGATAAGAATTTGCTGAAATGCCGCGAACAGCTGTACCGGATGATGATAAGCCAACTGTTCTACGATGGGTATCATTCAGTGGCGGTAGAGCTCACCAACCTGGTGCGTGCCGATCCTCCCTGTCCACCGAGCGACCGGTTGATGAACATCTTCAAACAGGCCAACCAGATCGAACAGTCGAAGGAAAGCAATCTGTTCGATGATTTGCCCTGTGGGCTGGATCTCGAGTTCGAAACGGAAGGCTCAACGCTAGCACCGGAACCGGCAGCGTACGAGACTGCGTACGTGACGTCGCACAAGCAAGCCTGCCGAGCGGGTTGTTTCAGTGGCGATGGGCAGCTCGTGGCAACGGGCAGCATGGATGCAAGCATAAAGATTTTGGACGTCGATCGGATGCTTGCTAAATCGGCACCGGAAGACATGGAGCCGGGTCGTGAACAGCACGCCCATCCGGTCATACGCACGCTGTACGATCATACGGACGAAGTGTCGTA]
[+] EMBL BX619215 [CCGACTGCTGGGAAAGTTCTTTCNGNTCCG AAATACACATTTTTCCAACCATGAAAGACCAGGAGACGCCGCAGGGATAAGAATTTGCTGAAATGCCGCGAACAGCTGTACCGGATGATGATAAGCCAACTGTTCTACGATGGGTATCATTCAGTGGCGGTAGAGCTCACCAACCTGGTGCGTGCCGATCCTCCCTGTCCACCGAGCGACCGGTTGATGAACATCTTCAAACAGGCCAACCAGATCGAACAGTCGAAGGAAAGCAATCTGTTCGATGATTTGCCCTGTGGGCTGGATCTCGAGTTCGAAACGGAAGGCTCAACGCTAGCACCGGAACCGGCAGCGTACGAGACTGCGTACGTGACGTCGCACAAGCAAGCCT ]
[+] EMBL BX605601 [ TCTTTC G TCCGTAAAATACACGTTTTTTCAACCATGAAAGACCAAGAGACGCCGCA GGATAAGAATTTGCTGAAATGCCGCGAACAGCTGTACCGGATGATGATAAGCCAATTGTTCTACGATGGGTATCATTCAGTCGCGGTAGAGCTCACCAACCTGGTGCGTGCCGATCCACCCTGTCCACCGAGCGATCGGTTGATGAATATCTTCAAACAGGCCAATCAGATCGAACAATCGAAGGAAAGCAATCTGTTCCATGATTTGCCCTGTGGGCTGGATCTCGAGTTCGAAACGGAAGGCTCAACGCTAGCACCGGAACCGGCAGCGTACGAGACTGCGTACGTGACGTCGCACAAGCAAGCGTGCCGAGCGGGTTGTTTCAGTGGCGATGGGCAGCTCGTGGCAACGGGCAGCATGGATGCAAGCATAAAGATTTTGGACGTCGATCGGATGCTTGCTAAATCGGCACCGGAAGACATGGAGCCGGGTCGTGAACAGCACGCCCATCCGGTCATACGCACGCTGTACGATCATACGGACGAAGTGTCGTA]
consensusID : consensus_6038#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 565 fasta sequence
[AATCCGAGGGTACGACTGCTGGAAGTCTTCGTCCGTAAATACACATTTTTCCACCATGAAAGACAGAGACGCCGCATGATAAGAATTTGGTGAAATGCCGCGAACAGCTGTACCGGATGATGATAAGCCNACTGTTCTACGATGGGTATCATTCNGTGGGGGTAGAGCTCAACNAACTGGTGCGTGCGATCCTCCCTGTCACGGAGCGACGGTTGATGAACATCTTCAAAGGGCAACAATCAACAGTCAGAAACACTGGCATATTGCCTGTGGGCTGGATCTCGCAGTTCCGAAACGGAAAGGTCAACGGCTAGCGACCGTGAACCCGGGAGCGTACGAGACACTTGCGTACTGTGACGTCGCACAAGCCANCTGGCGAGCGGGGTTGTNCTCACGTGGCGATGTGGCACGCTCGTGGCAACGGGCCAGCGATTGGATTCACAGCTAAAAGANTTTTGGACGTCCATCGGCGTGCTTTGCTAAANTCCGGAGCCGGGAACGACATNGAGCCCNGTCCTTAACCANCGACGCCCCNCCCGGTNCATAACGCACCGCTGTTCGAGNC]
[+] EMBL AL935022 [AATCCGAGGGTACGACTGCTGGAAGTCTTCGTCCGTAAATACACATTTTTCCACCATGAAAGACAGAGACGCCGCATGATAAGAATTTGGTGAAATGCCGCGAACAGCTGTACCGGATGATGATAAGCCNACTGTTCTACGATGGGTATCATTCNGTGGGGGTAGAGCTCAACNAACTGGTGCGTGCGATCCTCCCTGTCACGGAGCGACGGTTGATGAACATCTTCAAAGGGCAACAATCAACAGTCAGAAACACTGGCATATTGCCTGTGGGCTGGATCTCGCAGTTCCGAAACGGAAAGGTCAACGGCTAGCGACCGTGAACCCGGGAGCGTACGAGACACTTGCGTACTGTGACGTCGCACAAGCCANCTGGCGAGCGGGGTTGTNCTCACGTGGCGATGTGGCACGCTCGTGGCAACGGGCCAGCGATTGGATTCACAGCTAAAAGANTTTTGGACGTCCATCGGCGTGCTTTGCTAAANTCCGGAGCCGGGAACGACATNGAGCCCNGTCCTTAACCANCGACGCCCCNCCCGGTNCATAACGCACCGCTGTTCGAGNC]
consensusID : consensus_6038#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 497 fasta sequence
[CCCGAGGCNNCATAAAGATTTTGGACGTCGATCGGATGCTTGCTAAATCGGCACCGGAAGACATGGAGCCGGGTCGTGAACAGCACGCCCATCCGGTCATACGCACGCTGTACGATCATACGGACGAAGTATCCTATCTGGAGTTTCACCCGAAGGATCAAATACTTGCCTCGGGGTCACGCTGATACTACACCGTGGAAGCTGTAACGACATTTCCGAANATGCATCGGTAAAGAAGGCTCACAAGCGATGCCTGAGCCTTGAATATGGTCGTTGCCCCGGAGTTGGCCCGGCCTTGACNTAANTTTCAGGGCCAGGATTATACCACCAAATTTCCCTTAAACCCCAGGGGTGAACGTAACTATTTGGGGCCAGGGTCCGTGCACGACGGAAGACACAAACGGTGGCTGCGGATGTACGAATGTAACAGTACGTGGCGCTAANTGCTCTCTGGTAAGCGCAAATTACCCGCGCAAACATGCACAACAGGTGCAAGT]
[+] EMBL AL933079 [CCCGAGGCNNCATAAAGATTTTGGACGTCGATCGGATGCTTGCTAAATCGGCACCGGAAGACATGGAGCCGGGTCGTGAACAGCACGCCCATCCGGTCATACGCACGCTGTACGATCATACGGACGAAGTATCCTATCTGGAGTTTCACCCGAAGGATCAAATACTTGCCTCGGGGTCACGCTGATACTACACCGTGGAAGCTGTAACGACATTTCCGAANATGCATCGGTAAAGAAGGCTCACAAGCGATGCCTGAGCCTTGAATATGGTCGTTGCCCCGGAGTTGGCCCGGCCTTGACNTAANTTTCAGGGCCAGGATTATACCACCAAATTTCCCTTAAACCCCAGGGGTGAACGTAACTATTTGGGGCCAGGGTCCGTGCACGACGGAAGACACAAACGGTGGCTGCGGATGTACGAATGTAACAGTACGTGGCGCTAANTGCTCTCTGGTAAGCGCAAATTACCCGCGCAAACATGCACAACAGGTGCAAGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6038#1 -----------CCGACTGCTGGGAAAGTTCTTTCNGNTCCGAAATACACATTTTTCCAAC 49
consensus_6038#2 AATCCGAGGGTACGACTGCTGGAAG-----TCTTCGTCCGTAAATACACATTTTTCCA-C 54
consensus_6038#0 ------------------------------------------------------------
consensus_6038#3 --------CCCGAGGCNNCATAAAGATTTTGGACGTCGATCGGATGCTTGCTAAATCGGC 52
consensus_6038#1 CATGAAAGACCAGGAGACGCCGCAGGGATAAGAATTTGCTGAAATGCCGCGAACAGCTGT 109
consensus_6038#2 CATGAAAGAC--AGAGACGCCGCATG-ATAAGAATTTGGTGAAATGCCGCGAACAGCTGT 111
consensus_6038#0 ------------------------------------------------------------
consensus_6038#3 ACCGGAAGACATGGAGCCGGGTCGTGAACAGCACGCCCATCCGGTCATACGCAC-GCTGT 111
consensus_6038#1 ACCGGATGATGATAAGCCAACTGTTCTACGATGGGTATCATTCAGTGGCGGTAGAGCTCA 169
consensus_6038#2 ACCGGATGATGATAAGCCNACTGTTCTACGATGGGTATCATTCNGTGGGGGTAGAGCTCA 171
consensus_6038#0 ----------------------------------------------------AGATTGCC 8
consensus_6038#3 AC--GATCAT-ACGGACGAAGTATCCTATCTGGAGTTTCACCCGAAGGATCAAATACTTG 168
*
consensus_6038#1 CCAACCTGGTGCGTGCCGATCCTCCCTGTCCACCGAGCGACCGGTTGATGAACATCTTCA 229
consensus_6038#2 ACNAACTGGTGCGTGC-GATCCTCCCTGTC-ACGGAGCGAC-GGTTGATGAACATCTTCA 228
consensus_6038#0 CNGGTTTNTTNCGTNC-GATC-TCCCTGTC-AC-GNTCGACTGGTTGATCAACATCTTCA 64
consensus_6038#3 CCT--CGGGGTCACGCTGATACTAC------ACCGTGGAAGCTGT--AACGACATTTCCG 218
* * *** * * ** * * ** * **** * *
consensus_6038#1 AACAGGCCAACCAGATCGAACAGTCGAAGGAAAGCAATCTGTTCGATGATTTGCCCTGTG 289
consensus_6038#2 A--AGGGCAAC--AATC-AACAGTCAGAAACA----------CTGGCATATTGCC-TGTG 272
consensus_6038#0 AACAGGCCAACCAGATCGAACAGTCGAAGGAAAGCAATCTGTTCGATGATTTGCCCTGTG 124
consensus_6038#3 AA-NATGCATCGGTAAAGAAGGCTCACAAGCGA------TGCCTGA-GCCTTGAA-TATG 269
* ** * * ** ** * * *** * **
consensus_6038#1 GGCTGGATCTCG-AGTTC-GAAAC---GGAAGGCTCAACG-CTA-GCACC---GGAACCG 339
consensus_6038#2 GGCTGGATCTCGCAGTTCCGAAAC---GGAAAGGTCAACGGCTA-GCGACCGTGAACCCG 328
consensus_6038#0 GGCTGGATCTCG-AGTTCTGAAACTGTGAAGTGCTCAACTGCTATGCACCTGTGAACCGT 183
consensus_6038#3 GTCGTTGCCCCGGAGTT--GGCCC------GGCCTTGACN--TAANTTTC---AGGGCCA 316
* * * ** **** * * * ** ** * *
consensus_6038#1 GCA-GCGTAC-GAGAC---TGCGTAC-GTGAC-GTCGCACAAGCAAGCCTGCCGAGC-GG 391
consensus_6038#2 GGA-GCGTAC-GAGACACTTGCGTACTGTGAC-GTCGCACAAGCCANCTGGCGAGCG-GG 384
consensus_6038#0 GCATGCGTACTGAGAC---TGCGTACTGTGACTGTCGCACAAGCAAGCCTGCCGACGCGG 240
consensus_6038#3 GGA-TTATACCACCAAATTTCCCTTAAACCCCAGGGGTGAACGTAACTATTTGGGGCCAG 375
* * *** * * * * * * * * * * *
consensus_6038#1 GTTGTT-TCA-GTGGCGATG-GGCA-GCTCGTGGCAACGGGC-AGCA--TGGAT----GC 440
consensus_6038#2 GTTGTNCTCACGTGGCGATGTGGCACGCTCGTGGCAACGGGCCAGCGATTGGATTC--AC 442
consensus_6038#0 GTTGTT-TCA-GTGGCGATG-GGCA-GCTCGTGGCAACGGGACAGGCATGGANTGCAAGC 296
consensus_6038#3 GGTCCGTGCACGACG-GAAGACACA-AACGGTGGCTGCGGATGTACGAATGTA-----AC 428
* * ** * * ** * ** ***** *** * *
consensus_6038#1 AAGCATAAAGATTTTGG-ACGTCGATCGG-ATGCTT-GCTAAAT--CGGCACCGGAA--G 493
consensus_6038#2 AGCTAAAAGANTTTTGG-ACGTCCATCGGCGTGCTTTGCTAAANTCCGGAGCCGGGAACG 501
consensus_6038#0 ATTAAANNGATTCTTGGCACGTCGATCGG-ATGCTT-GCTAAACT-CGGCACCGGAA-CG 352
consensus_6038#3 AG-TACGTGGCGCTAAN--TGCTCTCTGGTAAGC---GCAAATTACCCGCGCAAACATGC 482
* * * * ** ** ** ** * * * *
consensus_6038#1 ACA-TGGAGCCGGGTCGTGAACAGCACGCCCATCCGGTCATACGCACGCTG-TACGATCA 551
consensus_6038#2 ACA-TNGAGCCCNGTCCTTAAC--CANCGACGCCCCNCCCGGTNCATAACG-CACCGCTG 557
consensus_6038#0 ACACTGGAGCCGGGTCGTGAACAGCACGCCCATCCGGTCATACGCACGCTGTCACGATCA 412
consensus_6038#3 ACAACAGGTGCAAGT--------------------------------------------- 497
*** * * **
consensus_6038#1 TACGGACGAAGTGTCGTA------------------------------------------ 569
consensus_6038#2 TTCGAGNC---------------------------------------------------- 565
consensus_6038#0 TACGGACGAAGGTATCCTATCTGGAGTTTCACCCGAAGGATCAAATACTTTGCCCTCGGG 472
consensus_6038#3 ------------------------------------------------------------
consensus_6038#1 ------------------------------------------------------------
consensus_6038#2 ------------------------------------------------------------
consensus_6038#0 GTCNNACGCGGATCACAACCGTGAAGCTGTACGACCATTTCGAAAGCATCGGTCANAGAA 532
consensus_6038#3 ------------------------------------------------------------
consensus_6038#1 ------------------------------------------------------------
consensus_6038#2 ------------------------------------------------------------
consensus_6038#0 GGCTCACAAGGTGCTGAATGATTGTGTAGCCGGTAGCCGCTGCATCGCGGTACATCCTTA 592
consensus_6038#3 ------------------------------------------------------------
consensus_6038#1 ----------
consensus_6038#2 ----------
consensus_6038#0 CGGATGACTA 602
consensus_6038#3 ----------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||