cluster # 6044

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 6044 cluster # 6044 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6044#0 length = 677 sequences # 4

consensus_6044#1 length = 360 sequences # 1

consensusID : consensus_6044#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 677
fasta sequence

                              [CCGCCCACGCGTCCGCCACCATCCGATCAAGCCACAACAATTGTTTGCAGCTTCGTTTGCGGGGAAACGAAATTTAGCACGATGCCGAAATATTACTGTGATTACTGTGACACCTACCTGACGCACGATTCGCCCAGCGTCCGGAAGACGCACTGCACCGGCCGAAAACACAAGGACAATGTGAAATTTTACTACCAGAAATGGATGGAGGAGCAGGCGCAGCATCTGATCGACGCGACGACCGCAGCGTACAAGGCGGGCAAGATTGCCCCGAATCCGTTCACCGCGGGACCACCGAAGCCGAACATTTCCATCCCACCGCCGACGATGAACATGCCGCCTAGGCCGGGCATGATACCGGGCATGCCGGCTGGCGCACCGCCGCTGCTGATGGGCCCGAACGGTCCGCTCCCGCCGCCGATGATGGGCATGCGACCCCCGCCGATGATGGTACCGACGATGGGCATGCCACCGATGGGTCTGGGGATGCGGCCACCGGTCATGAGTGCGGCACCGCCACAGCTCAACCCGAAAAGCTAAGGCTGCCGGGCAGGCAGGGTACGTCCGTCTGTTTTTCTTTCTTCATTCATTTCACCTCTACTCAGTATGGAACGATAGGGCGGTAATCACGGAATTACGGAAAAATATATACTACTACCTAGTGTATCGGATAAGCT]

[+] EMBL BM589559             [CCGCCCACGCGTCCGCCACCATCCGATCAAGCCACAACAATTGTTTGCAGCTTCGTTTGCGGGGAAACGAAATTTAGCACGATGCCGAAATATTACTGTGATTACTGTGACACCTACCTGACGCACGATTCGCCGAGCGTCCGGAAGACGCACTGCACCGGCCGGAAGCACAAGGACAATGTGAAATTTTACTACCAGAAATGGATGGAGGAGCAGGCGCAGCATTTGATCGACGCGACGACCGCAGCGTACAAGGCGGGCAAGATTGCCCCGAATCCGTTCACCGCGGGACCACCGAAGCCGAACATTTCCATCCCACCGCCGACGATGAACATGCCGCCTAGGCCGGGCATGATACCGGGCATGCCGGCTGGCGCACCGCCGCTGCTGATGGGCCCGAACGGGCCACTTCCGCCGCCGATGATGGGCATGCGACCCCCGCCGATGATGGTACCGACGATGGGCATGCCACCGATGGGTCTGGGGATGCGGCCACCGGTCATGAGTGCGGCACCGCCACAGCTCAACCCGAAAAGCTAAGGCTGCCGGGCAGGCAGGGTACGTCCGTCTGTTTTTCTTTCTTCATTCACTTCACCTCTACTCAGTATGGAACGATAGGGCGGTAATCACGGAATTACGGAAAAATATATACTACTACCTAGT              ]
[+] EMBL BX626956             [                                           TTTGCAGCTTCGTTTGCGGGGAAACGAAATTTAGCACGATGCCGAAATATTACTGTGATTACTGTGACACCTACCTGACGCACGATTCGCCCAGCGTCCGGAAGACGCACTGCACCGGCCGAAAACACAAGGACAATGTGAAATTTTACTACCAGAAATGGATGGAGGAGCAGGCGCAGCATCTGATCGACGCGACGACCGCAGCGTACAAGGCGGGCAAGATTGCCCCGAATCCGTTCACCGCGGGACCACCGAAGCCGAACATTTCCATCCCACCGCCGACGATGAACATGCCGCCTAGGCCGGGCATGATACCGGGCATGCCGGCTGGCGCACCGCCGCTGCTGATGGGCCCGAACGGTCCGCTCCCGCCGCCGATGATGGGCATGCGACCCCCGCCGATGATGGTACCGACGATGGGCATGCCACCGATGGGTCTGGGGATGCGGCCACCGGTCATGAGTGCGGCACCGCCACAGCTCAACCCGAAAAGCTAAGGCTGCCGGGCAGGCAGGGTACGTCCGTCTGTTTTTCTTTCTTCATTCATTTCACCTCTACTCAGTATGGAACGATAGGGCGGTAATCACGGAATTACGGAAAAATATATACTACTACCTAGTGTATCGGATAAGCT]
[+] EMBL BX613766             [                                                                                                                      TGACGCACGATTCGCCCAGCGTCCGGAAGACGCACTGCACCGGCCGAAAACACAAGGACAAGGTGAAATTTTACTACCAGAAATGGATGGAGGAGCAGGCGCAGCATCTGATCGACGCGACGACCGCAGCGTACAAGGCGGGCAAGAATGCCCCGAATCCGTTCACCGCGGGACCACCGAAGCCGAACATTTCCATCCCACCGCCGACGAAGAACATGCCGCCTAGGCCGGGCATGATACCGGGCATGCCGGCGGGCGCACCGCCGCTGCTGATGGGCCCGAACGGTCCGCTCCCGCCGCCGAAGAAGGGCATGCGACCCCCGCCGAAGATGGGACCGACGAAGGGCATGCCACCGAAGGGTCTGGGGAAGCGGCCACCGGTCATGAGTGCGGCACCGCCACAGCTCAACCCGAAAAGCTAAGGCTGCCGGGCAGGCA                                                                                                                         ]
[+] EMBL BX608313             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        CGATGGGTCTGGGGATGCGGCCACCGGTCATGAGTGCGGCACCGCCACAGCTCAACCCGAAAAGCTAAGGCTGCCGGGCAGGCAGGGTACGTCCGTCTGTTTTTCTTTCTTCATTCATTTCACCTCTACTCAGTATGGAACGATAGGGCGGTAATCACGGAATTACGGAAAAATATATACTACTACCTAGTGTATCGGATA    ]




>consensus_6044#0
CCGCCCACGCGTCCGCCACCATCCGATCAAGCCACAACAATTGTTTGCAGCTTCGTTTGC
GGGGAAACGAAATTTAGCACGATGCCGAAATATTACTGTGATTACTGTGACACCTACCTG
ACGCACGATTCGCCCAGCGTCCGGAAGACGCACTGCACCGGCCGAAAACACAAGGACAAT
GTGAAATTTTACTACCAGAAATGGATGGAGGAGCAGGCGCAGCATCTGATCGACGCGACG
ACCGCAGCGTACAAGGCGGGCAAGATTGCCCCGAATCCGTTCACCGCGGGACCACCGAAG
CCGAACATTTCCATCCCACCGCCGACGATGAACATGCCGCCTAGGCCGGGCATGATACCG
GGCATGCCGGCTGGCGCACCGCCGCTGCTGATGGGCCCGAACGGTCCGCTCCCGCCGCCG
ATGATGGGCATGCGACCCCCGCCGATGATGGTACCGACGATGGGCATGCCACCGATGGGT
CTGGGGATGCGGCCACCGGTCATGAGTGCGGCACCGCCACAGCTCAACCCGAAAAGCTAA
GGCTGCCGGGCAGGCAGGGTACGTCCGTCTGTTTTTCTTTCTTCATTCATTTCACCTCTA
CTCAGTATGGAACGATAGGGCGGTAATCACGGAATTACGGAAAAATATATACTACTACCT
AGTGTATCGGATAAGCT

consensusID : consensus_6044#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 360
fasta sequence

                              [TTACATATTGACAACATCAACAAATATTACTGTGATTACTGTGACACCTACCTGACGCACGATTCGCCCAGCGTCCGGAAGACGCACTGCACCGGCCGAAAACACAAGGACAATGTGAAATTTTACTACCAGAAATGGATGGAGGAGCAGGCGCACATCTGATCGACGCGACGACCGCAGCGTACAAGGCGGGCAAGATTGCCCCGAATCCGTTCACCGCGGGACCACCGAAGCCGAACATTTCCATCCCACCGCCGACGATGAACATGCCGCCTAGGCCGGGCATGATACCGGGCATGCCGGCTGGCGCACCGCGCTGCTGATGGGCCGAACGGTCCGCTCCCGCCGCCGATGATGGGC]

[+] EMBL CNS095DH             [TTACATATTGACAACATCAACAAATATTACTGTGATTACTGTGACACCTACCTGACGCACGATTCGCCCAGCGTCCGGAAGACGCACTGCACCGGCCGAAAACACAAGGACAATGTGAAATTTTACTACCAGAAATGGATGGAGGAGCAGGCGCACATCTGATCGACGCGACGACCGCAGCGTACAAGGCGGGCAAGATTGCCCCGAATCCGTTCACCGCGGGACCACCGAAGCCGAACATTTCCATCCCACCGCCGACGATGAACATGCCGCCTAGGCCGGGCATGATACCGGGCATGCCGGCTGGCGCACCGCGCTGCTGATGGGCCGAACGGTCCGCTCCCGCCGCCGATGATGGGC]




>consensus_6044#1
TTACATATTGACAACATCAACAAATATTACTGTGATTACTGTGACACCTACCTGACGCAC
GATTCGCCCAGCGTCCGGAAGACGCACTGCACCGGCCGAAAACACAAGGACAATGTGAAA
TTTTACTACCAGAAATGGATGGAGGAGCAGGCGCACATCTGATCGACGCGACGACCGCAG
CGTACAAGGCGGGCAAGATTGCCCCGAATCCGTTCACCGCGGGACCACCGAAGCCGAACA
TTTCCATCCCACCGCCGACGATGAACATGCCGCCTAGGCCGGGCATGATACCGGGCATGC
CGGCTGGCGCACCGCGCTGCTGATGGGCCGAACGGTCCGCTCCCGCCGCCGATGATGGGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6044#0      CCGCCCACGCGTCCGCCACCATCCGATCAAGCCACAACAATTGTTTGCAGCTTCGTTTGC 60
consensus_6044#1      ------------------------------------------------------------
                                                                                  

consensus_6044#0      GGGGAAACGAAATTTAGCACGATGCCGAAATATTACTGTGATTACTGTGACACCTACCTG 120
consensus_6044#1      ------TTACATATTGACAACATCAACAAATATTACTGTGATTACTGTGACACCTACCTG 54
                                *  **  **  **    *********************************

consensus_6044#0      ACGCACGATTCGCCCAGCGTCCGGAAGACGCACTGCACCGGCCGAAAACACAAGGACAAT 180
consensus_6044#1      ACGCACGATTCGCCCAGCGTCCGGAAGACGCACTGCACCGGCCGAAAACACAAGGACAAT 114
                      ************************************************************

consensus_6044#0      GTGAAATTTTACTACCAGAAATGGATGGAGGAGCAGGCGCAGCATCTGATCGACGCGACG 240
consensus_6044#1      GTGAAATTTTACTACCAGAAATGGATGGAGGAGCAGGCGCA-CATCTGATCGACGCGACG 173
                      ***************************************** ******************

consensus_6044#0      ACCGCAGCGTACAAGGCGGGCAAGATTGCCCCGAATCCGTTCACCGCGGGACCACCGAAG 300
consensus_6044#1      ACCGCAGCGTACAAGGCGGGCAAGATTGCCCCGAATCCGTTCACCGCGGGACCACCGAAG 233
                      ************************************************************

consensus_6044#0      CCGAACATTTCCATCCCACCGCCGACGATGAACATGCCGCCTAGGCCGGGCATGATACCG 360
consensus_6044#1      CCGAACATTTCCATCCCACCGCCGACGATGAACATGCCGCCTAGGCCGGGCATGATACCG 293
                      ************************************************************

consensus_6044#0      GGCATGCCGGCTGGCGCACCGCCGCTGCTGATGGGCCCGAACGGTCCGCTCCCGCCGCCG 420
consensus_6044#1      GGCATGCCGGCTGGCGCACCGC-GCTGCTGATGGGCC-GAACGGTCCGCTCCCGCCGCCG 351
                      ********************** ************** **********************

consensus_6044#0      ATGATGGGCATGCGACCCCCGCCGATGATGGTACCGACGATGGGCATGCCACCGATGGGT 480
consensus_6044#1      ATGATGGGC--------------------------------------------------- 360
                      *********                                                   

consensus_6044#0      CTGGGGATGCGGCCACCGGTCATGAGTGCGGCACCGCCACAGCTCAACCCGAAAAGCTAA 540
consensus_6044#1      ------------------------------------------------------------
                                                                                  

consensus_6044#0      GGCTGCCGGGCAGGCAGGGTACGTCCGTCTGTTTTTCTTTCTTCATTCATTTCACCTCTA 600
consensus_6044#1      ------------------------------------------------------------
                                                                                  

consensus_6044#0      CTCAGTATGGAACGATAGGGCGGTAATCACGGAATTACGGAAAAATATATACTACTACCT 660
consensus_6044#1      ------------------------------------------------------------
                                                                                  

consensus_6044#0      AGTGTATCGGATAAGCT 677
consensus_6044#1      -----------------