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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6045#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1229 fasta sequence
[GATTGCCCCAGGTTTTACTGCGATCGTATGGAAAAGCGCCTGAGTATCTTCCACCCACCGGTCAGACACCGTCGCCGACCACACCATCACAGCCACCCGTGGCCACTACGACGCCGACACCACCGACTAGCGCCACGCCCGATTCCTACCCAAGCTATGACGATGAGTACGACGACTCGATCGTGATCGATGCGCGAAGCGGTGCCGGAACTAACTACTCCGACTACTCTTCCACGGATTCTGATGACGGAGATGTTACGGTTACCGCGGCCACAACTTCAGCCACTACCCGCTCGTTTACCATCACGAAAAGTACCGCGGCACGGAGGAACAAACTCAGACAATACTGGGTGGATCGTCTTCGATTGAGGTGAGCTATGCCACACGCACCAACCGGCAAGCGACATCGTTGCGTTTGGATCCATCGACCGCTTCGGGTGCGTTCGACTTCGGGCCATCTTTCCGTGGATCCTTCCCAACGACTACTTTCCCACCGAGCACTACCAACGTACCGTCGACGGTCGGTTCCAGCTCCAGCTCAACGTCCAGCGGCAGTACGCCACAGCGCTCCGTGACGATCATCTCTTCTACCACGCCACGCACTGTTGTGTCGGCACGATTCAGCGAAACGGGTGACTCCACTTCTCAGAGCACATCTTCGGCACGGACGACGTATGAATCGCAAAGTGTGACATCGGGCATTACCTCGCAATCGGTCGTTGTTGGACAGGGACTGACGCAGGAACAGATCCATGCCAACCAGGAACAGTTCATCAAGCTGCTGTCCGAGCGGGATTCGATTGCGGAGGTTGGCTTTGGACCGAAAGGAGACACCTCCGGTACGCTGATCGATGCGTACGTGCGTAGCCGTGTCCTGTCCGCCACGCCTGCTCCCCGCGATGCAAAGGAAACGTCACGCACCGTCAACATTCGGCGCATTGTCGTGTCACGTCCAGTGGAAACCGAGCAGGAGGTCGAGGTGCGTGAGCAAGGGTACGCGACCACTATTGCACCTCCGCCGTATGAGCACAAGCGGGATGTAAGCGAAGTGACCCCGACCGAACGTGCCGATCGAGGACAGCAACCGCCGGTGTACGTTAATGCTAAGCCACCAGCATTCGCCGATGATCGAGATCAGTAGGTTAGCGAAATTGCGTTTGGTTCAGGAACCGCACGAGACAATACCATTTACGCACAGCAAGCAACAGACGGCATTTTGTAGGCAGCTT]
[+] EMBL AL693627 [GATTGCCCCAGGTTTTACTGCGATCGTATGGAAAAGCGCCTGAGTATCTTCCACCCACCGGTCAGACACCGTCGCCGACCACACCATCACAGCCACCCGTGGCCACTACGACGCCGACACCACCGACTAGCGCCACGCCCGATTCCTACCCAAGCTATGACGATGAGTACGACGACTCGATCGTGATCGATGCGCGAAGCGGTGCCGGAACTAACTACTCCGACTACTCTTCCACGGATTCTGATGACGGAGATGTTACGGTTACCGCGGCCACAACTTCAGCCACTACCCGCTCGTTTACCATCACGAAAAGTACCGCGGCACGGAGGAACAAACTCAGACAATACTGGGTGGATCGTCTTCGATTGAGGTGAGCTATGCCACACGCACCAACCGGCAAGCGACATCGTTGCGTTTGGATCCATCGACCGCTTCGGGTGCGTTCGACTTCGGGCCATCTTTCCGTGGATCCTTCCCAACGACTACTTTCCCACCGAGCACTACCAACGTACCGTCGACGGTCGGTTCCAGCTCCAGCTCAACGTCCAGCGGCAGTACGCCACAGCGCTCCGTGACGATCATCTCTTCTACCACGCCACGCACTGTTGTGTCGGCACGATTCAGCGAAACGGGTGACTCCACTTCTCAGAGCACATCTTCGGCACGGACGACGTATGAATCGCAAAGTGTGACATCGGGCATTACCTCGCAATCGGTCGTTGTTGGACAGGGACTGACGCAGGAACAGATCCATGCCAACCAGGAACAGTTCATCAAGCTGCTGTCCGAG ]
[+] EMBL BX620832 [ ACTCCACTTCTCAGAGCACATCTTCGGCACGGACGGCGTATGAATCGCAAAGTGTTACATCGGGCATTACCTCGCAATCGGTCGTTGTTGGGCAGGGACTGACGCAGGAACAGATCCATGCCAACCAGGAACAGTTCATCAAGCTGCTGTCCGAGCGGGATTCGATTGCGGAGGTTGGCTTTGGACCGAAAGGAGACACCTCCGGTACGCTGATCGATGCGTACGTGCGTAGCCGTGTCCTGTCCGCCACGCCTGCTCCCCGCGATGCAAAGGAAACGTCACGCACCGTCAACATTCGGCGCATTGTCGTGTCACGTCCAGTGGAAACCGAGCAGGAGGTCGAGGTGCGTGAGCAAGGGTACGCGACCACTATTGCACCTCCGCCGTATGAGCACAAGCGGGATGTAAGCGAAGTGACCCCGACCGAACGTGCCGATCGAGGACAGCAACCGCCGGTGTACGTTAATGCTAAGCCACCAGCATTCGCCGATGATCGAGATCAGTAGGTTAGCGAAATTGCGTTTGGTTCAGGAACCGCACGAGACAATACCATTTACGCACAGCAAGCAACAGACGGCATTTTGTAGGCAGCTT]
consensusID : consensus_6045#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 702 fasta sequence
[CATACGCCACCCACCTGGCGCCCCATCCATTCGTGTACCATCCGGCTAATGCTGGCCATCTGCTGCACCATGTAGCTTACGTAGATCAGCATTCGCCAGCTCTCTTGGCGACGCATCCCACCACAGCACATCCGGCCACCGTTTTCCATGTTCCATCGTCTACTCCGCTCTATCCCGTCACGCCCGCCACCACTAACGACGACTGCGATCGTAATGGAAAAGCGCCTGAGTATCTTCCACCCACCGGTCAGACACCGTCGCCGACCACACCATCACAGCCACCCGTGGCCACTACGACGCCGACACCACCGACTAGCGCCACGCCCGATTCCTACCCAAGCTATGACGATGAGTACGACGACTCGATCGTGATCGATGCGCGAAGCGGTGCCGGAACTAACTACTCCGACTACTCTTCCACGGATTCTGATGACGGAGATGTTACGGTTACCGCGGCCACAACTTCAGCCACTACCCCGCTCGTTTACCATCACGAAAAGTACCGCGGCACGGAGGAACAAACTCAGACAAGACTGGGTGGATCGTCTTCGATTGAGGTGAGCTATGCCACACGCACCACACCGGCAAGCGACATCGTTGCGTTTGATCCATCGACCGCTTCGGGTGCGTTCGACTTCGGGNCATCTTTCCGTGGATCCTTCCCAACGACTACTTTNCCACCGAGCACTACCAACGTACCGT]
[+] EMBL BX624841 [CATACGCCACCCACCTGGCGCCCCATCCATTCGTGTACCATCCGGCTAATGCTGGCCATCTGCTGCACCATGTAGCTTACGTAGATCAGCATTCGCCAGCTCTCTTGGCGACGCATCCCACCACAGCACATCCGGCCACCGTTTTCCATGTTCCATCGTCTACTCCGCTCTATCCCGTCACGCCCGCCACCACTAACGACGACTGCGATCGTAATGGAAAAGCGCCTGAGTATCTTCCACCCACCGGTCAGACACCGTCGCCGACCACACCATCACAGCCACCCGTGGCCACTACGACGCCGACACCACCGACTAGCGCCACGCCCGATTCCTACCCAAGCTATGACGATGAGTACGACGACTCGATCGTGATCGATGCGCGAAGCGGTGCCGGAACTAACTACTCCGACTACTCTTCCACGGATTCTGATGACGGAGATGTTACGGTTACCGCGGCCACAACTTCAGCCACTACCCCGCTCGTTTACCATCACGAAAAGTACCGCGGCACGGAGGAACAAACTCAGACAAGACTGGGTGGATCGTCTTCGATTGAGGTGAGCTATGCCACACGCACCACACCGGCAAGCGACATCGTTGCGTTTGATCCATCGACCGCTTCGGGTGCGTTCGACTTCGGGNCATCTTTCCGTGGATCCTTCCCAACGACTACTTTNCCACCGAGCACTACCAACGTACCGT]
consensusID : consensus_6045#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 579 fasta sequence
[GGCAGAATCGGCACGNNGGACATCGTCTACTCCGCTCTATCCCGTCACGCCCGCCACCACTAACGACGACTGCGATCGTAATGGAAAAGCGCCTGAGTATCTTCCACCCACCGGCCAGACACCGGTCGCCGACCACACCATCACAGCCACCCGTGGCCACTACGACGCCGACACCACCGACTAGCGCCACGCCCGATTCCTACCCAAGCTATGACGATGAGTACGACGACTCGATCGTGATCGATGCGCGAAGCGGTGCCGGAACTAACTACTCCGACTACTCTTCCACGGACTCTGATGACGGAGATGTTACGGTTACCGCGGGCACAACTTCAGGCACTACCCCGCTCGTCTACCATCACGAAAAGTACCGCGGCACGGAGGAACAAACTCAGACAAGACTGGGTGGATCGTCTTCGATTGAGGTGAGCTATGCCACACGCACCACGACCGGCAAGTGACATCGTTGCGGTTTGAGTCCATCGACCGCTTCAGGGTGCGGTTCGACGTTCGGGCCATCTTTTCCCGTGGATCCCTTCCCAAAGGACTAACGTTGCCCACGCGGAGGAACCAANCNAA]
[+] EMBL BX468088 [GGCAGAATCGGCACGNNGGACATCGTCTACTCCGCTCTATCCCGTCACGCCCGCCACCACTAACGACGACTGCGATCGTAATGGAAAAGCGCCTGAGTATCTTCCACCCACCGGCCAGACACCGGTCGCCGACCACACCATCACAGCCACCCGTGGCCACTACGACGCCGACACCACCGACTAGCGCCACGCCCGATTCCTACCCAAGCTATGACGATGAGTACGACGACTCGATCGTGATCGATGCGCGAAGCGGTGCCGGAACTAACTACTCCGACTACTCTTCCACGGACTCTGATGACGGAGATGTTACGGTTACCGCGGGCACAACTTCAGGCACTACCCCGCTCGTCTACCATCACGAAAAGTACCGCGGCACGGAGGAACAAACTCAGACAAGACTGGGTGGATCGTCTTCGATTGAGGTGAGCTATGCCACACGCACCACGACCGGCAAGTGACATCGTTGCGGTTTGAGTCCATCGACCGCTTCAGGGTGCGGTTCGACGTTCGGGCCATCTTTTCCCGTGGATCCCTTCCCAAAGGACTAACGTTGCCCACGCGGAGGAACCAANCNAA]
[+] EMBL AL931631 [ GAATC GCCCG AGGTNATCGTCTACTCCGCTCTATCCCGTCACGCCCGCCACCACTAACGACGACTGCGATCGTAATGGAAAAGCGCCTGAGTATCTTCCACCCACCGGCCAGACACC GTCGCCGACCACACCATCACAGCCACCCGTGGCCACTACGACGCCGACACCACCGACTAGCGCCACGCCCGATTCCTACCCAAGCTATGACGATGAGTACGACGACTCGATCGTGATCGATGCGCGAAGCGGTGCCGGAACTAACTACTCCGACTACTCTTCCACGGACTCTGATGACGGAGATGTTACGGTTACCGCGGCCACAACTTCAGCCACTACCCCGCTCGTCTACCATCACGAAAAGTACCGCGGCACGGAGGAACAAACTCAGACAAGACTGGGTGGATCGTCTTCGATTGAGGTGAGCTATGCCACACGCACCAC ACCGGCAAGTGACATC ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6045#1 CATACGCCACCCACCTGGCGCCCCATCCATTCGTGTACCATCCGGCTAATGCTGGCCATC 60
consensus_6045#2 ------------------------------------------------------------
consensus_6045#0 ------------------------------------------------------------
consensus_6045#1 TGCTGCACCATGTAGCTTACGTAGATCAGCATTCGCCAGCTCTCTTGGCGACGCATCCCA 120
consensus_6045#2 ------------------------------------------------------------
consensus_6045#0 ------------------------------------------------------------
consensus_6045#1 CCACAGCACATCCGGCCACCGTTTTCCATGTTCCATCGTCTACTCCGCTCTATCCCGTCA 180
consensus_6045#2 -------------GGCAGAATCGGCACGNNGGACATCGTCTACTCCGCTCTATCCCGTCA 47
consensus_6045#0 ------------------------------------------------------------
consensus_6045#1 CGCCCGCCACCACTAACGACGACTGCGATCGTAATGGAAAAGCGCCTGAGTATCTTCCAC 240
consensus_6045#2 CGCCCGCCACCACTAACGACGACTGCGATCGTAATGGAAAAGCGCCTGAGTATCTTCCAC 107
consensus_6045#0 -----GATTGCCCCAGGTTTTACTGCGATCGTA-TGGAAAAGCGCCTGAGTATCTTCCAC 54
* * * * ************ **************************
consensus_6045#1 CCACCGGTCAGACACCG-TCGCCGACCACACCATCACAGCCACCCGTGGCCACTACGACG 299
consensus_6045#2 CCACCGGCCAGACACCGGTCGCCGACCACACCATCACAGCCACCCGTGGCCACTACGACG 167
consensus_6045#0 CCACCGGTCAGACACCG-TCGCCGACCACACCATCACAGCCACCCGTGGCCACTACGACG 113
******* ********* ******************************************
consensus_6045#1 CCGACACCACCGACTAGCGCCACGCCCGATTCCTACCCAAGCTATGACGATGAGTACGAC 359
consensus_6045#2 CCGACACCACCGACTAGCGCCACGCCCGATTCCTACCCAAGCTATGACGATGAGTACGAC 227
consensus_6045#0 CCGACACCACCGACTAGCGCCACGCCCGATTCCTACCCAAGCTATGACGATGAGTACGAC 173
************************************************************
consensus_6045#1 GACTCGATCGTGATCGATGCGCGAAGCGGTGCCGGAACTAACTACTCCGACTACTCTTCC 419
consensus_6045#2 GACTCGATCGTGATCGATGCGCGAAGCGGTGCCGGAACTAACTACTCCGACTACTCTTCC 287
consensus_6045#0 GACTCGATCGTGATCGATGCGCGAAGCGGTGCCGGAACTAACTACTCCGACTACTCTTCC 233
************************************************************
consensus_6045#1 ACGGATTCTGATGACGGAGATGTTACGGTTACCGCGGCCACAACTTCAGCCACTACCCCG 479
consensus_6045#2 ACGGACTCTGATGACGGAGATGTTACGGTTACCGCGGGCACAACTTCAGGCACTACCCCG 347
consensus_6045#0 ACGGATTCTGATGACGGAGATGTTACGGTTACCGCGGCCACAACTTCAGCCACTACCC-G 292
***** ******************************* *********** ******** *
consensus_6045#1 CTCGTTTACCATCACGAAAAGTACCGCGGCACGGAGGAACAAACTCAGACAAGACTGGGT 539
consensus_6045#2 CTCGTCTACCATCACGAAAAGTACCGCGGCACGGAGGAACAAACTCAGACAAGACTGGGT 407
consensus_6045#0 CTCGTTTACCATCACGAAAAGTACCGCGGCACGGAGGAACAAACTCAGACAATACTGGGT 352
***** ********************************************** *******
consensus_6045#1 GGATCGTCTTCGATTGAGGTGAGCTATGCCACACGCACCAC-ACCGGCAAGCGACATCGT 598
consensus_6045#2 GGATCGTCTTCGATTGAGGTGAGCTATGCCACACGCACCACGACCGGCAAGTGACATCGT 467
consensus_6045#0 GGATCGTCTTCGATTGAGGTGAGCTATGCCACACGCACCA--ACCGGCAAGCGACATCGT 410
**************************************** ********* ********
consensus_6045#1 TGCG-TTTGA-TCCATCGACCGCTTC-GGGTGCG-TTCGAC-TTCGGGNCATCTTT--CC 651
consensus_6045#2 TGCGGTTTGAGTCCATCGACCGCTTCAGGGTGCGGTTCGACGTTCGGGCCATCTTTTCCC 527
consensus_6045#0 TGCG-TTTGGATCCATCGACCGCTTC-GGGTGCG-TTCGAC-TTCGGGCCATCTTT--CC 464
**** **** *************** ******* ****** ****** ******* **
consensus_6045#1 GTGGATCCTTCCC--AACGACTAC--TTTNCCACCGAGCACTACCAACGTACCGT----- 702
consensus_6045#2 GTGGATCCCTTCCCAAAGGACTAACGTTGCCCACGCGGAGGAACCAANCNAA-------- 579
consensus_6045#0 GTGGATCCTTCCC--AACGACTAC--TTTCCCACCGAGCACTACCAACGTACCGTCGACG 520
******** * ** ** ***** ** **** * ***** *
consensus_6045#1 ------------------------------------------------------------
consensus_6045#2 ------------------------------------------------------------
consensus_6045#0 GTCGGTTCCAGCTCCAGCTCAACGTCCAGCGGCAGTACGCCACAGCGCTCCGTGACGATC 580
consensus_6045#1 ------------------------------------------------------------
consensus_6045#2 ------------------------------------------------------------
consensus_6045#0 ATCTCTTCTACCACGCCACGCACTGTTGTGTCGGCACGATTCAGCGAAACGGGTGACTCC 640
consensus_6045#1 ------------------------------------------------------------
consensus_6045#2 ------------------------------------------------------------
consensus_6045#0 ACTTCTCAGAGCACATCTTCGGCACGGACGACGTATGAATCGCAAAGTGTGACATCGGGC 700
consensus_6045#1 ------------------------------------------------------------
consensus_6045#2 ------------------------------------------------------------
consensus_6045#0 ATTACCTCGCAATCGGTCGTTGTTGGACAGGGACTGACGCAGGAACAGATCCATGCCAAC 760
consensus_6045#1 ------------------------------------------------------------
consensus_6045#2 ------------------------------------------------------------
consensus_6045#0 CAGGAACAGTTCATCAAGCTGCTGTCCGAGCGGGATTCGATTGCGGAGGTTGGCTTTGGA 820
consensus_6045#1 ------------------------------------------------------------
consensus_6045#2 ------------------------------------------------------------
consensus_6045#0 CCGAAAGGAGACACCTCCGGTACGCTGATCGATGCGTACGTGCGTAGCCGTGTCCTGTCC 880
consensus_6045#1 ------------------------------------------------------------
consensus_6045#2 ------------------------------------------------------------
consensus_6045#0 GCCACGCCTGCTCCCCGCGATGCAAAGGAAACGTCACGCACCGTCAACATTCGGCGCATT 940
consensus_6045#1 ------------------------------------------------------------
consensus_6045#2 ------------------------------------------------------------
consensus_6045#0 GTCGTGTCACGTCCAGTGGAAACCGAGCAGGAGGTCGAGGTGCGTGAGCAAGGGTACGCG 1000
consensus_6045#1 ------------------------------------------------------------
consensus_6045#2 ------------------------------------------------------------
consensus_6045#0 ACCACTATTGCACCTCCGCCGTATGAGCACAAGCGGGATGTAAGCGAAGTGACCCCGACC 1060
consensus_6045#1 ------------------------------------------------------------
consensus_6045#2 ------------------------------------------------------------
consensus_6045#0 GAACGTGCCGATCGAGGACAGCAACCGCCGGTGTACGTTAATGCTAAGCCACCAGCATTC 1120
consensus_6045#1 ------------------------------------------------------------
consensus_6045#2 ------------------------------------------------------------
consensus_6045#0 GCCGATGATCGAGATCAGTAGGTTAGCGAAATTGCGTTTGGTTCAGGAACCGCACGAGAC 1180
consensus_6045#1 -------------------------------------------------
consensus_6045#2 -------------------------------------------------
consensus_6045#0 AATACCATTTACGCACAGCAAGCAACAGACGGCATTTTGTAGGCAGCTT 1229
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||