cluster # 6046

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Anopheles gambiae
cluster # 6046 cluster # 6046 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6046#0 length = 1345 sequences # 4

consensus_6046#1 length = 292 sequences # 1

consensusID : consensus_6046#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1345
fasta sequence

                              [AGCAGAATCGGCACGAGGCNCTTNTTCTGAGCGTGCTGAACCGTTGCTTGAAGGGTTTTAGTGAAGGCATTTTCCTTTTAATTTTTCATCCTTGTTTCTGTTGTTTGCAGGGTTTTCCAGGAGTTCTCATAGCTGTGGGACACTTGATTGACTCCTTCTTAAGTGAAATGAACCTAATGTAATGGGAATTGGGCTCTATAGCATCCTCGTTGTGCAAATCTAATAAGAATTTCCAATAAGATCCTGTCCAATAAGGATGCCGTAGAGTCCATTTTCCATCATTGGACAGTTCATCAGTTCACTTCTCGTAAGAAAGAGTCAAGGAAGTGAGAACTATGAGAATCTCATGAAGACCCTGTATGTTAGTTTTGGGGTGTTTTACTTTACCTAACCTTCCCAAACGCCCAACTACTACTACTTGCATTGTTTTATCAGTCTACTGAGGAGATTAGCAAAGTGAAATTAAATAGGGAAAAACCAAACAAAAACCATTATATCATCAAC---AACAAAAACCGAATGTTCCATAGCGAGCAAGGACAAGGGCAGCATATGTATGTGTCTGGCCGAAGGGATTGCAGTTGAAGGCGCAAGCAAATGTGTTCATTCGTCGTA---TAGGAAACGATC-GATCACT-TT--AAAAAAACA-GGAGAATTCTCGCATCA-GCCAATTTA-CTATTACTCTGATACTT-GAT-CTTGGAGAACTTGTAGCCTTTAATGACCAA-GTACCATCTTCAAA-GCACGTTCTTTTGCCTAGCCTGGCGTGTGTATAGATCTTTACCATCATC-AACCAAGCATAATTATGAAACTAGTTAATTCTTT-CCCATGCGTCCGATTCGATTAGCTTTGCAGGACGAGTGAAGGAAAGTAGGGTTTTAGGAAAAAAGCTAACGATGTAGCAAATGGGAAATGGGACAGATTAGGATTAGCGGATGCGATTACTATTGATTCGAACTTCAAAAGTTTAGCTACCGTGCATTTTAGATTTCTACAATACCTCACTAACTAACGTTCTTTCCATTCTTTCGTTGTGCTTCGTTGTCCGTCCCCCGCGTACTGTTTGGCAGTTGCAGAAGCATTTTTTTTTTGTTACAGAAAACTTGTTCAATAGGTTGTGTTTTGTTTAGTTTTATTTTAGATAGATTTTCCTTTGTTTTTGTCACTGCAATAATAGATTAATACTTTAGTGGAATGGATGGAGAGTAAACAATGAGATATACGAAGAAAATGATAAATGACAACTCTAGACACCGCAGCAAGTGTTGTTGAATGAGTAGATTACAACCAAACAAGTCCCATGTTTAAGAAAGAAAGGCTTTTGTTTGCCACCATCGTTTGCTTTCCAACTTCCT]

[+] EMBL BX469707             [AGCAGAATCGGCACGAGGCNCTTNTTCTGAGCGTGCTGAACCGTTGCTTGAAGGGTTTTAGTGAAGGCATTTTCCTTTTAATTTTTCATCCTTGTTTCTGTTGTTTGCAGGGTTTTCCAGGAGTTCTCATAGCTGTGGGACACTTGATTGACTCCTTCTTAAGTGAAATGAACCTAATGTAATGGGAATTGGGCTCTATAGCATCCTCGTTGTGCAAATCTAATAAGAATTTCCAATAAGATCCTGTCCAATAAGGATGCCGTAGAGTCCATTTTCCATCATTGGACAGTTCATCAGTTCACTTCTCGTAAGAAAGAGTCAAGGAAGTGAGAACTATGAGAATCTCATGAAGACCCTGTATGTTAGTTTTGGGGTGTTTTACTTTACCTAACCTTCCCAAACGCCCAACTACTACTACTTGCATTGTTTTATCAGTCTACTGAGGAGATTAGCAAAGTGAAATTAAATAGGGAAAAACCAAACAAAAACCATTATATCATCAAC   AACAAAAACCGAATGTTCCATAGCGAGCAAGGACAAGGGCAGCATATGTATGTGTCTGGCCGAAGGGATTGCAGTTGAAGGCGCAAGCAAATGTG TCATTCGTCGTA   TAGGCAACGATCGGATCACTGTTAGAAAAAAACAGGGAGAATTCTCGCATCAGGCCAATTTACCTATTACTCTGATACTTGGATCCTTGGAGAACTTGTAGCCTTTAATGACCAAGGTACCATCTTCAAAGGCCGGTTCTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL BM620040             [                                                                                                                                          ccgACTTGATTGACTCCTTCTTAAGTGAAATGAACCTAATGTAATGGGAATTGGGCTCTATAGCACCCTCGTTGTGCAAATCTAATAAGAATTTCCAATAAGATCCTGTCCAATAAGGATGCCGTAGAGTCCAATTTCCATCATTGGACAGTTCATCAGTTCACTTCTCGTAAGAAAGAGTCAAGGAAGTGAGAACTATGAGAATCTCATGAAGACCCTGTATGTTAGTTTTGGGGTGTTTTACTTTACCTAACCTTCCCAAACGCCCAACTATTACTACTTGCATTGTTTTATCAGTCTACAGAGGAGATTAGCAAAGTGAAATTAAATAGGGAAAAACCAAACAAAAACCATTATATCATCAAC   AACAAAAACCGAATGTTCCATAGCGAGCAAGGACAAGGGCAGCATATGTATGTGTCTGGCCGAAGGGATTGCAGTTGAAGGCGCAAGCAAATGTGTTCATTCGTCGTA   TAGCAAACGATC GATCACT TT  AAAAAAACA GGAGAATTCTCGCATCA GCCAATTTA CTATTACTCTGATACTT GAT CTTGGAGAACTTGTAGCCTTTAATGACCAA GTACCATATTCAAA GCACGTTCGTTTGCCTAGCCTGGCGTGTGTATAGATCTTTACCATCATC AACCAAGCATAATTATGAAACTAGTTAATTCTTT CCCATGCGTCCGAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL BM620295             [                                                                                                                                                                                                                                                                                                                                              ccgGAGAATCTCATGAAGACCCTGTATGTTAGTTTTGGGGTGTTTTACTTTACCTAACCTTCCCAAACGCCCAACTACTACTACTTGCATTGTTTTATCAGTCTACTGAGGAGATTAGCAAAGTGAAATTAAATAGGGAAAAACCAAACAAAAACCATTATATCAACAACAAAAAAAAAAACCGAATGTTCCATAGCGAGCAAGGACAAGGGCAGCATATGTATGTGTCTGGCCGAAGGGATTGCAGTTGAAGGCGCAAGCAAATGTGTTCATTCGTCGTACCGTTGTAAACGATC GATCACT TT  AAAAAAACA GGAGAATTCTCGCATCA GCCAATTTA CTATTACTCTGATACTT GAT CTTGGAGAACTTGTAGCCTTTAATGACCAA GTACCATCTTCAAA GCACGTTCTTTTGCCTAGCCTGGCGTGTGTATAGATCTTTACCATCATCAAACCAAGCATAATTATGAAACTAGTTAATTCTTTCCCCATGCGTCCGATTCGATTAGCTTTGCAGGACGAGTGAAGGAAAGTAGGGTTTTAGGAAAAAAGCTAACGATGTAGCAAATGGGAAATGGGACAGATTAGGATTAGCGGATGCGATTACTATTGATTCGAACTTCAAAAGTTTAGCTACCGTGCATTTTAGATTTCTACAATACCTCACTAACTAACGTTCTTTCCATTCTTTCGTTGTGCTTCGTTGTCCGTCCCCCGCGTACT                                                                                                                                                                                                                                                                                                      ]
[+] EMBL BX609897             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   TAATGACCAA GTACCATCTTCAAA GCACGTTCTTTTGCCTAGCCTGGCGTGTGTATAGATCTTTACCATCATCAAACCAA CATAATTATGAAATTAGTTAATTCTTTCCCCATGCGTCCGATTCGATTAGCTTTGCAGGACGAGTGAAGGAAAGTATGGTTTTAGGAAAAAAGCTAACGATGTAGCAAATGGGAAATGGGACAGATTAGGATTAGCG  TGCGATTACTATTGATTCGAACTTCAAAAGTTTAGCTACCGTGCATTTTAGATTTCTACAATACCTCACTAACTAACGTTCTTTCCATTCTTTCGTTGTGCTTCGTTGTCCGTCCCCCGCGTACTGTTTGGCAGTTGCAGAAGCATTTTTTTTTTGTTACAGAAAACTTGTTCAATAGGTTGTGTTTTGTTTAGTTTTATTTTAGATAGATTTTCCTTTGTTTTTGTCACTGCAATAATAGATTAATACTTTAGTGGAATGGATGGAGAGTAAACAATGAGATATACGAAGAAAATGATAAATGACAACTCTAGACACCGCAGCAAGTGTTGTTGAATGAGTAGATTACAACCAAACAAGTCCCATGTTTAAGAAAGAAAGGCTTTTGTTTGCCACCATCGTTTGCTTTCCAACTTCCT]




>consensus_6046#0
AGCAGAATCGGCACGAGGCNCTTNTTCTGAGCGTGCTGAACCGTTGCTTGAAGGGTTTTA
GTGAAGGCATTTTCCTTTTAATTTTTCATCCTTGTTTCTGTTGTTTGCAGGGTTTTCCAG
GAGTTCTCATAGCTGTGGGACACTTGATTGACTCCTTCTTAAGTGAAATGAACCTAATGT
AATGGGAATTGGGCTCTATAGCATCCTCGTTGTGCAAATCTAATAAGAATTTCCAATAAG
ATCCTGTCCAATAAGGATGCCGTAGAGTCCATTTTCCATCATTGGACAGTTCATCAGTTC
ACTTCTCGTAAGAAAGAGTCAAGGAAGTGAGAACTATGAGAATCTCATGAAGACCCTGTA
TGTTAGTTTTGGGGTGTTTTACTTTACCTAACCTTCCCAAACGCCCAACTACTACTACTT
GCATTGTTTTATCAGTCTACTGAGGAGATTAGCAAAGTGAAATTAAATAGGGAAAAACCA
AACAAAAACCATTATATCATCAACAACAAAAACCGAATGTTCCATAGCGAGCAAGGACAA
GGGCAGCATATGTATGTGTCTGGCCGAAGGGATTGCAGTTGAAGGCGCAAGCAAATGTGT
TCATTCGTCGTATAGGAAACGATCGATCACTTTAAAAAAACAGGAGAATTCTCGCATCAG
CCAATTTACTATTACTCTGATACTTGATCTTGGAGAACTTGTAGCCTTTAATGACCAAGT
ACCATCTTCAAAGCACGTTCTTTTGCCTAGCCTGGCGTGTGTATAGATCTTTACCATCAT
CAACCAAGCATAATTATGAAACTAGTTAATTCTTTCCCATGCGTCCGATTCGATTAGCTT
TGCAGGACGAGTGAAGGAAAGTAGGGTTTTAGGAAAAAAGCTAACGATGTAGCAAATGGG
AAATGGGACAGATTAGGATTAGCGGATGCGATTACTATTGATTCGAACTTCAAAAGTTTA
GCTACCGTGCATTTTAGATTTCTACAATACCTCACTAACTAACGTTCTTTCCATTCTTTC
GTTGTGCTTCGTTGTCCGTCCCCCGCGTACTGTTTGGCAGTTGCAGAAGCATTTTTTTTT
TGTTACAGAAAACTTGTTCAATAGGTTGTGTTTTGTTTAGTTTTATTTTAGATAGATTTT
CCTTTGTTTTTGTCACTGCAATAATAGATTAATACTTTAGTGGAATGGATGGAGAGTAAA
CAATGAGATATACGAAGAAAATGATAAATGACAACTCTAGACACCGCAGCAAGTGTTGTT
GAATGAGTAGATTACAACCAAACAAGTCCCATGTTTAAGAAAGAAAGGCTTTTGTTTGCC
ACCATCGTTTGCTTTCCAACTTCCT

consensusID : consensus_6046#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 292
fasta sequence

                              [CCGCCCACGCGTCCGAGCGCAGCCGTCGATTCGCGGTACGCTCGGCACGTTCTTTCAGCTGATGGTGACGGTTGGCATACTGTTCGTGTACGCGGTGGGCGCCGGCGTCGACGTGCAGGTGCTGAGCATTATCTGCGGCGTGATTCCGCTCGTGTTCGGTGCGATCTTTTTCTTCATGCCCGAAAGCCCGTACTATTTCGTGGAAAAGGGACGGTACAGTGAAGCGGCCAGCTCGCTGAAATGGCTCCGGGGCGCCCAGTACGACGAGAATGCGGAGATCGAAGACCTGAAG]

[+] EMBL BM650308             [CCGCCCACGCGTCCGAGCGCAGCCGTCGATTCGCGGTACGCTCGGCACGTTCTTTCAGCTGATGGTGACGGTTGGCATACTGTTCGTGTACGCGGTGGGCGCCGGCGTCGACGTGCAGGTGCTGAGCATTATCTGCGGCGTGATTCCGCTCGTGTTCGGTGCGATCTTTTTCTTCATGCCCGAAAGCCCGTACTATTTCGTGGAAAAGGGACGGTACAGTGAAGCGGCCAGCTCGCTGAAATGGCTCCGGGGCGCCCAGTACGACGAGAATGCGGAGATCGAAGACCTGAAG]




>consensus_6046#1
CCGCCCACGCGTCCGAGCGCAGCCGTCGATTCGCGGTACGCTCGGCACGTTCTTTCAGCT
GATGGTGACGGTTGGCATACTGTTCGTGTACGCGGTGGGCGCCGGCGTCGACGTGCAGGT
GCTGAGCATTATCTGCGGCGTGATTCCGCTCGTGTTCGGTGCGATCTTTTTCTTCATGCC
CGAAAGCCCGTACTATTTCGTGGAAAAGGGACGGTACAGTGAAGCGGCCAGCTCGCTGAA
ATGGCTCCGGGGCGCCCAGTACGACGAGAATGCGGAGATCGAAGACCTGAAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6046#0      AGCAGAATCGGCACGAGGCNCTTNTTCTGAGCGTGCTGAACCGTTGCTTGAAGGGTTTTA 60
consensus_6046#1      ------------------------------------------------------------
                                                                                  

consensus_6046#0      GTGAAGGCATTTTCCTTTTAATTTTTCATCCTTGTTTCTGTTGTTTGCAGGGTTTTCCAG 120
consensus_6046#1      ------------------------------------------------------------
                                                                                  

consensus_6046#0      GAGTTCTCATAGCTGTGGGACACTTGATTGACTCCTTCTTAAGTGAAATGAACCTAATGT 180
consensus_6046#1      ------------------------------------------------------------
                                                                                  

consensus_6046#0      AATGGGAATTGGGCTCTATAGCATCCTCGTTGTGCAAATCTAATAAGAATTTCCAATAAG 240
consensus_6046#1      ------------------------------------------------------------
                                                                                  

consensus_6046#0      ATCCTGTCCAATAAGGATGCCGTAGAGTCCATTTTCCATCATTGGACAGTTCATCAGTTC 300
consensus_6046#1      ------------------------------------------------------------
                                                                                  

consensus_6046#0      ACTTCTCGTAAGAAAGAGTCAAGGAAGTGAGAACTATGAGAATCTCATGAAGACCCTGTA 360
consensus_6046#1      ------------------------------------------------------------
                                                                                  

consensus_6046#0      TGTTAGTTTTGGGGTGTTTTACTTTACCTAACCTTCCCAAACGCCCAACTACTACTACTT 420
consensus_6046#1      ------------------------------------------------------------
                                                                                  

consensus_6046#0      GCATTGTTTTATCAGTCTACTGAGGAGATTAGCAAAGTGAAATTAAATAGGGAAAAACCA 480
consensus_6046#1      ------------------------------------------------------------
                                                                                  

consensus_6046#0      AACAAAAACCATTATATCATCAACAACAAAAACCGAATGTTCCATAGCGAGCAAGGACAA 540
consensus_6046#1      ------------------------------------------------------------
                                                                                  

consensus_6046#0      GGGCAGCATATGTATGTGTCTGGCCGAAGGGATTGCAGTTGAAGGCGCAAGCAAATGTGT 600
consensus_6046#1      ------------------------------------------------------------
                                                                                  

consensus_6046#0      TCATTCGTCGTATAGGAAACGATCGATCACTTTAAAAAAACAGGAGAATTCTCGCATCAG 660
consensus_6046#1      ---------------------------------------------------------CCG 3
                                                                               * *

consensus_6046#0      CCAATTTACTATTACTCTGATACTTGATCTTGGAGAACTTGTAGCCTTTAATGACCAAGT 720
consensus_6046#1      CCCACGCGTCCGAGCGCAGCCGTCGATTCGCGGTACGCTCGGCACGTTCTTTCAGCTGAT 63
                      ** *          * * *        **  **    ** *   * **   * * *   *

consensus_6046#0      ACCATCTTCAAAGCACGTTCTTTTGCCTAGCCTGGCGTGTGTATAGATCTTTACCATCAT 780
consensus_6046#1      GGTGACGGTTG-GCATACTGTT----CGTGTACGCGGTGGGCGCCGGCGTCGACGTGCAG 118
                           *      ***   * **    *  *   *  *** *    *   *  **   ** 

consensus_6046#0      CAACCAAGCATAATTATGAAACTAGTTAATTCTTTCCCATGCGTCCGATTCGATTAGCTT 840
consensus_6046#1      GTGCTGAGCATTATC-TGCGGC------GTGATTCCGCTCGTGTTCGGTGCGATC--TTT 169
                         *  ***** **  **   *       *  ** * *  * ** ** * ****    **

consensus_6046#0      TGCAGGACGAGTGAAGGAAAGTAGGGTTTTAGGAAAAAAGCTAACGATGTAGCAAATGGG 900
consensus_6046#1      TTCTTCATGCCCGAAAGCCCGTACTATTTCGTGGAAAAGG--GACGGTACAGTGAAGCGG 227
                      * *   * *   *** *   ***   ***   * **** *   *** *  **  **  **

consensus_6046#0      AAATGGGACAGATTAGGATTAGCGGATGCGATTACTATTG--ATTCGAACTTCAAAAGTT 958
consensus_6046#1      CCAGCTCGCTGAAATGGCTCCGGGGCGCCCAGTACGACGAGAATGCGGAGATCGAAGACC 287
                        *     * **   ** *  * **   * * *** *     ** ** *  ** **    

consensus_6046#0      TAGCTACCGTGCATTTTAGATTTCTACAATACCTCACTAACTAACGTTCTTTCCATTCTT 1018
consensus_6046#1      TGAAG------------------------------------------------------- 292
                      *                                                           

consensus_6046#0      TCGTTGTGCTTCGTTGTCCGTCCCCCGCGTACTGTTTGGCAGTTGCAGAAGCATTTTTTT 1078
consensus_6046#1      ------------------------------------------------------------
                                                                                  

consensus_6046#0      TTTGTTACAGAAAACTTGTTCAATAGGTTGTGTTTTGTTTAGTTTTATTTTAGATAGATT 1138
consensus_6046#1      ------------------------------------------------------------
                                                                                  

consensus_6046#0      TTCCTTTGTTTTTGTCACTGCAATAATAGATTAATACTTTAGTGGAATGGATGGAGAGTA 1198
consensus_6046#1      ------------------------------------------------------------
                                                                                  

consensus_6046#0      AACAATGAGATATACGAAGAAAATGATAAATGACAACTCTAGACACCGCAGCAAGTGTTG 1258
consensus_6046#1      ------------------------------------------------------------
                                                                                  

consensus_6046#0      TTGAATGAGTAGATTACAACCAAACAAGTCCCATGTTTAAGAAAGAAAGGCTTTTGTTTG 1318
consensus_6046#1      ------------------------------------------------------------
                                                                                  

consensus_6046#0      CCACCATCGTTTGCTTTCCAACTTCCT 1345
consensus_6046#1      ---------------------------