cluster # 605

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Anopheles gambiae
cluster # 605 cluster # 605 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_605#0 length = 587 sequences # 1

consensus_605#1 length = 316 sequences # 1

consensusID : consensus_605#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 587
fasta sequence

                              [AGAAGCAGTGCAATGTAGCCCGGAGCGCGAAGCTGNCAAGCTGCTACGCGCCACCTCCCACTCCAACTCGCGGGACAGCGTGCCTAAACCCGAGCCAGGATTACATCCAGGCCTCGTCGCAGCATACGATCCGCTACCCATCGACCTCCGTGCTGGCCTCGACACCAACGCCATCACTTCCATTGTAATGTATTTGCGTTCCAGAGCACACACACACCCACACACTCACACACAAACACACAAGTCGGTCTGTTTTTTTTTTGTTTCTGTTCAGTTTCGTTCTTACGTTTGTTTTGGATTAGTTCCTTTTGTTCTTTTCTTCTCTCTCTCCCTTCGTCTCTTCAAATCTTTCATTGAGGTTAACTGCTACTTTTAAAACATTCACTTCCCTTGTTTTGTTTGCGTTGTGTTTCTTCNTAACCGTTTTTATATGATCTTACATCGCATTAGCATCTGCAACTTATTTAGTTTGGTTGTACCGCCACTCGNACGGGCTCGCGAAGAAAGCACTTCNCGATACGATCAAAACNAAACTTCNGCGTCCATTTCCCTTGAACGCCCTGCATTTAAACACAAGGATAATGATT]

[+] EMBL BX620301             [AGAAGCAGTGCAATGTAGCCCGGAGCGCGAAGCTGNCAAGCTGCTACGCGCCACCTCCCACTCCAACTCGCGGGACAGCGTGCCTAAACCCGAGCCAGGATTACATCCAGGCCTCGTCGCAGCATACGATCCGCTACCCATCGACCTCCGTGCTGGCCTCGACACCAACGCCATCACTTCCATTGTAATGTATTTGCGTTCCAGAGCACACACACACCCACACACTCACACACAAACACACAAGTCGGTCTGTTTTTTTTTTGTTTCTGTTCAGTTTCGTTCTTACGTTTGTTTTGGATTAGTTCCTTTTGTTCTTTTCTTCTCTCTCTCCCTTCGTCTCTTCAAATCTTTCATTGAGGTTAACTGCTACTTTTAAAACATTCACTTCCCTTGTTTTGTTTGCGTTGTGTTTCTTCNTAACCGTTTTTATATGATCTTACATCGCATTAGCATCTGCAACTTATTTAGTTTGGTTGTACCGCCACTCGNACGGGCTCGCGAAGAAAGCACTTCNCGATACGATCAAAACNAAACTTCNGCGTCCATTTCCCTTGAACGCCCTGCATTTAAACACAAGGATAATGATT]




>consensus_605#0
AGAAGCAGTGCAATGTAGCCCGGAGCGCGAAGCTGNCAAGCTGCTACGCGCCACCTCCCA
CTCCAACTCGCGGGACAGCGTGCCTAAACCCGAGCCAGGATTACATCCAGGCCTCGTCGC
AGCATACGATCCGCTACCCATCGACCTCCGTGCTGGCCTCGACACCAACGCCATCACTTC
CATTGTAATGTATTTGCGTTCCAGAGCACACACACACCCACACACTCACACACAAACACA
CAAGTCGGTCTGTTTTTTTTTTGTTTCTGTTCAGTTTCGTTCTTACGTTTGTTTTGGATT
AGTTCCTTTTGTTCTTTTCTTCTCTCTCTCCCTTCGTCTCTTCAAATCTTTCATTGAGGT
TAACTGCTACTTTTAAAACATTCACTTCCCTTGTTTTGTTTGCGTTGTGTTTCTTCNTAA
CCGTTTTTATATGATCTTACATCGCATTAGCATCTGCAACTTATTTAGTTTGGTTGTACC
GCCACTCGNACGGGCTCGCGAAGAAAGCACTTCNCGATACGATCAAAACNAAACTTCNGC
GTCCATTTCCCTTGAACGCCCTGCATTTAAACACAAGGATAATGATT

consensusID : consensus_605#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 316
fasta sequence

                              [CCGCGCACTCACACACAAACACACAAGTCGGCCTGTTTTTTTTTGTGTCTGTTCAGGTTCGTGCTTACGTTTGTTTTGGATTAGGTCCTGTAGTACTTTTCTTCTCTCTCTCCCTTTGTCTCTTCAAATCTTTCATTGAGGCTAACTGCTACTTTTAAAGCATTCACTTCCCTTGTTTTGTTTGCGGTGTGGTTCGTCTAAACCGTTTTTATATGATCTTACATCGCATTAGCATCTGCAACTTATTTAGTTTGGTTGTACCGCCACTCGTACGGGCTCGCAAAGAAAGCACTTCACGATACGATCAAAACAAACT]

[+] EMBL BM620826             [CCGCGCACTCACACACAAACACACAAGTCGGCCTGTTTTTTTTTGTGTCTGTTCAGGTTCGTGCTTACGTTTGTTTTGGATTAGGTCCTGTAGTACTTTTCTTCTCTCTCTCCCTTTGTCTCTTCAAATCTTTCATTGAGGCTAACTGCTACTTTTAAAGCATTCACTTCCCTTGTTTTGTTTGCGGTGTGGTTCGTCTAAACCGTTTTTATATGATCTTACATCGCATTAGCATCTGCAACTTATTTAGTTTGGTTGTACCGCCACTCGTACGGGCTCGCAAAGAAAGCACTTCACGATACGATCAAAACAAACT]




>consensus_605#1
CCGCGCACTCACACACAAACACACAAGTCGGCCTGTTTTTTTTTGTGTCTGTTCAGGTTC
GTGCTTACGTTTGTTTTGGATTAGGTCCTGTAGTACTTTTCTTCTCTCTCTCCCTTTGTC
TCTTCAAATCTTTCATTGAGGCTAACTGCTACTTTTAAAGCATTCACTTCCCTTGTTTTG
TTTGCGGTGTGGTTCGTCTAAACCGTTTTTATATGATCTTACATCGCATTAGCATCTGCA
ACTTATTTAGTTTGGTTGTACCGCCACTCGTACGGGCTCGCAAAGAAAGCACTTCACGAT
ACGATCAAAACAAACT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_605#0      AGAAGCAGTGCAATGTAGCCCGGAGCGCGAAGCTGNCAAGCTGCTACGCGCCACCTCCCA 60
consensus_605#1      ------------------------------------------------------------
                                                                                 

consensus_605#0      CTCCAACTCGCGGGACAGCGTGCCTAAACCCGAGCCAGGATTACATCCAGGCCTCGTCGC 120
consensus_605#1      ------------------------------------------------------------
                                                                                 

consensus_605#0      AGCATACGATCCGCTACCCATCGACCTCCGTGCTGGCCTCGACACCAACGCCATCACTTC 180
consensus_605#1      ------------------------------------------------------------
                                                                                 

consensus_605#0      CATTGTAATGTATTTGCGTTCCAGAGCACACACACACCCACACACTCACACACAAACACA 240
consensus_605#1      -------------------------------------CCGCGCACTCACACACAAACACA 23
                                                          ** * ******************

consensus_605#0      CAAGTCGGTCTGTTTTTTTTTTGTTTCTGTTCAGTTTCGTTCTTACGTTTGTTTTGGATT 300
consensus_605#1      CAAGTCGGCCTGTTTTTTTTT-GTGTCTGTTCAGGTTCGTGCTTACGTTTGTTTTGGATT 82
                     ******** ************ ** ********* ***** *******************

consensus_605#0      AGTTCCTTTTGTTCTTTTCTTCTCTCTCTCCCTTCGTCTCTTCAAATCTTTCATTGAGGT 360
consensus_605#1      AGGTCCTGTAGTACTTTTCTTCTCTCTCTCCCTTTGTCTCTTCAAATCTTTCATTGAGGC 142
                     ** **** * ** ********************* ************************ 

consensus_605#0      TAACTGCTACTTTTAAAACATTCACTTCCCTTGTTTTGTTTGCGTTGTGTTTCTTCNTAA 420
consensus_605#1      TAACTGCTACTTTTAAAGCATTCACTTCCCTTGTTTTGTTTGCGGTGTGGTTCGTCTAAA 202
                     ***************** ************************** **** *** **  **

consensus_605#0      CCGTTTTTATATGATCTTACATCGCATTAGCATCTGCAACTTATTTAGTTTGGTTGTACC 480
consensus_605#1      CCGTTTTTATATGATCTTACATCGCATTAGCATCTGCAACTTATTTAGTTTGGTTGTACC 262
                     ************************************************************

consensus_605#0      GCCACTCGNACGGGCTCGCGAAGAAAGCACTTCNCGATACGATCAAAACNAAACTTCNGC 540
consensus_605#1      GCCACTCGTACGGGCTCGCAAAGAAAGCACTTCACGATACGATCAAAACAAACT------ 316
                     ******** ********** ************* *************** **        

consensus_605#0      GTCCATTTCCCTTGAACGCCCTGCATTTAAACACAAGGATAATGATT 587
consensus_605#1      -----------------------------------------------