cluster # 6070

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 6070 cluster # 6070 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6070#0 length = 673 sequences # 1

consensus_6070#1 length = 565 sequences # 4

consensusID : consensus_6070#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 673
fasta sequence

                              [CCGCCCACGCGTCCGAAAGTACGTAATCTTTGGCTGATTGTGAAATCGACTAAATCATGACATCCTCGATCATTCTGGCTGGGCTGGGCCTAGCCGTGGTTGGGTATGGAGGAAGAGCGCTAATGCGTCAAATGCCCAATGCCGCGACCAAAATGCAGGAAGCCCTGAAAAATATGCCCAAGTTTGATGCTGAAATGATGGCCAGCTCGAAGTACTACCGTGGGGGATTCGATGCTAAAATGAACAAACGCGAAGCTTCCCTCATCCTGGGCGTAAGCCCATCCGCATCCAAGGCAAAGGTCAAGGATGCACACAAAAAGATTATGCTGTTGAATCATCCCGACCGTGGAGGTTCCCCGTACTTGGCCGCCAAGATCAACGAGGCAAAGGACTTTATGGACAATACTAAGTAAAGCATTAGCTATGCGCAATAACGAGAATTGTACAAAGTATCAAATTATTCGATAAAATAACGAGAATAGTTGGTTAATAGGTGAAAAACTTCTGAGGGGTTTATTAGATTTTTGAGGAGATGGTATCACAATAGACAATCCTCTCGAATTAGCTCTATCATTATGATGACTATCAGGCTGAAGCGGTAATTAATTCGTACAGATAAATTGAAATTCATTCCAAGGATTTTTGGCAATGCTTGTGTAAAAAAAAAATTACC]

[+] EMBL BM616756             [CCGCCCACGCGTCCGAAAGTACGTAATCTTTGGCTGATTGTGAAATCGACTAAATCATGACATCCTCGATCATTCTGGCTGGGCTGGGCCTAGCCGTGGTTGGGTATGGAGGAAGAGCGCTAATGCGTCAAATGCCCAATGCCGCGACCAAAATGCAGGAAGCCCTGAAAAATATGCCCAAGTTTGATGCTGAAATGATGGCCAGCTCGAAGTACTACCGTGGGGGATTCGATGCTAAAATGAACAAACGCGAAGCTTCCCTCATCCTGGGCGTAAGCCCATCCGCATCCAAGGCAAAGGTCAAGGATGCACACAAAAAGATTATGCTGTTGAATCATCCCGACCGTGGAGGTTCCCCGTACTTGGCCGCCAAGATCAACGAGGCAAAGGACTTTATGGACAATACTAAGTAAAGCATTAGCTATGCGCAATAACGAGAATTGTACAAAGTATCAAATTATTCGATAAAATAACGAGAATAGTTGGTTAATAGGTGAAAAACTTCTGAGGGGTTTATTAGATTTTTGAGGAGATGGTATCACAATAGACAATCCTCTCGAATTAGCTCTATCATTATGATGACTATCAGGCTGAAGCGGTAATTAATTCGTACAGATAAATTGAAATTCATTCCAAGGATTTTTGGCAATGCTTGTGTAAAAAAAAAATTACC]




>consensus_6070#0
CCGCCCACGCGTCCGAAAGTACGTAATCTTTGGCTGATTGTGAAATCGACTAAATCATGA
CATCCTCGATCATTCTGGCTGGGCTGGGCCTAGCCGTGGTTGGGTATGGAGGAAGAGCGC
TAATGCGTCAAATGCCCAATGCCGCGACCAAAATGCAGGAAGCCCTGAAAAATATGCCCA
AGTTTGATGCTGAAATGATGGCCAGCTCGAAGTACTACCGTGGGGGATTCGATGCTAAAA
TGAACAAACGCGAAGCTTCCCTCATCCTGGGCGTAAGCCCATCCGCATCCAAGGCAAAGG
TCAAGGATGCACACAAAAAGATTATGCTGTTGAATCATCCCGACCGTGGAGGTTCCCCGT
ACTTGGCCGCCAAGATCAACGAGGCAAAGGACTTTATGGACAATACTAAGTAAAGCATTA
GCTATGCGCAATAACGAGAATTGTACAAAGTATCAAATTATTCGATAAAATAACGAGAAT
AGTTGGTTAATAGGTGAAAAACTTCTGAGGGGTTTATTAGATTTTTGAGGAGATGGTATC
ACAATAGACAATCCTCTCGAATTAGCTCTATCATTATGATGACTATCAGGCTGAAGCGGT
AATTAATTCGTACAGATAAATTGAAATTCATTCCAAGGATTTTTGGCAATGCTTGTGTAA
AAAAAAAATTACC

consensusID : consensus_6070#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 565
fasta sequence

                              [CCGCGGACGCGTGGGTGCGGCATGACAGCGGGTGCTGTCATTTCCGTCTTGTCGCACGATATTATTGTTTACAATCTTTTCCAGAAAGTACGTAATCTTTGGCTGATTGTGAAATCGACTAAATCATGACATCCTCGATCATTCTGGCTGGGCTGGGCCTAGCCGTGGTTGGGTATGGAGGAAGAGCGCTAATGCGTCAAATGCCCAATGCCGCGACCAAAATGCAGGAAGCCCTGAAAAATATGCCCAAGTTTGATGCTGAAATGATGGCCAGCTCGAAGTACTACCGTGGGGGATTCGATGCTAAAATGAACAAACGCGAAGCTTCCCTCATTCTGGGCGTAAGCCCATCCGCATCCAAGGCAAAGGTCAAGGATGCACACAAAAAGATTATGCTGTTGAATCATCCCGACCGTGGAGGCTCCCCGTACTTGGCCGCCAAGATCAACGAGGCAAAGGACTTTATGGACAATACTAAGTAAAGCATTAGCTATGCGCAATAACGAGAATTGTACAAAGTATCAAATTATTCGATAAAATAACGAGAATAGTTGGTTAATAGGTG]

[+] EMBL BM606563             [CCGCGGACGCGTGGGTGCGGCATGACAGCGGGTGCTGTCATTTCCGTCTTGTCGCACGATATTATTGTTTACAATCTTTTCCAGAAAGTACGTAATCTTTGGCTGATTGTGAAATCGACTAAATCATGACATCCTCGATCATTCTGGCTGGGCTGGGCCTAGCCGTGGTTGGGTATGGAGGAAGAGCGCTAATGCGTCAAATGCCCAATGCCGCGACCAAAATGCAGGAAGCCCTGAAAAATATGCCCAAGTTTGATGCTGAAATGATGGCCAGCTCGAAGTACTACCGTGGGGGATTCGATGCTAAAATGAACAAACGCGAAGCTTCCCTCATTCTGGGCGTAAGCCCATCCGCATCCAAGGCAAAGGTCAAGGATGCACACAAAAAGATTATGCTGTTGAATCATCCCGACCGTGGAGGCTCCCCGTACTTGGCCGCCAAGATCAACGAGGCAAAGGACTTTATGGACAATACTAAGTAAAGCATTAGCTATGCGCAATAACGAGAATTGTACAAAGTATCAAATTATTCGATAAAATAACGAGAATAGTTGGTTAATAGGTG]
[+] EMBL BM620380             [                                                                                CCGGAAAGTACGTAATCTTTGGCTGATTGTGAAATCGACTAAATCATGACATCCTCGATCATTCTGGCTGGGCTGGGCCTAGCCGTGGTTGGGTATGGAGGAAGAGCGCTAATGCGTCAAATGCCCAATGCCGCGACCAAAATGCAGGAAGCCCTGAAAAATATGCCCAAGTTTGATGCTGAAATGATGGCCAGCTCGAAGTACTACCGTGGGGGATTCGATGCTAAAATGAACAAACGCGAAGCTTCCCTCATTCTGGGCGTAAGCCCATCCGCATCCAAGGCAAAGGTCAAGGATGCACACAAAAAGATTATGCTGTTGAATCATCCCGACCGTGGAGGCTCCCCGTACTTGGCCGCCAAGATCAACGAGGCAAAGGACTTTATGGACAATACTAAGTAAAGCATTAGCTATGCGCAATAACGAGAATTGTACAAAGTATCAAATTATTC                                 ]
[+] EMBL BM647309             [                                                                                        ccgGTAATCTTTGGCTGATTGTGAAATCGACTAAATCATGACATCCTCGATCATTCTGGCTGGGCTGGGCCTAGCCGTGGTTGGGTATGGAGGAAGAGCGCTAATGCGTCAAATGCCCAATGCCGCGACCAAAATGCAGGAAGCCCTGAAAAATATGCCCAAGTTTGATGCTGAAATGATGGCCAGCTCGAAGTACTACCGTGGGGGATTCGATGCTAAAATGAACAAACGCGAAGCTTCCCTCATCCTGGGCGTAAGCCCATCCGCATCCAAGGCAAAGGTCAAGGATGCACACAAAAAGATTATGCTGTTGAATCATCCCGACCGTGGAGGCTCCCCGTACTTGGCCGCCAAGATCAACGAGGCAAAGGACTTTATGGACAATACTAAGTAAAGCATTAGCTATGCGCAATAACGAGAATTGTACAAAGTATCAAATTATTCGATAAAATAACGAGAGTAGTTGGTTAATAGGTG]
[+] EMBL BM610273             [                                                                                             ccgCTTTGGCTGATTGTGAAATCGACTAAATCATGACATCCTCGATCATTCTGGCTGGGCTGGGCCTAGCCGTGGTTGGGTATGGAGGAAGAGCGCTAATGCGTCAAATGCCCAATGCCGCGACCAAAATGCAGGAAGCCCTGAAAAATATGCCCAAGTTTGATGCTGAAATGATGGCCAGCTCGAAGTACTACCGTGGGGGATTCGATGCTAAAATGAACAAACGCGAAGCTTCCCTCATTCTGGGCGTAAGCCCATCCGCATCCAAGGCAAAGGTCAAGGATGCACACAAAAAGATTATGCTGTTGAATCATCCCGACCGTGGAGGCTCCCCGTACTTGGCCGCCAAGATCAACGAGGCAAAGGACTTTATGGACAATACTAAGTAAAGCATTAGCTATGCGCAATAACGAGAATTGTACAAAGTATCAAATTATTCGATAAAATAACGAGAATAGTTGGTTAATAGGTG]




>consensus_6070#1
CCGCGGACGCGTGGGTGCGGCATGACAGCGGGTGCTGTCATTTCCGTCTTGTCGCACGAT
ATTATTGTTTACAATCTTTTCCAGAAAGTACGTAATCTTTGGCTGATTGTGAAATCGACT
AAATCATGACATCCTCGATCATTCTGGCTGGGCTGGGCCTAGCCGTGGTTGGGTATGGAG
GAAGAGCGCTAATGCGTCAAATGCCCAATGCCGCGACCAAAATGCAGGAAGCCCTGAAAA
ATATGCCCAAGTTTGATGCTGAAATGATGGCCAGCTCGAAGTACTACCGTGGGGGATTCG
ATGCTAAAATGAACAAACGCGAAGCTTCCCTCATTCTGGGCGTAAGCCCATCCGCATCCA
AGGCAAAGGTCAAGGATGCACACAAAAAGATTATGCTGTTGAATCATCCCGACCGTGGAG
GCTCCCCGTACTTGGCCGCCAAGATCAACGAGGCAAAGGACTTTATGGACAATACTAAGT
AAAGCATTAGCTATGCGCAATAACGAGAATTGTACAAAGTATCAAATTATTCGATAAAAT
AACGAGAATAGTTGGTTAATAGGTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6070#0      ------------------------------------------------------------
consensus_6070#1      CCGCGGACGCGTGGGTGCGGCATGACAGCGGGTGCTGTCATTTCCGTCTTGTCGCACGAT 60
                                                                                  

consensus_6070#0      --------CCGCCCACGCGTCC-GAAAGTACGTAATCTTTGGCTGATTGTGAAATCGACT 51
consensus_6070#1      ATTATTGTTTACAATCTTTTCCAGAAAGTACGTAATCTTTGGCTGATTGTGAAATCGACT 120
                                 *   *   *** *************************************

consensus_6070#0      AAATCATGACATCCTCGATCATTCTGGCTGGGCTGGGCCTAGCCGTGGTTGGGTATGGAG 111
consensus_6070#1      AAATCATGACATCCTCGATCATTCTGGCTGGGCTGGGCCTAGCCGTGGTTGGGTATGGAG 180
                      ************************************************************

consensus_6070#0      GAAGAGCGCTAATGCGTCAAATGCCCAATGCCGCGACCAAAATGCAGGAAGCCCTGAAAA 171
consensus_6070#1      GAAGAGCGCTAATGCGTCAAATGCCCAATGCCGCGACCAAAATGCAGGAAGCCCTGAAAA 240
                      ************************************************************

consensus_6070#0      ATATGCCCAAGTTTGATGCTGAAATGATGGCCAGCTCGAAGTACTACCGTGGGGGATTCG 231
consensus_6070#1      ATATGCCCAAGTTTGATGCTGAAATGATGGCCAGCTCGAAGTACTACCGTGGGGGATTCG 300
                      ************************************************************

consensus_6070#0      ATGCTAAAATGAACAAACGCGAAGCTTCCCTCATCCTGGGCGTAAGCCCATCCGCATCCA 291
consensus_6070#1      ATGCTAAAATGAACAAACGCGAAGCTTCCCTCATTCTGGGCGTAAGCCCATCCGCATCCA 360
                      ********************************** *************************

consensus_6070#0      AGGCAAAGGTCAAGGATGCACACAAAAAGATTATGCTGTTGAATCATCCCGACCGTGGAG 351
consensus_6070#1      AGGCAAAGGTCAAGGATGCACACAAAAAGATTATGCTGTTGAATCATCCCGACCGTGGAG 420
                      ************************************************************

consensus_6070#0      GTTCCCCGTACTTGGCCGCCAAGATCAACGAGGCAAAGGACTTTATGGACAATACTAAGT 411
consensus_6070#1      GCTCCCCGTACTTGGCCGCCAAGATCAACGAGGCAAAGGACTTTATGGACAATACTAAGT 480
                      * **********************************************************

consensus_6070#0      AAAGCATTAGCTATGCGCAATAACGAGAATTGTACAAAGTATCAAATTATTCGATAAAAT 471
consensus_6070#1      AAAGCATTAGCTATGCGCAATAACGAGAATTGTACAAAGTATCAAATTATTCGATAAAAT 540
                      ************************************************************

consensus_6070#0      AACGAGAATAGTTGGTTAATAGGTGAAAAACTTCTGAGGGGTTTATTAGATTTTTGAGGA 531
consensus_6070#1      AACGAGAATAGTTGGTTAATAGGTG----------------------------------- 565
                      *************************                                   

consensus_6070#0      GATGGTATCACAATAGACAATCCTCTCGAATTAGCTCTATCATTATGATGACTATCAGGC 591
consensus_6070#1      ------------------------------------------------------------
                                                                                  

consensus_6070#0      TGAAGCGGTAATTAATTCGTACAGATAAATTGAAATTCATTCCAAGGATTTTTGGCAATG 651
consensus_6070#1      ------------------------------------------------------------
                                                                                  

consensus_6070#0      CTTGTGTAAAAAAAAAATTACC 673
consensus_6070#1      ----------------------