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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6094#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 808 fasta sequence
[CCGGTAATTTTTTCGTGTACATTCTACGCTTTTATTTAGACGCTTGACGCTTCGGTGGCCGTG-CGCACATATTTCTTCCCCGCAGCCAAACTAGCGCGCCCAGACACAATGAAGAAAAAGGTGCTCCTGATGGGCAAGAGCGGCTCTGGCAAGACCAGCATGCGTTCGATCATCTTCGCCAACTACATCGCCCGTGACACACGAAGGCTGGGGGCCACAATCGATGTCGAACACTCACACGTCCGCTTTTTGGGCAATCTCGTGCTCAACCTGTGGGACTGCGGTGGGCAGGAATCGTTCATGGAGCAGTACTTCGCCTCACAGAAGGACAACATCTTCCGGAACGTGGAGGTGCTGATCTACGTGTTCGATGTGGAGAGCCGCGAGCTGGACAAGGACATGCACTACTACCAGTCGTGCCTGGAGGCGTTGCTGGTCAACTCGCCGAACGCGAAGATCTTCTGCCTCGTGCACAAGATGGACCTGGTGGCGGAGGAGCAGCGCGACATAATATTCAAGGAGCGCGAGGAGGACCTGAAGCGCTGTTCGCGCCCGCTCGAGTGTACGGCATTCCGGACGAGCATCTGGGACGAGACGCTGTACCGGGCGTGGAGCAGCATCGTCTACCAGCTGATCCCGAACGTGAAGGCGCTGGAGCACTCGCTCAACTACTTCGCGAACGTGGTGGACGCGGACGAGGTGCTGCTGTTCGAGCGGGCCACCTTTCTGGTGATTTCGCACTGCCAGCGCAAACAGCACCGGGACAGCCACCGGTTTCGAGAAGGTGTCGAACATCATCAAACAGTTC]
[+] EMBL BM609096 [CCGGTAATTTTTTCGTGTACATTCTACGCTTTTATTTAGACGCTTGACGCTTCGGTGGCCGTG CGCACATATTTCTTCCCCGCAGCCAAACTAGCGCGCCCAGACACAATGAAGAAAAAGGTGCTCCTGATGGGCAAGAGCGGCTCTGGCAAGACCAGCATGCGTTCGATCATCTTCGCCAACTACATCGCCCGTGACACACGAAGGCTGGGGGCCACAATCGATGTCGAACACTCACACGTCCGCTTTTTGGGCAATCTCGTGCTCAACCTGTGGGACTGCGGTGGGCAGGAATCGTTCATGGAGCAGTACTTCGCCTCACAGAAGGACAACATCTTCCGGAACGTGGAGGTGCTGATCTACGTGTTCGATGTGGAGAGCCGCGAGCTGGACAAGGACATGCACTACTACCAGTCGTGCCTGGAGGCGTTGCTGGTCAACTCGCCGAACGCGAAGATCTTCTGC ]
[+] EMBL BM609086 [CCGGTAATTTTTTCGTGTACATTCTACGCTTTTATTTAGACGCTTGACGCTTCGGTGGCCGTGCCGCACATATTTCTTCCCCGCAGCCAAACTAGCGCGCCCAGACACAATGAAGAAAAAGGTGCTCCTGATGGGCAAGAGCGGCTCTGGCAAGACCAGCATGCGTTCGATCATCTTCGCCAACTA ]
[+] EMBL BX626976 [ GCCGTG CGCACATATTTCTTCCCCGCAGCCAAACTAGCGCGCCCAGACACAATGAAGAAAAAGGTGCTCCTGATGGGCAAGAGCGGCTCTGGCAAGACCAGCATGCGTTCGATCATCTTCGCCAACTACATCGCCCGTGACACACGAAGGCTGGGGGCCACAATCGATGTCGAACACTCACACGTCCGCTTTTTGGGCAATCTCGTGCTCAACCTGTGGGACTGCGGTGGGCAGGAATCGTTCATGGAGCAGTACTTCGCCTCACAGAAGGACAACATCTTCCGGAACGTGGAGGTGCTGATCTACGTGTTCGATGTGGAGAGCCGCGAGCTGGACAAGGACATGCACTACTACCAGTCGTGCCTGGAGGCGTTGCTGGTCAACTCGCCGAACGCGAAGATCTTCTGCCTCGTGCACAAGATGGACCTGGTGGCGGAGGAGCAGCGCGACATAATATTCAAGGAGCGCGAGGAGGACCTGAAGCGCTGTTCGCGCCCGCTCGAGTGTACGGCATTCCGGACGAGCATCTGGGACGAGACGCTGTACCGGGCGTGGAGCAGCATCGTCTACCAGCTGATCCCGAACGTGAAGGCGCTGGAGCACTCGCTCAACTACTTCGCGAACGTGGTGG ]
[+] EMBL BM656469 [ ccgAAAAGGTGCTCCTGATGGGCAAGAGCGGCTCTGGCAAGACCAGCATGCGTTCGATCATCTTCGCCAACTACATCGCCCGTGACACACGAAGGCTGGGGGCCACAATCGATGTCGAACACTCACACGTCCGCTTTTTGGGCAATCTCGTGCTCAACCTGTGGGACTGCGGTGGGCAGGAATCGTTCATGGAGCAGTACTTCGCCTCACAGAAGGACAACATCTTCCGGAACGTGGAGGTGCTGATCTACGTGTTCGATGTGGAGAGCCGCGAGCTGGACAAGGACATGCACTACTACCAGTCGTGCCTGGAGGCGTTGCTGGTCAACTCGCCGAACGCGAAGATCTTCTGCCTCGTGCACAAGATGGACCTGGTGGCGGAGGAGCAGCGCGACATAATATTCAAGGAGCGCGAGGAGGACCTGAAGCGCTGTTCGCGCCCGCTCGAGTGTACGGCATTCCGGACGAGCATCTGGGACGAGACGCTGTACCGGGCGTGGAGCAGCATCGTCTACCAGCTGATCCCGAACGTGAAGGCGCTGGAGCACTCGCTCAACTACTTCGCGAACGTGGTGGACGCGGACGAGGTGCTGCTGTTCGAGCGGGCCACCTTTCTGGTGATTTCGCACTGCCAGCGCAAACAGCACCGGGACAGCCACCGGTTTCGAGAAGGTGTCGAACATCATCAAACAGTTC]
consensusID : consensus_6094#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 697 fasta sequence
[CCGGGACTCGTTACTGCTGGGTCCAAAACTAGACAAGAAAAGAACAAAAAAACAGGCCTTTTTTACCGGTTCCACCATGAAAAGGTGCACTATCTAAGTTTAATTAAGTAGTGAACCGTGAGCTACGCAAAGGATAATGTATGCAATAGATATTACGAAAGCAGCATAGGAGTACAGCAGCCGTCGAGGTGTGCGATAAGAACGAACACACACACACACGAAATACACGACGGTGTAAGATGTAATCAGTATATCGATAGAGCGAAACGATTAATGTGTGTTGGTGTGTGAAGAACGAGTTTTGGAGCCGCGAGAGTCGAGGCCAACGCGCAGAAATTAGCCCCCAACTGCATTCTCTCGGTGACTCATTCCCCGCTCATCCCGCCGGTTGCTGCTCAAGATGGATGGATGGTACACGACCATTTGCTCCTGTGAAAAGGGAAAAGATGGACGCTGCTGCTACTGCAAACACCACTGCTACTACTACTACTACGACGTACCTTCCTCGTCATCGTGCAACGGCTGTGGATGTGTGCGTGTATTAGAGCGATGGAACCGTCATTGTTCCTCCCGCACACCCCTTCTACACGTGCCCCTGGAATGCTGTCCCTGTCCCGGATGATGCTGCTGCTGCGGAAAGGCCCTCCCGTGCGTTCTACACCCTGTCCCGCACCGCTACCCGTCGCCTGTCCTGCCG]
[+] EMBL BM652156 [CCGGGACTCGTTACTGCTGGGTCCAAAACTAGACAAGAAAAGAACAAAAAAACAGGCCTTTTTTACCGGTTCCACCATGAAAAGGTGCACTATCTAAGTTTAATTAAGTAGTGAACCGTGAGCTACGCAAAGGATAATGTATGCAATAGATATTACGAAAGCAGCATAGGAGTACAGCAGCCGTCGAGGTGTGCGATAAGAACGAACACACACACACACGAAATACACGACGGTGTAAGATGTAATCAGTATATCGATAGAGCGAAACGATTAATGTGTGTTGGTGTGTGAAGAACGAGTTTTGGAGCCGCGAGAGTCGAGGCCAACGCGCAGAAATTAGCCCCCAACTGCATTCTCTCGGTGACTCATTCCCCGCTCATCCCGCCGGTTGCTGCTCAAGATGGATGGATGGTACACGACCATTTGCTCCTGTGAAAAGGGAAAAGATGGACGCTGCTGCTACTGCAAACACCACTGCTACTACTACTACTACGACGTACCTTCCTCGTCATCGTGCAACGGCTGTGGATGTGTGCGTGTATTAGAGCGATGGAACCGTCATTGTTCCTCCCGCACACCCCTTCTACACGTGCCCCTGGAATGCTGTCCCTGTCCCGGATGATGCTGCTGCTGCGGAAAGGCCCTCCCGTGCGTTCTACACCCTGTCCCGCACCGCTACCCGTCGCCTGTCCTGCCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6094#0 CCGGTAATTTTTTCGTGTACATTCTACGCTTTTATTTAGACGCTTGACGCTTCGGTGGCC 60
consensus_6094#1 ------------------------------------------------------------
consensus_6094#0 GTGCGCACATATTTCTTCCCCGCAGCCAAACTAGCGCGCCCAGACACAATGAAGAAAAAG 120
consensus_6094#1 -CCGGGACTCGTTACTGCTGGGTC-CAAAACTAG---ACAAGAAAAGAACAAAAAAACAG 55
* ** ** ** * * * ******* * * * ** ** *** **
consensus_6094#0 GTGCTCCTGATGGGCAAGAGCGGCTCTGGCAAGACCAGCATGCGTTCGATCATCTTCGCC 180
consensus_6094#1 GCCTTTTTTAC---------CGGTTCCACCATGAAAAG-GTGCACTATCTAAGTTTAATT 105
* * * * *** ** ** ** ** *** * * * **
consensus_6094#0 AACTACATCGCCCGTGA--CACACGAAGGCTGGGGGCCACAATCGATGTCGAACACTCAC 238
consensus_6094#1 AAGTA-GTGAACCGTGAGCTACGCAAAGGATAATGTATGCAATAGATATT--------AC 156
** ** * ****** ** * **** * * **** *** * **
consensus_6094#0 ACGTCCGCTTTTTGGGCAATCTCGTGCTCAACCTGTGGGACTGCGGTGGGCAGGAATCGT 298
consensus_6094#1 GAAAGCAGCATAGGAGTACAGCAGCCGTCGAGGTGTGCGATAAGAACGAACACACA-CAC 215
* * * * * * ** * **** ** * ** * *
consensus_6094#0 TCATGGAGCAGTACTTCGCCTCACAGAAGGACAACATCTTCCGGAACGTGGAGGTGCTGA 358
consensus_6094#1 ACACGAAATA-CACGACGGTGTAAGATGTAATCAGTATATCGATAGAGCGAAACGATTAA 274
** * * * ** ** * * * ** * * * * * *
consensus_6094#0 TCTACGTGTTCGATGTGGAGAGCCGCGAGCTGGACAAGGACATGCACTACTACCAGTCGT 418
consensus_6094#1 TGTGTGT---TGGTGTGTGAAGA-ACGAGTTTTGGAGCCGCGAGAGTCGAGGCCAA-CGC 329
* * ** * **** ** **** * * * * *** **
consensus_6094#0 GCCTGGAGGCGTTGCTGGTCA-ACTCGCCGAACGCGAAGATCTTCTGCCTCGTGCACAAG 477
consensus_6094#1 GCAGAAATTAGCCCCCAACTGCATTCTCTCGGTG-ACTCATTCCCCGCTCATCCCGCCGG 388
** * * * * ** * * ** * ** * * *
consensus_6094#0 ATGGACCTGGTGGCGGAGGAGCAGCGCGACATAATATTCAAGGAGCGCGAGGAGGACCTG 537
consensus_6094#1 TTGCTGCTCAAGATGGATGGATGGT---ACACGACCATTTGCTCCTGTGAAAAGG----G 441
** ** * *** * * *** * * * ** *** *
consensus_6094#0 AAGCGCTGTTCGCGCCCGCTCGAGTGTACGGCATTCCGGACGAGCATCTGGGACGAGACG 597
consensus_6094#1 AAAAGATGGACGCTGCTGCTACTGCAAACACCACTGCT-ACTACTA-CTACTACGACGTA 499
** * ** *** * *** * ** ** * * ** * * ** ****
consensus_6094#0 CTGTACCGGGCGTGGAGCAGCATCGTCTACCAGCTGATCCCGAACGTGAAGGCGCTGGAG 657
consensus_6094#1 CCTTCCTCGTCATCGTGCAAC---GGCTGT-GGATGTGTGCGTGTATTAGAGCGATGGAA 555
* * * * * * * *** * * ** * ** ** * * *** ****
consensus_6094#0 CACTCGCT-CAACTACTTCGCGAACGTGGTGGACGCGGAC--GAGGTGCTGCTGTTCGAG 714
consensus_6094#1 CCGTCATTGTTCCTCCCGCACACCCCTTCTACACGTGCCCCTGGAATGCTGTCCCTGTCC 615
* ** * ** * * * * * * *** * * * ***** *
consensus_6094#0 CGGGCCACCTTTCTGGTG-ATTTCGCACTGCCAGCGCAAACAGCACCGGGACAGCCACCG 773
consensus_6094#1 CGGATGATGCTGCTGCTGCGGAAAGGCCCTCCCGTGCGTTCTACACCCTGTCCCGCACCG 675
*** * * *** ** * * ** * ** * **** * * *****
consensus_6094#0 GTTTCGAGAAGGTGTCGAACATCATCAAACAGTTC 808
consensus_6094#1 CTACCCGTCGCCTGTCCTGCCG------------- 697
* * **** *
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||