cluster # 6099

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Anopheles gambiae
cluster # 6099 cluster # 6099 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6099#0 length = 821 sequences # 3

consensus_6099#1 length = 492 sequences # 1
consensus_6099#2 length = 483 sequences # 1

consensusID : consensus_6099#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 821
fasta sequence

                              [TGGCTCACGCAGAATCGGGCACGNTNGGATCTGTAGGCATAGGCCGCCACGCACAAAATTTGCCCGCGCACTGCACCGCATCGTAAAGTGAACGAAGTACGCGACGACGATGGATTC-GAACAGC-AATTTTAACACCGTCGCCCTAAAATCGACAGCGTGCGCTCTGAACGCCAACAGC-ATCGTAA-CCAAAAGTGCACACGATCCAGTAAATTGTACAGACGAAATGGTGGAAACGGGCACCAAGCGCAAAGCAGACATGAGCCTAGCGAAGCAGGAAATCGGTGCCAAACGGTTCGCGCTGGGCAATCTGACCAATGCCGAAACCACGGGCACCGC-GTCGACCATCGGAGCGGTCCTGAAGAGCAAGA-TGACCAAC-TTTC-TGAGCAAGCCGA-TGA-T-GTC-GTCGAACAAA-TTGA-TCGGGGACGTCGCCAAACCAACATGGAAGCCAAACGAGCAACATTTCAAGAAAAACAAACCACCGAAGATCCATGGCGTCCCCAGGATCATGACGCGCGCCGCTATGCGTAAACAGCAAGCCGTCGATGTGAATCAAAAGACACAACAAGACAGACCCATCTCGGTCATGAAGGGCAAAGAGAATGTACCGTCGTCGTCAGACACCGTCTCCGGAAACGTTGCGGGTGTGTCAGCTCTCGCTCAAAGCCGCAAAGCGGAAGAGTTGGTTGCTAAACCGAAACCCCTTGCGACTGTTGTCACAAATCGTGCATCATGGTTGTTCAAAAGCACATGAAGGTAACGTTGATTCCTGCACTGCATTATACAAAGTAAGACCCCTTTTCATGATGAACTGACCAAGAAATAGC]

[+] EMBL BX467600             [TGGCTCACGCAGAATCGGGCACGNTNGGATCTGTAGGCATAGGCCGCCACGCACAAAATTTGCCCGCGCACTGCACCGCATCGTAAAGTGAACGAAGTACGCGACGACGATGGATTCGGAACAGCGAATTTTAACACCGTCGCCCTAAAATCGACAGCGTGCGCTCTGAACGCCAACAGCGATCGTAANCCAAAAGTGCACACGATCCAGTAAATTGTACAGACGAAATGGTGGAAACGGGCACCAAGCGCAAAGCAGACATGAGCCTAGCGAAGCAGGAAATCGGTGCCAAACGGTTCGCGCTGGGCAATCTGACCAATGCCGAAACCACGGGCACCGCGGTCGACCATCGGAGCGGTCCTGAAGAGCAAGAGTGACCAACGTTTCGTGAGCAAGCCGAGTGAGTGGTCNGTCGAACAAAGTTGAGTCG                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL BX625293             [                                                        AATTTGCCCGCGCAC GCACCGCATCGTAAAGTGAACGAAGTACGCGACGACGATGGCTTC GAACAGC AATTTTAACACCGTCGCCCTAAAATCGACAGCGTGCGCTCTGAACGCCAACAGC ATCGTAA CCAAAAGTGCACACGATCCAGTAAATTGTACAGACGAAATGGTGGAAACGGGCACCAAGCGCAAAGCAGACATGAGCCTAGCGAAGCAGGAAATCGGCGCCAAACGGTTCGCGCTGGGCAATCTGACCAATGCCGAAACCACGGGCACCGC GTCGACCATCGGATCGGTCCTGAAGAGCAAGA TGACCAAC TTTC TGAGCAAGCCGA TGA T GTC GTCGAACAAA TTGA TCGGGGACGTCGCCAAACCAACATGGAAGCCAAACGAGCAACATTTCAAGAAAAACAAACCACCGAAGATCCATGGCGTCCCCAGGATCATGACGCGCGCCGCTATGCGTAAACAGCAAGCCGTCGATGTGAATCAAAAGACACAACAAGACAGACCCATCTCGGTCATGAAGGGCAAAGAGAATGTACCGTCGTCGTCAGACACCGTCTCCGGAAACGTTGCGGGTGTGTCAGCTCTCGCTCAAAGCCGCAAAGCGGAAGAGTTGGTTGCTAAACCGAAACCCCTTGCGACTGTTGTCACAAATCGTGCATCATGGTTGTTCAAAAGCACATGAAGGTAACGTTGATTCCTGCACTGCATTATACAAAGTAAGACCCCTTTTCATGATGAACTGACCAAGAAATAGC]
[+] EMBL AGA284624            [                                                                                      AGTGAACGAAGTACGCGACGACGATGGATTC GAACAGC AATTTTAACACCGTCGCCCTAAAATCGACAGCGTGCGCTCTGAACGCCAACAGC ATCGTAA CCAAAAGTGCACACGATCCAGTAAATTGTACAGACGAAATGGTGGAAACGGGCACCAAGCGCAAAGCAGACATGAGCCTAGCGAAGCAGGAAATCGGTGCCAAACGGTTCGCGCTGGGCAATCTGACCAATGCCGAAACCACGGGCACCGC GTCGACCATCGGAGCGGTCCTGAAGAGCAAGA TGACCAAC TTTC TGAGCAAGCCGA TGA T GTC GTCGAACAAA TTGA T                                                                                                                                                                                                                                                                                                                                                                                                                       ]




>consensus_6099#0
TGGCTCACGCAGAATCGGGCACGNTNGGATCTGTAGGCATAGGCCGCCACGCACAAAATT
TGCCCGCGCACTGCACCGCATCGTAAAGTGAACGAAGTACGCGACGACGATGGATTCGAA
CAGCAATTTTAACACCGTCGCCCTAAAATCGACAGCGTGCGCTCTGAACGCCAACAGCAT
CGTAACCAAAAGTGCACACGATCCAGTAAATTGTACAGACGAAATGGTGGAAACGGGCAC
CAAGCGCAAAGCAGACATGAGCCTAGCGAAGCAGGAAATCGGTGCCAAACGGTTCGCGCT
GGGCAATCTGACCAATGCCGAAACCACGGGCACCGCGTCGACCATCGGAGCGGTCCTGAA
GAGCAAGATGACCAACTTTCTGAGCAAGCCGATGATGTCGTCGAACAAATTGATCGGGGA
CGTCGCCAAACCAACATGGAAGCCAAACGAGCAACATTTCAAGAAAAACAAACCACCGAA
GATCCATGGCGTCCCCAGGATCATGACGCGCGCCGCTATGCGTAAACAGCAAGCCGTCGA
TGTGAATCAAAAGACACAACAAGACAGACCCATCTCGGTCATGAAGGGCAAAGAGAATGT
ACCGTCGTCGTCAGACACCGTCTCCGGAAACGTTGCGGGTGTGTCAGCTCTCGCTCAAAG
CCGCAAAGCGGAAGAGTTGGTTGCTAAACCGAAACCCCTTGCGACTGTTGTCACAAATCG
TGCATCATGGTTGTTCAAAAGCACATGAAGGTAACGTTGATTCCTGCACTGCATTATACA
AAGTAAGACCCCTTTTCATGATGAACTGACCAAGAAATAGC

consensusID : consensus_6099#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 492
fasta sequence

                              [AGACACCGTCTCCGGAAACGTTGCGGGTGTGTCAGCTCTCGCTCAAAGCCGCAAAGCGGAAGAGTTGGTTGCTAAACCGAAACCCCTTGCGACTGTTGTCACAAATCGTGCATCATGGAAAAATGTATTAAGAGCGCGGTCGACAACCGCAGCGGCTGAAATCGCCACAAACGACTCTGCAAGCAATGGCGAGCAGAAAAAGTCGCAGCAGGCCACAAATGCCTGCCTGGCCAAGCATGCCGAGGTGGTGGTGAAGCCGAAGCGTGGCCGAATGTCGAGCGAGTTCGAGGCAAGCGACAACTCGCTGTACGTGACAGCGGTTGATAATTTTGAGGACGGTTCAGCAGCCTCCGCCGGTACTGGGCCGGATTGTGTAGACCCGCTTGGGCCGGACTGTGTGGATCCGCTTGGGCCGGAGATTGCACCACGCAACGAACCGGCACCACCGGCGGCAAAACCACTCGCTGCCCGAGCTGATGGAAAGCCTAAGCA]

[-] EMBL AGA283342            [AGACACCGTCTCCGGAAACGTTGCGGGTGTGTCAGCTCTCGCTCAAAGCCGCAAAGCGGAAGAGTTGGTTGCTAAACCGAAACCCCTTGCGACTGTTGTCACAAATCGTGCATCATGGAAAAATGTATTAAGAGCGCGGTCGACAACCGCAGCGGCTGAAATCGCCACAAACGACTCTGCAAGCAATGGCGAGCAGAAAAAGTCGCAGCAGGCCACAAATGCCTGCCTGGCCAAGCATGCCGAGGTGGTGGTGAAGCCGAAGCGTGGCCGAATGTCGAGCGAGTTCGAGGCAAGCGACAACTCGCTGTACGTGACAGCGGTTGATAATTTTGAGGACGGTTCAGCAGCCTCCGCCGGTACTGGGCCGGATTGTGTAGACCCGCTTGGGCCGGACTGTGTGGATCCGCTTGGGCCGGAGATTGCACCACGCAACGAACCGGCACCACCGGCGGCAAAACCACTCGCTGCCCGAGCTGATGGAAAGCCTAAGCA]




>consensus_6099#1
AGACACCGTCTCCGGAAACGTTGCGGGTGTGTCAGCTCTCGCTCAAAGCCGCAAAGCGGA
AGAGTTGGTTGCTAAACCGAAACCCCTTGCGACTGTTGTCACAAATCGTGCATCATGGAA
AAATGTATTAAGAGCGCGGTCGACAACCGCAGCGGCTGAAATCGCCACAAACGACTCTGC
AAGCAATGGCGAGCAGAAAAAGTCGCAGCAGGCCACAAATGCCTGCCTGGCCAAGCATGC
CGAGGTGGTGGTGAAGCCGAAGCGTGGCCGAATGTCGAGCGAGTTCGAGGCAAGCGACAA
CTCGCTGTACGTGACAGCGGTTGATAATTTTGAGGACGGTTCAGCAGCCTCCGCCGGTAC
TGGGCCGGATTGTGTAGACCCGCTTGGGCCGGACTGTGTGGATCCGCTTGGGCCGGAGAT
TGCACCACGCAACGAACCGGCACCACCGGCGGCAAAACCACTCGCTGCCCGAGCTGATGG
AAAGCCTAAGCA

consensusID : consensus_6099#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 483
fasta sequence

                              [AATTACACCACTCTTCACAGAACGTGTGGCCAGGATGGCGACACGCTCGCGCACATACACACTTTAGGCTAGCTATTTTCTTGGTCAGTTCATCATGAAAGGGGTCTTACTTTGTATAATGCAGTGCAGGAATCAACGTTACCTTCATGTGCTTTTGAACAACCATGAATGTGGTACATCATATAATATTACTCGCGGTGGCGCGGTGGCCCCGGTTTGCACCTTAATCTCATTTGTTACTGACGGCGGCCGGAATGGGGGCGACATTTTCTTTGGTCGTTGCGTCGGCTGCAACTGGTAAGGCGGTGGGAGCCGCTTTGTACATTACGCTTGAGGTGGCGAACAATTTCTCCATACTGGTGATGACGGGGCGTTTGGCCACCTCGAAGAACAGCTCGTGCGAGTATTTCTTGTGCACCGTGTCGAACGAATATTGCCTCGAGCTCATGCCGTTGTTTAGCAGCACGATCGCATCCGTAAATT]

[+] EMBL AGA282404            [AATTACACCACTCTTCACAGAACGTGTGGCCAGGATGGCGACACGCTCGCGCACATACACACTTTAGGCTAGCTATTTTCTTGGTCAGTTCATCATGAAAGGGGTCTTACTTTGTATAATGCAGTGCAGGAATCAACGTTACCTTCATGTGCTTTTGAACAACCATGAATGTGGTACATCATATAATATTACTCGCGGTGGCGCGGTGGCCCCGGTTTGCACCTTAATCTCATTTGTTACTGACGGCGGCCGGAATGGGGGCGACATTTTCTTTGGTCGTTGCGTCGGCTGCAACTGGTAAGGCGGTGGGAGCCGCTTTGTACATTACGCTTGAGGTGGCGAACAATTTCTCCATACTGGTGATGACGGGGCGTTTGGCCACCTCGAAGAACAGCTCGTGCGAGTATTTCTTGTGCACCGTGTCGAACGAATATTGCCTCGAGCTCATGCCGTTGTTTAGCAGCACGATCGCATCCGTAAATT]




>consensus_6099#2
AATTACACCACTCTTCACAGAACGTGTGGCCAGGATGGCGACACGCTCGCGCACATACAC
ACTTTAGGCTAGCTATTTTCTTGGTCAGTTCATCATGAAAGGGGTCTTACTTTGTATAAT
GCAGTGCAGGAATCAACGTTACCTTCATGTGCTTTTGAACAACCATGAATGTGGTACATC
ATATAATATTACTCGCGGTGGCGCGGTGGCCCCGGTTTGCACCTTAATCTCATTTGTTAC
TGACGGCGGCCGGAATGGGGGCGACATTTTCTTTGGTCGTTGCGTCGGCTGCAACTGGTA
AGGCGGTGGGAGCCGCTTTGTACATTACGCTTGAGGTGGCGAACAATTTCTCCATACTGG
TGATGACGGGGCGTTTGGCCACCTCGAAGAACAGCTCGTGCGAGTATTTCTTGTGCACCG
TGTCGAACGAATATTGCCTCGAGCTCATGCCGTTGTTTAGCAGCACGATCGCATCCGTAA
ATT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6099#0      TGGCTCACGCAGAATCGGGCACGNTNGGATCTGTAGGCATAGGCCGCCACGCACAAAATT 60
consensus_6099#1      ------------------------------------------------------------
consensus_6099#2      ------------------------------------------------------------
                                                                                  

consensus_6099#0      TGCCCGCGCACTGCACCGCATCGTAAAGTGAACGAAGTACGCGACGACGATGGATTCGAA 120
consensus_6099#1      ------------------------------------------------------------
consensus_6099#2      ------------------------------------------------------------
                                                                                  

consensus_6099#0      CAGCAATTTTAACACCGTCGCCCTAAAATCGACAGCGTGCGCTCTGAACGCCAACAGCAT 180
consensus_6099#1      -----------------------------AGACACCGT-CTCCGGAAACGTTGCGGGTGT 30
consensus_6099#2      ---------------------------AATTACACCACTCTTCACAGAACGTGTGGCCAG 33
                                                     *** *   *       *            

consensus_6099#0      CGTAACCAAAAGTGCACACGATCCAGTAAATTGTACAGACGAAATGGTGGAAACGGGCAC 240
consensus_6099#1      GTCAGCT-----CTCGCTCAAAGCCGCAAAGCGGAAGAGTTGGTTGCTAAACCGAAACCC 85
consensus_6099#2      GATGGCGACACGCTCGCGCACATACACACTTTAGGCTAGCTATTTTCTTGGTCAGTTCAT 93
                           *        * * *        *                *  *         *  

consensus_6099#0      CAAGCGCAAAGCAGACATGAGCCTAGCGAAGCAGGAAATCGGTGCCAAACGGTTCGCGCT 300
consensus_6099#1      CTTGCG-ACTGTTGTCACAAATCGTGCATCATGGAAAAATG-TATTAAGAG---CGCGGT 140
consensus_6099#2      CATG---AAAGGGGTCTT--ACTTTGTATAATGCAGTGCAGGAATCAACGTTACCTTCAT 148
                      *  *   *  *  * *         *              *     **      *    *

consensus_6099#0      GGGCAATCTGACCAATGCCGAAACCACGGGCACCGCGTCGACCATCGGAGCGGTCCTGAA 360
consensus_6099#1      CGACAACCGCAGCG--GCTGAAATCGC---CACAAA--CGACTCTGCAAGCAATGGCGAG 193
consensus_6099#2      GTGCTTTTGAACAACCATGAATGTGGTA--CATCATA-TAATATTACTCGCGGTGGCGCG 205
                         *      *         *         **        *   *    **  *   *  

consensus_6099#0      GAGCAAGATGACCAACTTTCTGAGCAAGCCGATGATGTCGTC--GAACAAATTGATCGGG 418
consensus_6099#1      CAGAAAAAG---------TCGCAGCAGGCCACAAATGCCTGCCTGGCCAAGCATGCCGAG 244
consensus_6099#2      GTGG--------------CCCCGGTTTGCACCTTAATCTCATTTGTT---ACTGACGGCG 248
                        *                *   *   **     *         *            * *

consensus_6099#0      GACGTCGCCAAACCAACATGGAAGCCAAACGAGCAAC-ATTTCAAGAAAAACAAACCACC 477
consensus_6099#1      GTGGTGGTGAAGCCGA-AGCGTGGCCGAATGTCGAGCGAGTTCGAGGCAAGCGA-CAACT 302
consensus_6099#2      GCCGGAATGGGGGCGACATTTTCTTTGGTCGTTGCGTCGGCTGCAACTGGTAAGGCGGTG 308
                      *  *         * * *            *          *  *          *    

consensus_6099#0      GAAGATCCATGGCGTCCCCAGGATCATGACGCGCGCCGCTATGCGTAAACAGCAAGCCGT 537
consensus_6099#1      CGCTGTACGTGACAGCGGTTG-ATAATTTTGAGGACGGTTCAGCAGCCTCCGCCGGTACT 361
consensus_6099#2      GGAGCCGCTTTGTACATTACGCTTGAGGTGGCGAACAATTTCTC----CATACTGGTGAT 364
                             * *          *  * *    * *  *   *   *        *  *   *

consensus_6099#0      CGATGTGAATCAAAAGACACAACAAGACAGACCCATCTCGGT---CATGAAGGGCAAAGA 594
consensus_6099#1      GGGCCGGATTGTGTAGACCCGCTTGGGCCGGACTGTGTGGAT---CCGCTTGGGCCG-GA 417
consensus_6099#2      GACGGGGCGTTTGGCCACCT-CGAAGAACAGCTCGTGCGAGTATTTCTTGTGCACCGTGT 423
                            *  *      **       *         *     *         *  *   * 

consensus_6099#0      -GAATGTACC--GTCGTCGTCAGACACCGTCTCCGGAAACGTTGCGGGTGTGTCAGCTCT 651
consensus_6099#1      -GATTGCACCACGCAACGAACCGGCACCACCGGCGGCAAAACCACTCGC-TGCCCGAGCT 475
consensus_6099#2      CGAACGAATATTGCCTCGAGCTCATGCCGTTGTTTAGCAGCACGATCGCATCCGTAAATT 483
                       **  * *    *       *     **          *        *  *        *

consensus_6099#0      CGCTCAAAGCCGCAAAGCGGAAGAGTTGGTTGCTAAACCGAAACCCCTTGCGACTGTTGT 711
consensus_6099#1      GATGGAAAGCC--TAAGCA----------------------------------------- 492
consensus_6099#2      ------------------------------------------------------------
                                                                                  

consensus_6099#0      CACAAATCGTGCATCATGGTTGTTCAAAAGCACATGAAGGTAACGTTGATTCCTGCACTG 771
consensus_6099#1      ------------------------------------------------------------
consensus_6099#2      ------------------------------------------------------------
                                                                                  

consensus_6099#0      CATTATACAAAGTAAGACCCCTTTTCATGATGAACTGACCAAGAAATAGC 821
consensus_6099#1      --------------------------------------------------
consensus_6099#2      --------------------------------------------------