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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6104#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 953 fasta sequence
[GGTGAAATTCATTTTCGCTGCGTCGGGGAAAAGATCTCCTAAACACACC-GAAAAACGCTCCTAA-TTCACAATGAAAATCACCAAACACAAGAAAACTCGTAAGTATATGAGTTTTTACATCAACAACTTTGGATTTCGCGAACCACTGCTCGTGCTGATCGATGGAAGCTTCTGCCATGCAGCGTACAAGATCCGCCTGCAAATAGAAGAGCAGCTAAAAAAGTACTTCCAGTGTGAGGTAAAGCCCATCGTCACGGCATGCATCATCACCGAGACGGACAATCTCGGACCGGGCTTCACGGGCACCAGTCAGCTGCTGAAGAAATTCCTCGTACATCGCTGCGGCCACGAGAAGCGACCGCTCGACGGTTCGTCCTGCATCAAATCCATGACCAAATCGTGCCACTACATCGTTGCCACGCAGGACCGAGCGCTGCAGGAGTGGGTCCGCGAGCATCCGGGAATACCGCTTTTCTACCTGCACAATGCATCCGTCCCCACGCTGGTCCAACCGTCGGAGGCCCACCGTCA-GCGGCTGCGGAAGGGCAGAAGAATCGGGTAGGCATTCGTGAACTTGATCAGCAAACGATACAAAAGCTAAAAGTGAAGGAAGGGCTCGTTGCGCCCGAATCGAACGGTGGCCCCAAGAAGAAGCGAAAGGTGAAAAACCCCAACCCGCTGTCGTGTAAAAAGCCCAAAAAGACGAAAAAGGGGGTGGAAGGAAAGGGAACACCGTCGGAGAGCAAGCCACCCACCGTGGGGGAGGGTGGAGTGGTAAAGAAAAAGAGCAGAAAGCGCATCAAGCTGCCGAAACACGTCATCGAGCATCTGAAAGCCGGCAACGGTGGGTGGTGCTGGGGCGTCATAAATGTAAGCAAAAACTGTAAAATAAAATTCGGCAATTAAAGCTCATTGAAAAAAAAAAAAAAAAAAAAAAAAAGGCCAAATGTTCC]
[+] EMBL CNS095QR [GGTGAAATTCATTTTCGCTGCGTCGGGGAAAAGATCTCCTAAACACACCACAAAAACGCTCCTAA TTCACAATGAAAATCACCAAACACAAGAAAACTCGTAAGTATATGAGTTTTTACATCAACAACTTTGGATTTCGCGAACCACTGCTCGTGCTGATCGATGGAAGCTTCTGCCATGCAGCTTACAAGATCCGCCTGCAAATAGAAGAGCAGCTAAAAAAGTACTTCCAGTGTGAGGTAAAGCCCATCGTCACGGCATGCATCATCACCGAGACGGACAATCTCGGACCGGGCTTCACGGGCACCAGTCAGCTGCTGAAGAAATTCCTCGTACATCGCTGCGGCCACGAGAAGCGACCGCTCGACGGTTCGTCCTGCATCAAATCCATGACCAAATCGTGCCACTACATCGTTGCCACGCAGGACCGAGCGCTGCAGGAGTGGGTCCGCGAGCATCCGGGAATACCGCTTTTCTACCTGCACAATGCATCCGTCCCCACGCTGGTCCAACCGTCGGAGGCCCACCGTCA GCGGCTGCGGAAGGGCAGAAGAATCGGGTAGGCATTCGTGAACTTGATCAGCAAACGATACAAAAGCTAAAAGTGAAGGAAGGGCTCGTTGCGCCCGAATCGAACGGTGGCCCCAAGAAGAAGCGAAAGGTGAAAAACCCCAACCCGCTGTCGTGTAAAAAGCCCAAAAAGACGAAAAAGGGGGTGGAAGGAAAGGGAACACCGTCGGAGAGCAAGCCACCCACCGTGGGGGAGGGTGGAGTGGTAAAGAAAAAGAGCAGAAAGCGCATCAAGCTGCCGAAACACGTCATCGAGCATCTGAAAGCCGGCAACGGTGGGTGGTGCTGGGGCGTCATAAATGTAAGCAAAAACTGTAAAATAAAATTCGGCAATTAAAGCTCATTGAAAAAAAAAAAAAAAAAAAAAAAAAGGCCAAATGTTCC]
[+] EMBL BM605966 [ ccgcCCAAAACACACC GAAAAACGCTCCTAA TTCACAATGAAAATCACCAAACACAAGAAAACTCGTAAGTATATGAGTTTTTACATCAACAACTTTGGATTTCGCGAACCACTGCTCGTGCTGATCGATGGAAGCTTCTGCCATGCAGCGTACAAGATCCGCCTGCAAATAGAAGAGCAGCTAAAAAAGTACTTCCAGTGTGAGGTAAAGCCCATCGTCACGGCATGCATCATCACCGAGACGGACAATCTCGGACCGGGCTTCACCGGCACCAGTCAGTTGTTGAAGAAATTCCTCGTACATCGCTGCGGCCACGAGAAGCGACCGCTCGACGGTTCGTCCTGCATCAAATCCATGACCAAATCGTGCCACTACATCGTTGCTACGCAGGACCGAGCGCTGCAGGAGTGGGTTCGCGAGCATCCGGGTATACCGCTTTTCTACCTGCACAACTCATCCGTCCCCACGCTGGTCCAACCGTCGGAGGCCCACCGTCAGGCGGCTGCAGAAGGGCAGAAGAGTCGGGTAGGAATTCGTGAACTTGATCAGCAAACGATACAAAAGCTAAAAGTGAAGGAAGGGCTCGTTGCGCCCGAATCGAACGGTGGCCCCAAGAAGAAGCGAAAGGTGAAAAACCCCAACCCGCTGTCGTGT AAAAGCCCAAAAAGACGAAAAAGGGGGTGGACGGAAAGGGGACGCCGTCGGAGAGCAAGCCACCCACCGTGGG ]
[+] EMBL CNS08PX0 [ AAACACACC GAAAAACGCTCCTAATTTCACAATGAAAATCACCAAACACAAGAAAACTCGTAAGTATATGAGTTTTTACATCAACAACTTTGGATTTCGCGAACCACTGCTCGTGCTGATCGATGGAAGCTTCTGCCATGCAGCGTACAAGATCCGCCTGCAAATAGAAGAGCAG ]
consensusID : consensus_6104#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 862 fasta sequence
[GAAAATCACCAAACACAAGAAAACTCGTAAGTATATGAGTTTTTACATCAACAACTTTGGTTTTCGCGAACCACTGCTCGTGCTGATCGATGGAAGCTTTTGCCATGCAGCTTACAAGATCCGCCTGCAAATAGAAGAGCAGCTAAAAAAGTACTTCCAGTGTGAGGTAAAGCCCATCGTCACGGCATGCATCATCACCGAAACGGACAATCTCGGACCGGGCTTTACGGGCACCAGTCAGCTGCTGAAGAAATTCCTCGTACATCGCTGCGGGCCACGAGAAGCGACCGCTCGACGGTTCGTCCTGCATCAAATCCATGACCAAATCGTGCCACTAAATCGTTGCCACGCAGGACCGAGCGCTGCAGGAGTGGGTCCGCGAGCATCCGGGAATACCGCTTTTCTACCTGCAAAATGCATCCGTCCCCACGCTGGTCCAACCGTCGGAGGCCCACCGTCAGGCGGCTGCGGAAGGGCAGAAGAATCGGGTAGGCATTCGTGAACTTGATCAGCAAACGATACAAAAGCTAAAAGTGAAGGAAGGGCTCGTTGCGCCCGAATCGAACGGTGGCCCCAAGAAGAAGCGAAAGGTGAAAAACCCCAACCCGCTGTCGTGTAAAAAGCCCAAAAAGACGAAAAAGGGGGTGGAAGGAAAGGGAAAACCGTCGGAGAGCAAGCCACCCACCGTGGGGGAGGGTGGAGTGGTAAAGAAAAAGAGCAGAAAGCGCATCAAGCTGCCGAAACACGTCATCGAGCATCTGAAAGCCCGCAACGGTGGTGGTGCTGGGGCGTCATAAATGTAAGCAAAAACTGTAAAATAAAATTCGGCAATTAAAAATCAAAAACCCCCCCCCCCCCCCCC]
[-] EMBL CNS095QS [GAAAATCACCAAACACAAGAAAACTCGTAAGTATATGAGTTTTTACATCAACAACTTTGGTTTTCGCGAACCACTGCTCGTGCTGATCGATGGAAGCTTTTGCCATGCAGCTTACAAGATCCGCCTGCAAATAGAAGAGCAGCTAAAAAAGTACTTCCAGTGTGAGGTAAAGCCCATCGTCACGGCATGCATCATCACCGAAACGGACAATCTCGGACCGGGCTTTACGGGCACCAGTCAGCTGCTGAAGAAATTCCTCGTACATCGCTGCGGGCCACGAGAAGCGACCGCTCGACGGTTCGTCCTGCATCAAATCCATGACCAAATCGTGCCACTAAATCGTTGCCACGCAGGACCGAGCGCTGCAGGAGTGGGTCCGCGAGCATCCGGGAATACCGCTTTTCTACCTGCAAAATGCATCCGTCCCCACGCTGGTCCAACCGTCGGAGGCCCACCGTCAGGCGGCTGCGGAAGGGCAGAAGAATCGGGTAGGCATTCGTGAACTTGATCAGCAAACGATACAAAAGCTAAAAGTGAAGGAAGGGCTCGTTGCGCCCGAATCGAACGGTGGCCCCAAGAAGAAGCGAAAGGTGAAAAACCCCAACCCGCTGTCGTGTAAAAAGCCCAAAAAGACGAAAAAGGGGGTGGAAGGAAAGGGAAAACCGTCGGAGAGCAAGCCACCCACCGTGGGGGAGGGTGGAGTGGTAAAGAAAAAGAGCAGAAAGCGCATCAAGCTGCCGAAACACGTCATCGAGCATCTGAAAGCCCGCAACGGTGGTGGTGCTGGGGCGTCATAAATGTAAGCAAAAACTGTAAAATAAAATTCGGCAATTAAAAATCAAAAACCCCCCCCCCCCCCCCC]
consensusID : consensus_6104#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 362 fasta sequence
[GCGTGCAACACGCAGTTTTCGCTGCCGTCGGGGAAAAGATCTCCCAAAACACACCGAAAAACGCTCCTAATTCACAATGAAAATCACCAAACACAAGAAAACTCCGTTAAGTATATGAGTTTTTACATCAACCAACTTTGGANTTCGCGAAACCACCTGTATCGTGCCTGAATCGATGGAAGCTTCTGCCATGCAGCCGTACAAGATCCCGCCTGCAAATAGAAGAGCAGCTAAAAAAGTACTTCCAGTGTGAGGTAAAGCCCATCGTCACGGCATGCATCATCACCGAGAACGGACAATTCTCGGACCGGGGCTTCACCGGCACCAAGTCAGTTGTTGAAGAAATTCCTCGTACATCCGCT]
[+] EMBL CF541886 [GCGTGCAACACGCAGTTTTCGCTGCCGTCGGGGAAAAGATCTCCCAAAACACACCGAAAAACGCTCCTAATTCACAATGAAAATCACCAAACACAAGAAAACTCCGTTAAGTATATGAGTTTTTACATCAACCAACTTTGGANTTCGCGAAACCACCTGTATCGTGCCTGAATCGATGGAAGCTTCTGCCATGCAGCCGTACAAGATCCCGCCTGCAAATAGAAGAGCAGCTAAAAAAGTACTTCCAGTGTGAGGTAAAGCCCATCGTCACGGCATGCATCATCACCGAGAACGGACAATTCTCGGACCGGGGCTTCACCGGCACCAAGTCAGTTGTTGAAGAAATTCCTCGTACATCCGCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6104#0 ------GGTGAAATTCATTTTCGCTGCGTCGGGGAAAAGATCTCCTAAACACACCGAAAA 54
consensus_6104#1 ------------------------------------------------------------
consensus_6104#2 GCGTGCAACACGCAGTTTTCGCTGCCGTCGGGGAAAAGATCTCCCAAAACACACCGAAAA 60
consensus_6104#0 ACGCTCCTAATTCACAATGAAAATCACCAAACACAAGAAAACTCG--TAAGTATATGAGT 112
consensus_6104#1 ------------------GAAAATCACCAAACACAAGAAAACTCG--TAAGTATATGAGT 40
consensus_6104#2 ACGCTCCTAATTCACAATGAAAATCACCAAACACAAGAAAACTCCGTTAAGTATATGAGT 120
************************** *************
consensus_6104#0 TTTTACATCAAC-AACTTTGGATTTCGCGAA-CCAC-TGC-TCGTGCT--GATCGATGGA 166
consensus_6104#1 TTTTACATCAAC-AACTTTGGTTTTCGCGAA-CCAC-TGC-TCGTGCT--GATCGATGGA 94
consensus_6104#2 TTTTACATCAACCAACTTTGGANTTCGCGAAACCACCTGTATCGTGCCTGAATCGATGGA 180
************ ******** ******** **** ** ****** *********
consensus_6104#0 AGCTTCTGCCATGCAGCG-TACAAGATCC-GCCTGCAAATAGAAGAGCAGCTAAAAAAGT 224
consensus_6104#1 AGCTTTTGCCATGCAGCT-TACAAGATCC-GCCTGCAAATAGAAGAGCAGCTAAAAAAGT 152
consensus_6104#2 AGCTTCTGCCATGCAGCCGTACAAGATCCCGCCTGCAAATAGAAGAGCAGCTAAAAAAGT 240
***** *********** ********** ******************************
consensus_6104#0 ACTTCCAGTGTGAGGTAAAGCCCATCGTCACGGCATGCATCATCACCGA-GACGGACAAT 283
consensus_6104#1 ACTTCCAGTGTGAGGTAAAGCCCATCGTCACGGCATGCATCATCACCGA-AACGGACAAT 211
consensus_6104#2 ACTTCCAGTGTGAGGTAAAGCCCATCGTCACGGCATGCATCATCACCGAGAACGGACAAT 300
************************************************* *********
consensus_6104#0 -CTCGGACCGGG-CTTCACGGGCACCA-GTCAGCTGCTGAAGAAATTCCTCGTACATC-G 339
consensus_6104#1 -CTCGGACCGGG-CTTTACGGGCACCA-GTCAGCTGCTGAAGAAATTCCTCGTACATC-G 267
consensus_6104#2 TCTCGGACCGGGGCTTCACCGGCACCAAGTCAGTTGTTGAAGAAATTCCTCGTACATCCG 360
*********** *** ** ******* ***** ** ********************* *
consensus_6104#0 CTGCGG-CCACGAGAAGCGACCGCTCGACGGTTCGTCCTGCATCAAATCCATGACCAAAT 398
consensus_6104#1 CTGCGGGCCACGAGAAGCGACCGCTCGACGGTTCGTCCTGCATCAAATCCATGACCAAAT 327
consensus_6104#2 CT---------------------------------------------------------- 362
**
consensus_6104#0 CGTGCCACTACATCGTTGCCACGCAGGACCGAGCGCTGCAGGAGTGGGTCCGCGAGCATC 458
consensus_6104#1 CGTGCCACTAAATCGTTGCCACGCAGGACCGAGCGCTGCAGGAGTGGGTCCGCGAGCATC 387
consensus_6104#2 ------------------------------------------------------------
consensus_6104#0 CGGGAATACCGCTTTTCTACCTGCACAATGCATCCGTCCCCACGCTGGTCCAACCGTCGG 518
consensus_6104#1 CGGGAATACCGCTTTTCTACCTGCAAAATGCATCCGTCCCCACGCTGGTCCAACCGTCGG 447
consensus_6104#2 ------------------------------------------------------------
consensus_6104#0 AGGCCCACCGTCAG-CGGCTGCGGAAGGGCAGAAGAATCGGGTAGGCATTCGTGAACTTG 577
consensus_6104#1 AGGCCCACCGTCAGGCGGCTGCGGAAGGGCAGAAGAATCGGGTAGGCATTCGTGAACTTG 507
consensus_6104#2 ------------------------------------------------------------
consensus_6104#0 ATCAGCAAACGATACAAAAGCTAAAAGTGAAGGAAGGGCTCGTTGCGCCCGAATCGAACG 637
consensus_6104#1 ATCAGCAAACGATACAAAAGCTAAAAGTGAAGGAAGGGCTCGTTGCGCCCGAATCGAACG 567
consensus_6104#2 ------------------------------------------------------------
consensus_6104#0 GTGGCCCCAAGAAGAAGCGAAAGGTGAAAAACCCCAACCCGCTGTCGTGTAAAAAGCCCA 697
consensus_6104#1 GTGGCCCCAAGAAGAAGCGAAAGGTGAAAAACCCCAACCCGCTGTCGTGTAAAAAGCCCA 627
consensus_6104#2 ------------------------------------------------------------
consensus_6104#0 AAAAGACGAAAAAGGGGGTGGAAGGAAAGGGAACACCGTCGGAGAGCAAGCCACCCACCG 757
consensus_6104#1 AAAAGACGAAAAAGGGGGTGGAAGGAAAGGGAAAACCGTCGGAGAGCAAGCCACCCACCG 687
consensus_6104#2 ------------------------------------------------------------
consensus_6104#0 TGGGGGAGGGTGGAGTGGTAAAGAAAAAGAGCAGAAAGCGCATCAAGCTGCCGAAACACG 817
consensus_6104#1 TGGGGGAGGGTGGAGTGGTAAAGAAAAAGAGCAGAAAGCGCATCAAGCTGCCGAAACACG 747
consensus_6104#2 ------------------------------------------------------------
consensus_6104#0 TCATCGAGCATCTGAAAGCCGGCAACGGTGGGTGGTGCTGGGGCGTCATAAATGTAAGCA 877
consensus_6104#1 TCATCGAGCATCTGAAAGCCCGCAACGGTGG-TGGTGCTGGGGCGTCATAAATGTAAGCA 806
consensus_6104#2 ------------------------------------------------------------
consensus_6104#0 AAAACTGTAAAATAAAATTCGGCAATTAAAGCTCATTGAAAAAAAAAAAAAAAAAAAAAA 937
consensus_6104#1 AAAACTGTAAAATAAAATTCGGCAATTAAAAATCAAAAACCCCCCCCCCCCCCCCC---- 862
consensus_6104#2 ------------------------------------------------------------
consensus_6104#0 AAAGGCCAAATGTTCC 953
consensus_6104#1 ----------------
consensus_6104#2 ----------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||