cluster # 6127

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Anopheles gambiae
cluster # 6127 cluster # 6127 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6127#0 length = 769 sequences # 4

consensus_6127#1 length = 247 sequences # 1

consensusID : consensus_6127#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 769
fasta sequence

                              [CCGCCCACGCGTCCGCCCACGCGTCCGCGGATCGGAGATTTTTGCGATTTACCCCTTTGTTTTTGTTTTGCTTTGGCCAGAGGTTTTCCACTCCCAATTCCCTCAGTCCCTGCTCCACGTGTGTCTCATTCGAGGGACTGTGTGTGTGTGTGTGTTTGTGTATGTGTGTCGGGACA--AGTGAGTGTGTGGTGTGTCTCCCTGAGGACGACCCTTTGAATCCGACCCGTTTTCCGGTGTGATCTTCGCTGCGCTCCACTATAAACCATCCTCCACAGCAACCTATAACCCGACAACACACCGTTGGCTGGTCTTGCAGAAATACTGCCCCTCCGCACCATCACCATGAACATGCTCCAGGACGACAACATCGACAATGCAATCTCCGTGTTTCGGAGCGACAGGCAGTTCATCGATAATTCAAACTCCGGCATACCGCCCCGCCCGCCAAGAAGCAGCCCCGAAGACACCAGCCCCGCCAGCGACCGTCAAACCGCAGCACCGAACGCGGGCGTCAAGAT-GTACAACCTGGTGATCCTCATCATCGACATTGTCGCCATGTTGGTACGATGGATCTATCACACGCTCGAGTCGTTCTACCGGCTGGTGGTGCCGCCGGCCGCCGACACCGTCCACACCGATATCGTGCTGATTACCGGTGCCGGGCACGGGCATGGGCCGCTGCATGGGCGCTGCAGTACGCGCAGCTCGGCGCCACCGTCGTCTGCGTCGACATCAACGAGAAGATGAACGCGGACACGGTCGCCACCAT]

[+] EMBL BM615215             [CCGCCCACGCGTCCGCCCACGCGTCCGCGGATCGGAGATTTTTGCGATTTACCCCTTTGTTTTTGTTTTGCTTTGGCCAGAGGTTTTCCACTCCCAATTCCCTCAGTCCCTGCTCCACGTGTGTCTCATTCGAGGGACTGTGTGTGTGTGTGTGTTTGTGTATGTGTGTCGGGACA  AGTGAGTGTGTGGTGTGTCTCCCTGAGGACGACCCTTTGAATCCGACCCGTTTTCCGGTGTGATCTTCGCTGCGCTCCACTATAAACCATCCTCCACAGCAACCTATAACCCGACAACACACCGTTGGCTGGTCTTGCAGAAATACTGCCCCTCCGCACCATCACCATGAACATGCTCCAGGACGACAACATCGACAATGCAATCTCCGTGTTTCGGAGCGACAGGCAGTTCATCGATAATTCAAACTCCGGCATACCGCCCCGCCCGCCAAGAAGCAGCCCCGAAGACACCAGCCCCGCCAGCGACCGTCAAACCGCAGCACCGAACGCGGGCGTCAAGAT GTACAACCTGGTGATCCTCATCATCGACATTGTCGCCATGTTGGTACGATGGATCTATCACACGCTCGAGTCGTTCTACCGGCTGGTGGTGCCGCCGGCCGCCGACACCGTCCACACCGATATCGTGCTGATTACCGGTGCCGGGCACGGGCATGGGCCGCTGCATGGGCGCTGCAGTACGCGCAGCTCGGC                                                           ]
[+] EMBL BM657620             [                      ccggaCGGATCGGAGATTTTTGCGATTTACCCCTTTGTTTTTGTTTTGCTTTGGCCAGAGGTTTTCCACTCCCAATTCCCTCAGTCCCTGCTCCACGTGTGTCTCATTCGAGGGACTGTGTGTGTGTGTGTGTTTGTGTATGTGTGTCGGGACA  AGTGAGTGTGTGGTGTGTCTCCCTGAGGACGACCCTTTGAATCCGACCCGTTTTCCGGTGTGATCTTCGCTGCGCTCCACTATAAACCATCCTCCACAGCAACCTATAACCCGACAACACACCGTTGGCTGGTCTTGCAGAAATACTGCCCCTCCGCACCATCACCATGAACATGCTCCAGGACGACAACATCGACAATGCAATCTCCGTGTTTCGGAGCGACAGGCAGTTCATCGATAATTCAAACTCCGGCATACCGCCCCGCCCGCCAAGAAGCAGCCCCGAAGACACCAGCCCCGCCAGCGACCGTCAAACCGCAGCACCGAACGCGGGCGTCAAGAT GTACAACCTGGTGATCCTCATCATCGACATTGTCGCCATGTTGG                                                                                                                                                                                                               ]
[+] EMBL BX602699             [                                                    CCCTTTGGTTTTGTTTTGCTTTGGCCAGAGGTTTTCCACTCCCAATTCCCTCAGTCCCTGCTCCACGTGTGTCTCATTCGAGGGACTGTGTGTGTGTGTGTGTTTGTGTATGTGTGTCGGAACA  AGTGAGTGTGTGGCGTGTCTCCCTGCGGACGACCCTTTGAATCCGACCCGTTTTCCGGTGTGATCTTCGCTGCGCTCCACTATAAACCATCCTCCACAGCAACCTATAATCCGACAACACACCGTTGGCTGGTCTTGCAGAAATACTGCCCCTCCGCACCATCACCATGAACATGCTCCAGGACGACAACATCGACAATGCAATCTCCGTGTTTCGGAGCGACAGGCAGTTCATCGATAATTCAAACTCCGGCATACCGCCCCGCCCGCCAAGAAGCAGCCCCGAAGACACCAGCCCCGCCAGCGACCGTCAAACCGCAGCACCGAACGCGGGCGTCAAGAT GTACAACCTGGTGATCCTCATCATCGACATTGTCGCCATGTTGGTACGATGGAT                                                                                                                                                                                                     ]
[+] EMBL AGA283144            [                                                                                          CTCCCAATTCCCTCAGTCCCTGCTCCACGTGTGTCTCATTCGAGGGAC  TGTGTGTGTGTGTGTTTGTGTATGTGTGTCGGAACAAGAGTGTGTGTGTGGCGTGTCTCCCTGAGGACGACCCTTTGAATCCGACCCGTTTTCCGGTGTGATCTTCGCTGCGCTCCACTATAAACCATCCTCCACAGCAACCTATAATCCGACAACACACCGTTGGCTGGTCTTGCAGAAATACTGCCCCTCCGCACCATCACCATGAACATGCTCCAGGACGACAACATCGACAATGCAATCTCCGTGTTTCGGAGCGACAGGCAGTTCATCGATAATTCAAACTCCGGCATACCGCCCCGCCCGCCAAGAAGCAGCCCCGAAGACACCAGCCCCGCCAGCGACCGTCAAACCGCAGCACCGAACGCGGGCGTCAAGATGGTACAATCTGGTGATCCTCATCATCGACATTGTCGCCATGTTGGTACGATGGATCTATCACACGCTCGAGTCGTTCTACCGGCTGGTGGTGCCGCCGGCCGCCGACACCGTCCACACCGATATCGTGCTGATTACCGGTGCCGGGCAC GGCATGGGCCGCTGCAT GGCGCTGCAGTACGCGCAGCTCGGCGCCACCGTCGTCTGCGTCGACATCAACGAGAAGATGAACGCGGACACGGTCGCCACCAT]




>consensus_6127#0
CCGCCCACGCGTCCGCCCACGCGTCCGCGGATCGGAGATTTTTGCGATTTACCCCTTTGT
TTTTGTTTTGCTTTGGCCAGAGGTTTTCCACTCCCAATTCCCTCAGTCCCTGCTCCACGT
GTGTCTCATTCGAGGGACTGTGTGTGTGTGTGTGTTTGTGTATGTGTGTCGGGACAAGTG
AGTGTGTGGTGTGTCTCCCTGAGGACGACCCTTTGAATCCGACCCGTTTTCCGGTGTGAT
CTTCGCTGCGCTCCACTATAAACCATCCTCCACAGCAACCTATAACCCGACAACACACCG
TTGGCTGGTCTTGCAGAAATACTGCCCCTCCGCACCATCACCATGAACATGCTCCAGGAC
GACAACATCGACAATGCAATCTCCGTGTTTCGGAGCGACAGGCAGTTCATCGATAATTCA
AACTCCGGCATACCGCCCCGCCCGCCAAGAAGCAGCCCCGAAGACACCAGCCCCGCCAGC
GACCGTCAAACCGCAGCACCGAACGCGGGCGTCAAGATGTACAACCTGGTGATCCTCATC
ATCGACATTGTCGCCATGTTGGTACGATGGATCTATCACACGCTCGAGTCGTTCTACCGG
CTGGTGGTGCCGCCGGCCGCCGACACCGTCCACACCGATATCGTGCTGATTACCGGTGCC
GGGCACGGGCATGGGCCGCTGCATGGGCGCTGCAGTACGCGCAGCTCGGCGCCACCGTCG
TCTGCGTCGACATCAACGAGAAGATGAACGCGGACACGGTCGCCACCAT

consensusID : consensus_6127#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 247
fasta sequence

                              [GGCAACGAATCGGCCACGAGGTNNATCTATCACACGCTCGAGTNGCTTCTACCGGGCTGGTGGTGCCGCCGGCCGCCGACACCGTTCACACCGATATNGTGCTGATTACCGGGTGCCGGGCACGGCAATGGTGCCGCTGGCATGGCGCCTGCAGTACGCGCAGACGTCGGCGCCACCGGTACGTCTGCGTCGACAATCAAACGAGAAGAGTGAAACGGCGGACACGAGTCGTGCACCATTCGGCAGG]

[+] EMBL BX469583             [GGCAACGAATCGGCCACGAGGTNNATCTATCACACGCTCGAGTNGCTTCTACCGGGCTGGTGGTGCCGCCGGCCGCCGACACCGTTCACACCGATATNGTGCTGATTACCGGGTGCCGGGCACGGCAATGGTGCCGCTGGCATGGCGCCTGCAGTACGCGCAGACGTCGGCGCCACCGGTACGTCTGCGTCGACAATCAAACGAGAAGAGTGAAACGGCGGACACGAGTCGTGCACCATTCGGCAGG]




>consensus_6127#1
GGCAACGAATCGGCCACGAGGTNNATCTATCACACGCTCGAGTNGCTTCTACCGGGCTGG
TGGTGCCGCCGGCCGCCGACACCGTTCACACCGATATNGTGCTGATTACCGGGTGCCGGG
CACGGCAATGGTGCCGCTGGCATGGCGCCTGCAGTACGCGCAGACGTCGGCGCCACCGGT
ACGTCTGCGTCGACAATCAAACGAGAAGAGTGAAACGGCGGACACGAGTCGTGCACCATT
CGGCAGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6127#0      CCGCCCACGCGTCCGCCCACGCGTCCGCGGATCGGAGATTTTTGCGATTTACCCCTTTGT 60
consensus_6127#1      ------------------------------------------------------------
                                                                                  

consensus_6127#0      TTTTGTTTTGCTTTGGCCAGAGGTTTTCCACTCCCAATTCCCTCAGTCCCTGCTCCACGT 120
consensus_6127#1      ------------------------------------------------------------
                                                                                  

consensus_6127#0      GTGTCTCATTCGAGGGACTGTGTGTGTGTGTGTGTTTGTGTATGTGTGTCGGGACAAGTG 180
consensus_6127#1      ------------------------------------------------------------
                                                                                  

consensus_6127#0      AGTGTGTGGTGTGTCTCCCTGAGGACGACCCTTTGAATCCGACCCGTTTTCCGGTGTGAT 240
consensus_6127#1      ------------------------------------------------------------
                                                                                  

consensus_6127#0      CTTCGCTGCGCTCCACTATAAACCATCCTCCACAGCAACCTATAACCCGACAACACACCG 300
consensus_6127#1      ------------------------------------------------------------
                                                                                  

consensus_6127#0      TTGGCTGGTCTTGCAGAAATACTGCCCCTCCGCACCATCACCATGAACATGCTCCAGGAC 360
consensus_6127#1      ------------------------------------------------------------
                                                                                  

consensus_6127#0      GACAACATCGACAATGCAATCTCCGTGTTTCGGAGCGACAGGCAGTTCATCGATAATTCA 420
consensus_6127#1      ------------------------------------------------------------
                                                                                  

consensus_6127#0      AACTCCGGCATACCGCCCCGCCCGCCAAGAAGCAGCCCCGAAGACACCAGCCCCGCCAGC 480
consensus_6127#1      ------------------------------------------------------------
                                                                                  

consensus_6127#0      GACCGTCAAACCGCAGCACCGAACGCGGGCGTCAAGATGTACAACCTGGTGATCCTCATC 540
consensus_6127#1      ------------------------------------------------------------
                                                                                  

consensus_6127#0      ATCGACATTGTCGCCATGTTGGTACGATGGATCTATCACACGCTCGAGTCG-TTCTACCG 599
consensus_6127#1      ------GGCAACGAATCGGCCACGAGGTNNATCTATCACACGCTCGAGTNGCTTCTACCG 54
                                 **    *       * *  ******************* * ********

consensus_6127#0      G-CTGGTGGTGCCGCCGGCCGCCGACACCGTCCACACCGATATCGTGCTGATTACCGG-T 657
consensus_6127#1      GGCTGGTGGTGCCGCCGGCCGCCGACACCGTTCACACCGATATNGTGCTGATTACCGGGT 114
                      * ***************************** *********** ************** *

consensus_6127#0      GCCGGGCACGGGCATGG-GCCGCTG-CATGGGCGCTGCAGTACGCGCAGC--TCGGCGCC 713
consensus_6127#1      GCCGGGCACGGCAATGGTGCCGCTGGCATGGCGCCTGCAGTACGCGCAGACGTCGGCGCC 174
                      ***********  **** ******* *****   ***************   ********

consensus_6127#0      ACCGT--CGTCTGCGTCGACATC--AACGAGAAGA-TGAAC--GCGGACACG-GTCGC-C 764
consensus_6127#1      ACCGGTACGTCTGCGTCGACAATCAAACGAGAAGAGTGAAACGGCGGACACGAGTCGTGC 234
                      ****   **************    ********** ****   ********* ****  *

consensus_6127#0      ACCAT-------- 769
consensus_6127#1      ACCATTCGGCAGG 247
                      *****