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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6135#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1092 fasta sequence
[CCGGCATCACGTGGTGAATGCATTCAAGTGTGCGATTGATGGACACTATGATGTATGACTGGTCTGGGTGAGTGTTCGCTCAATTTTGGATATGTTTCATCCTACTCTTTCTCTCCTTATCGGCGAGGCAGAGTAAAGCTGTTGTAATTAATACAACAACAACAACAACAACAAAAACTACAAAATGTACGAAATGCGAAGGCCACAGGATCTCATAAACGGTTTGCCGAAGCGTTACAGCGTCTATGGGAAAAGCGTCACTTAGAGAAAGGAGTCGTTCGACCTTTTAGCGCTTCCGTGGTTGTTGTGGATGTTGGAACTATCGGGGATTCGGGAAGGATAAGAAAAACTGAGCACAGTCGCCAACACGAGCGACAGAAAACTACAGCTCCATAGATATACATATATTTTGGATTGCATGTTTGTTGAGGAAGCGCTAGGCTTCATTTATTTACCGGAGCGTCTAGCAACCTTCCCTCTTCTACCGGGACATAGAGGGAACGTGGGGTGGGTAGCTGTGGATGGAGATGTACATGGGATGGTGTAGCAAAAATGGTGTAGATGGTGAAACAGAGAAGCTTAAAAAATGAACGGTGAAATGTGAAAAAGTAGTTATGCAAAGTTGGCGAAAGAACATATGAGAAACGAGGAAATGGAGAAAAGGAAGATGAATAAGAAGCAGAAGAAGCAGAAGAAGAGAAGATGAGATGTCATAAGAGAGATAATAAAAGTAACAGATGATGTGTAAGAAGAAAAGCAAGAAGAAGTAAA-AGAAGAAAAATGTAGAAGAAGAACATCAGGATGAGAAACAAAAC-AAAAAAATCTAATTACTGAGACATGGCTGTGTTTATTCCTCCTCACAATTTGTTT-TTAA-GATGCTATAGATACCA-GCAATGCGTAACGAATGTTGAACGGGAAACGAGAGTGAAATTCTGGCATAGTAGTGTGAGCGTTTCTGCGGGAAAGAANGAGTNNCGTGGTCGTTCNGTAAACATGACTCNAAAGCGGANGTGGACGGATAAAAAAAAGGAGTGGTTTANAAACNCNAAAGATANGCATNAATANT-CNNCNGCGACACNAAAAACTTCCACN]
[+] EMBL BM623981 [CCGGCATCACGTGGTGAATGCATTCAAGTGTGCGATTGATGGACACTATGATGTATGACTGGTCTGGGTGAGTGTTCGCTCAATTTTGGATATGTTTCATCCTACTCTTTCTCTCCTTATCGGCGAGGCAGAGTAAAGCTGTTGTAATTAATACAACAACAACAACAACAACAAAAACTACAAAATGTACGAAATGCGAAGGCCACAGGATCTCATAAACGGTTTGCCGAAGCGTTACAGCGTCTATGGGAAAAGCGTCACTTAGAGAAAGGAGTCGTTCGACCTTTTAGCGCTTCCGTGGTTGTTGTGGATGTTGGAACTATCGGGGATTCGGGAAGGATAAGAAAAACTGAGCACAGTCGCCAACACGAGCGACAGAAAACTACAGCTCCATAGATATACATATATTTTGGATTGCATGTTTGTTGAGGAAGCGCTAGGCTTCATTTATTTACCGGAGCGTCTAGCAACCTTCCCTCTTCTACCGGGACATAGAGGGAACGTGGGGTGGGTAGCTGTGGATGGAGATGTACATGGGATGGTGTAGCAAAAATGGTGTAGATGGTGAAACAGAGAAGCTTAAAAAATGAACGGTGAAATGTGAAAAAGTAGTTATGCAAAGTTGGCGAAAGAACATATGAGAAACGAGGAAATGGAGAAAAGGAAGA ]
[+] EMBL BM631833 [ ccgGAAATGCGAAGGCCACAGGATCTCATAAACGGTTTGCCGAAGCGTTACAGCGTCTATGGGAAAAGCGTCACTTAGAGAAAGGAGTCGTTCGACCTTTTAGCGCTTCCGTGGTTGTTGTGGATGTTGGAACTATCGGGGATTCGGGAAGGATAAGAAAAACTGAGCACAGTCGCCAACACGAGCGACAGAAAACTACAGCTCCATAGATATACATATATTTTGGATTGCATGTTTGTTGAGGAAGCGCTAGGCTTCATTTATTTACCGGAGCGTCTAGCAACCTTCCCTCTTCTACCGGGACATAGAGGGAACGTGGGGTGGGTAGCTGTGGATGGAGATGTACATGGGATGGTGTAGCAAAAATGGTGTAGATGGTGAAACAGAGAAGCTTAAAAAATGAACGGTGAAATGTGAAAAAGTAGTTATGCAAAGTTGGCGAAAGAACATATGAGAAACGAGGAAATGGAGAAAAGGAAGATGAATAAGAAGCAGAAGAAGCAGAAGAAGAGAAGATGAGATGTCATAAGAGAGATAATAAAAGTAACAGATGATGTGTAAGAAG AAATCAAGAAGAAGTAAA AGAAGAAAAATGTAGAAGAAGAACATCAGGATGAGAAACAAAAC AAAAAAATCTAATTACTGAGACATGGCTGTGTTTATTCCTCCTCACAATTTGTTT TTAA GATGCTATAGATACCA GCAATGCGTAAC ]
[+] EMBL CF542083 [ CGAGCGACAGAAAACTACAGCTCCACAGATATACATATATTTTGGATTGCATGTTTGTTGAGGAAGCGCTAGGCTTCATTTATTTACCGGAGCGTCTAGCAACCTTCCCTCTTCTACCGGGACATAGAGGGAACGTGGGGTGGGTAGCTGTGGATGGAGATGTACATGGGATGGTGTAGCAAAAATGGTGTAGATGGTGAAACAGAGAAGCTT AAAAATGAACGATGAAATGTGAAAAAGTAGTTATGCAAAGTTGGCGAAAGAACATATGAGAAACGAGGAAATGGAGAAAAGGAAGATGAATAAGAAGCAGAAGAAGCAGAAGAAGAGAAGATGAGATGTCATAAGAGAGATAATAAAAGTAACAGATGATATGTAAGAAGAAAAGCAAGAAGAAGTAAAGAGAAGAAAAATGTAGAAGAAGAACATCAGGATGAGAAACAAAACAAAAAAAATCTAATTACTGAGACATGGCTGTGTTTATTCCTCCTCACAATTTGTTTATTAANGATGCTATANATACCANGCGATGCGTAACGAATGTTGAACGGGAAACGAGAGTGAAATTCTGGCATAGTAGTGTGAGCGTTTCTGCGGGAAAGAANGAGTNNCGTGGTCGTTCNGTAAACATGACTCNAAAGCGGANGTGGACGGATAAAAAAAAGGAGTGGTTTANAAACNCNAAAGATANGCATNAATANT CNNCNGCGACACNAAAAACTTCCACN]
[+] EMBL BM640421 [ ccgCCGGGACATAGAGGGAACGTGGGGTGGGTAGCTGTGGATGGAGATGTACATGGGATGGTGTAGCAAAAATGGTGTAGATGGTGAAACAGAGAAGCTTAAAAAATGAACGGTGAAATGTGAAAAAGTTGTTATGCAAAGTTGGCGAAAGAACATATGAGAAACGAGGAAATGGAGAAAAGGAAGATGAATAAGAAGCAGAAGAAGCAGAAGAAGAGAAGATGAGATGTCATAAGAGAGATAATAAAAGTAACAGATGATGTGTAAGAAGAAAAGCAAGAAGAAGTAAA AGAAGAAAAATGTAGAAGAAGAACATCAGGATGAGAAACAAAAC AAAAAAATCTAATTACTGAGACATGGCTGTGTTTATTCCTCCTCACAATTTGTTT TTAA GATGCTATAGATACCA GCAATGCGTAATGAATGTTGAACGGAAAACGAGAGTGAAATTCTGGCTTAGTAGTGTGAGCGTTTCTGCGGGAAAGAAGGAGTTTCGTGGTCGTTCGGTAGACATGAATCGAAAGCGGAAATGGACGGAT AAGAAAAGGAGTGGTTTAAAAACGCAGAAGATAAGCATTAATAATACAACTGCGACACgaga ]
consensusID : consensus_6135#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 667 fasta sequence
[CCGCGGACGCGTGGGTGGAACTATCGGGGATTCGGGAAGGATACGAAAAACTGAGCACAGTCGCCAACACGAGCGACAGAAAACTACAGATCAATAGATATACATATATTTTGGATTGCATGTTTGTTGAGGAAGCGCTAGGCTTAATTTATTTACCGGAGCGTCCAGCAACCTTCCCTCTTCTACCGGGACATAGAGGGAACGTGGGGTGGGTAGCTATGGATGGAGATGTACATGGGATGGTGTAGCAAAAATGGTGTAGATGGTGAAACAGAGAAGCTTAAAAAATGAACGGTGAAATGTGAAAAAGTTGTTATGCAAAGTTGGCGAAAGAACATATGAGAAACGAGGAAATGGAGAAAAGGAAGATGAATAAGAAGCAGAAGAAGCAGAAGAAGAGAAGATGAGATGTCATAAGAGAGATAATAAAAGTAACAGATGATGTGTAAGAAGAAAAGCAAGAAGAAGTAAAAGAAGAAAAATGTAGAAGAAGAACATCAGGATGAGAAACAAAACAAAAAAATCTAATTACTGAGACATGGCTGTGTTTATTCCTCCTCACAATTTGTTTTTAAGATGCTATAGATACCAGCAATGCGTAACGAATGTTGAACGGAAAACGAGAGTGAAATTCTGGCTAAGTAGTGTGAGCGTTTCTGCGGGAAAG]
[+] EMBL BM597161 [CCGCGGACGCGTGGGTGGAACTATCGGGGATTCGGGAAGGATACGAAAAACTGAGCACAGTCGCCAACACGAGCGACAGAAAACTACAGATCAATAGATATACATATATTTTGGATTGCATGTTTGTTGAGGAAGCGCTAGGCTTAATTTATTTACCGGAGCGTCCAGCAACCTTCCCTCTTCTACCGGGACATAGAGGGAACGTGGGGTGGGTAGCTATGGATGGAGATGTACATGGGATGGTGTAGCAAAAATGGTGTAGATGGTGAAACAGAGAAGCTTAAAAAATGAACGGTGAAATGTGAAAAAGTTGTTATGCAAAGTTGGCGAAAGAACATATGAGAAACGAGGAAATGGAGAAAAGGAAGATGAATAAGAAGCAGAAGAAGCAGAAGAAGAGAAGATGAGATGTCATAAGAGAGATAATAAAAGTAACAGATGATGTGTAAGAAGAAAAGCAAGAAGAAGTAAAAGAAGAAAAATGTAGAAGAAGAACATCAGGATGAGAAACAAAACAAAAAAATCTAATTACTGAGACATGGCTGTGTTTATTCCTCCTCACAATTTGTTTTTAAGATGCTATAGATACCAGCAATGCGTAACGAATGTTGAACGGAAAACGAGAGTGAAATTCTGGCTAAGTAGTGTGAGCGTTTCTGCGGGAAAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6135#0 CCGGCATCACGTGGTGAATGCATTCAAGTGTGCGATTGATGGACACTATGATGTATGACT 60
consensus_6135#1 ------------------------------------------------------------
consensus_6135#0 GGTCTGGGTGAGTGTTCGCTCAATTTTGGATATGTTTCATCCTACTCTTTCTCTCCTTAT 120
consensus_6135#1 ------------------------------------------------------------
consensus_6135#0 CGGCGAGGCAGAGTAAAGCTGTTGTAATTAATACAACAACAACAACAACAACAAAAACTA 180
consensus_6135#1 ------------------------------------------------------------
consensus_6135#0 CAAAATGTACGAAATGCGAAGGCCACAGGATCTCATAAACGGTTTGCCGAAGCGTTACAG 240
consensus_6135#1 ------------------------------------------------------------
consensus_6135#0 CGTCTATGGGAAAAGCGTCACTTAGAGAAAGGAGTCGTTCGACCTTTTAGCGCTTCCGTG 300
consensus_6135#1 -------------------------------------------------------CCGCG 5
*** *
consensus_6135#0 GTTGTTGTGGATGTTGGAACTATCGGGGATTCGGGAAGGATAAGAAAAACTGAGCACAGT 360
consensus_6135#1 GACGC-GTGGGT---GGAACTATCGGGGATTCGGGAAGGATACGAAAAACTGAGCACAGT 61
* * **** * *************************** *****************
consensus_6135#0 CGCCAACACGAGCGACAGAAAACTACAGCTCCATAGATATACATATATTTTGGATTGCAT 420
consensus_6135#1 CGCCAACACGAGCGACAGAAAACTACAGATCAATAGATATACATATATTTTGGATTGCAT 121
**************************** ** ****************************
consensus_6135#0 GTTTGTTGAGGAAGCGCTAGGCTTCATTTATTTACCGGAGCGTCTAGCAACCTTCCCTCT 480
consensus_6135#1 GTTTGTTGAGGAAGCGCTAGGCTTAATTTATTTACCGGAGCGTCCAGCAACCTTCCCTCT 181
************************ ******************* ***************
consensus_6135#0 TCTACCGGGACATAGAGGGAACGTGGGGTGGGTAGCTGTGGATGGAGATGTACATGGGAT 540
consensus_6135#1 TCTACCGGGACATAGAGGGAACGTGGGGTGGGTAGCTATGGATGGAGATGTACATGGGAT 241
************************************* **********************
consensus_6135#0 GGTGTAGCAAAAATGGTGTAGATGGTGAAACAGAGAAGCTTAAAAAATGAACGGTGAAAT 600
consensus_6135#1 GGTGTAGCAAAAATGGTGTAGATGGTGAAACAGAGAAGCTTAAAAAATGAACGGTGAAAT 301
************************************************************
consensus_6135#0 GTGAAAAAGTAGTTATGCAAAGTTGGCGAAAGAACATATGAGAAACGAGGAAATGGAGAA 660
consensus_6135#1 GTGAAAAAGTTGTTATGCAAAGTTGGCGAAAGAACATATGAGAAACGAGGAAATGGAGAA 361
********** *************************************************
consensus_6135#0 AAGGAAGATGAATAAGAAGCAGAAGAAGCAGAAGAAGAGAAGATGAGATGTCATAAGAGA 720
consensus_6135#1 AAGGAAGATGAATAAGAAGCAGAAGAAGCAGAAGAAGAGAAGATGAGATGTCATAAGAGA 421
************************************************************
consensus_6135#0 GATAATAAAAGTAACAGATGATGTGTAAGAAGAAAAGCAAGAAGAAGTAAAAGAAGAAAA 780
consensus_6135#1 GATAATAAAAGTAACAGATGATGTGTAAGAAGAAAAGCAAGAAGAAGTAAAAGAAGAAAA 481
************************************************************
consensus_6135#0 ATGTAGAAGAAGAACATCAGGATGAGAAACAAAACAAAAAAATCTAATTACTGAGACATG 840
consensus_6135#1 ATGTAGAAGAAGAACATCAGGATGAGAAACAAAACAAAAAAATCTAATTACTGAGACATG 541
************************************************************
consensus_6135#0 GCTGTGTTTATTCCTCCTCACAATTTGTTTTTAAGATGCTATAGATACCAGCAATGCGTA 900
consensus_6135#1 GCTGTGTTTATTCCTCCTCACAATTTGTTTTTAAGATGCTATAGATACCAGCAATGCGTA 601
************************************************************
consensus_6135#0 ACGAATGTTGAACGGGAAACGAGAGTGAAATTCTGGCATAGTAGTGTGAGCGTTTCTGCG 960
consensus_6135#1 ACGAATGTTGAACGGAAAACGAGAGTGAAATTCTGGCTAAGTAGTGTGAGCGTTTCTGCG 661
*************** ********************* *********************
consensus_6135#0 GGAAAGAANGAGTNNCGTGGTCGTTCNGTAAACATGACTCNAAAGCGGANGTGGACGGAT 1020
consensus_6135#1 GGAAAG------------------------------------------------------ 667
******
consensus_6135#0 AAAAAAAAGGAGTGGTTTANAAACNCNAAAGATANGCATNAATANTCNNCNGCGACACNA 1080
consensus_6135#1 ------------------------------------------------------------
consensus_6135#0 AAAACTTCCACN 1092
consensus_6135#1 ------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||