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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6153#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1441 fasta sequence
[AAGAATTCTTNTNGGACGGCCCTCGAGACGGTGCAGCAGATGTTCTCCATTTGGCGCGAGGTATACGAGGTGCAGCTCGCGAACGCTGCCAACGAGCACGACAATGAGAAGCATTCGGACACGAGGAGCGTCATACAGATGCAATCGTCTCAAATGTCTGACAAAGATTCAAATTCAATTCACGCAGCATCGTTGGCGGCATCACGCATTGAGCACGCGCTTAGCGAAGCGGCCCAGCTCTCTTAGCTCGTTCAGTCCCCGACCSGGGCCACAGAAGGCTTGGATGATTCAGTTCAAAATTTGGCTTCTGCTAGCGGACGTATATCTAGCGATTGAACAGCCAAACGAAGCGATCAACTGCATCCAGGAGGCAAGCCTCATCAATCCTGTTTCGCATCAGGTTATGTACATGCGAGGCCAAATTCACATCTTCCAATCCCAATGGAATGAAGCAAAGCAATGCTTTCTTAACGCCGTCTCAGCGAACCCGTACCATACGGACGCGTTGCGAGCGCTCGGTGAAGCACACCTAACGCTGGGAGAACCCCGGCTGGCCGAAAAGACGCTGAAGGACGCGGCCAAAATTGATCCAAACTGTCCCAAAATATGGTTCCTGCTGGGACGTGTGATGGAAAGTCTAGGAGATTACACGGCTTCGGCTGATTGCATGGCAACGGCACTACAGCTCGAACCGTACTGCCCGGTGTTGCCATTTAATGCGATCGGTCTCGTTTTCGACTAAACCTCAGTAAAGTTAATCTGTGTGAAGATTTTACCCTGCTCAAAGCAGCTCACTCAACACCACCAGACCGCGGACACAATTGTTCCGTGGAACGAATGTTCATCACCCGTATCTATTTGACTATTCTTATTGACCGTTGACTAATTTTAGGATCCAGATAATCAAACCAGTGCTATGCTCACGCTCCTCCCCTACCGTTTCCACCCTGGTGTGCGTGCATAATTCATATCAGTTTTAGCAAACCCCTAAAGGTGTCGGTCTATTTTAGAGCAAAAGTATTATGCCACAATGTATGTGTGTCATTATTGGGTAGCGGGATAGTAGAGGTTCACTCCCTTGGGTGCATTTCAACCTTCTAGTTATTAGTGTGATGTTTCGTTACATATGTACGATAATGCACTCAAATCACAATCTCTTCCCACTTCCCCCCAGATAGTTTTGTTTTATCACACTGTGATTGTATCGTTATTCATAAGTTTAAATGTTTTGTTTACAACGGACACGTCTTTGAGACGAGTTATGTATTGTAGAGACCTTTGGTGGTATTCAGTATGCAGACATGTATAAACAGAACTGGTGGTATTTTCTCTTCAACAAGCTCGGGATCATCATCATGATGTATTATCAATTGCAACGTTTAAGGAAATGGAAACCAAATATATACAATAAAGTTCGGACAATGGTTAAATGAAAAAAAAA]
[+] EMBL AGA282926 [AAGAATTCTTNTNGGACGGCCCTCGAGACGGTGCAGCAGATGTTCTCCATTTGGCGCGAGGTATACGAGGTGCAGCTCGCGAACGCTGCCAACGAGCACGACAATGAGAAGCATTCGGACACGAGGAGCGTCATACAGATGCAATCGTCTCAAATGTCTGACAAAGATTCAAATTCAATTCACGCAGCATCGTTGGCGGCATCACGCATTGAGCACGCGCTTAGCGAAGCGGCCCAGCTCTCTTAGCTCGTTCAGTCCCCGACCSGGGCCACAGAAGGCTTGGATGATTCAGTTCAAAATTTGGCTTCTGCTAGCGGACGTATATCTAGCGATTGAACAGCCAAACGAAGCGATCAACTGCATCCAGGAGGCAAGCCTCATCAATCCTGTTTCGCATCAGGTTATGTACATGCGAGGCCAAATTCACATCTTCCAATCCCAATGGAATGAAGCAAAGCAATGCTTTCTTAACGCCGTCTCAGCGAACCCGT ]
[+] EMBL BX612587 [ TCACATCTTCCAATCCCAATGGAATGAAGCAAAGCAATGCTTTCTTAACGCCGTCTCAGCGAACCCGTACCATACGGACGCGTTGCGAGCGCTCGGTGAAGCACACCTAACGCTGGGAGAACCCCGGCTGGCCGAAAAGACGCTGAAGGACGCGGCCAAAATTGATCCAAACTGTCCCAAAATATGGTTCCTGCTGGGACGTGTGATGGAAAGTCTAGGAGATTACACGGCTTCGGCTGATTGCATGGCAACGGCACTACAGCTCGAACCGTACTGCCCGGTGTTGCCATTTAATGCGATCGGTCTCGTTTTCGACTAAACCTCAGTAAAGTTAATCTGTGTGAAGATTTTACCCTGCTCAAAGCAGCTCACTCAACACCACCAGACCGCGGACACAATTGTTCCGTGGAACGAATGTTCATCACCCGTATCTATTTGACTATTCTTATTGACCGTTGACTAATTTTAGGATCCAGATAATCAAACCAGTGCTATGCTCACGCTCCTCCCCTACCGTTTCCACCCTGGTGTGCGTGCATAATTCATATCAGTTTTAGCAAACCCCTAAAGGTGTCGGTCTATTTTAGAGCAAAAGTATTATGCCACAATGTATGTGTGTCATTATTGGGTAGCGGGATAGTAGAGGTTCACTCCCTTGGGTGCATTTCAACCTT ]
[+] EMBL BX617528 [ CATCACCCGTATCTATTTGACTATTCTTATTGACCGTTGACTAATTTTAGGATCCAGATAATCAAACCAGTGCTATGCTCACGCTCATCTCCTACCGTATTCACTCTGGTGTGCGTGCATAATTCATATCAGTTTTAGCAAACCCCGAAAGGTGTCGGTCTATTTTAGAGCAAAAGTATTATGCCACAATG TCTGTGTCATTATTGGGTAGCGGAATAGTAGAGGTTCACTCCCTTGGATGCATTTCAACCTTCTAGTTATTAGTGTGATGTTTCGTTACATATGTACGATAATGCACTCAAATCACAATCTCTTCCCACTTCCCCCCAGATAGTTTTGTTTTATCACACTGTGATTGTATCGTTATTCATAAGTTTAAATGTTTTGTTTACAACGGACACGTCTTTGAGACGAGTTATGTATTGTAGAGACCTTTGGTGGTATTCAGTATGCAGACATGTATAAACAGAACTGGTGGTATTTTCTCTTCAACAAGCTCGGGATCATCATCATGATGTATTATCAATTGCAACGTTTAAGGAAATGGAAACCAAATATATACAATAAAGTTCG ]
[-] EMBL AGA281313 [ CCGTTTCCA CCTGGTGTGCGTGCATAATTCATATCAGTTTTAGCAAACCCCTAAAGGTGTCGGTCTATTTTAGAGCAAAAGTATTATGCCACAATGTATGTGTGTCATTATTGGGTAGCGGGATAGTAGAGGTTCACTCCCTTGGGTGCATTTCAACCTTCTAGTTATTAGTGTGATGTTTCGTTACATATGTAGGATAAGGCACTCCAATCCCAATCTCTTCCCACTTCCCCCCAGATAGTTTTGTTTTATCACACTGTGATTGTATCGTTATTCATAAGTTTAAATGTTTTGTTTACAACGGACACGTCTTAGAGACGATTTATGTATCGTAGAGACCGTTGGTGGTAGTCAGTATGCGGACATGTATAAACAGAACTGGTGTTATTCTCTCTTTAACAAGCTCGGGTTCATCATCACGATGTATTATCAATTGCAACGTTTAAGGAAATGGAAACCAAATATATACAATAAAGTTCGGACAATGGTTAAATGAAAAAAAAA]
consensusID : consensus_6153#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 391 fasta sequence
[AGAATCGCCANGAGNTGAAATGAAGCAAAGCAATGCTTTCTTAACGCCGTCTCAGCGAACCCGTACCATACGGACGCGTTGCGAGCGCTCGGTGAAGCACACCTAACGCTGGGAGAACCCCGGCTGGCCGAAAAGACGCTGAAGGACGCGGCCAAAATTGATCCAAACTGTCCCAAAATATGGTTCCTGCTGGGACGTGTGATGGAAAGTCTAGGAGATTACACGGCTTCGGCTGATTGCATGGCAACGGCACTACAGCTCGAACCGTACTGCCCGGTGTTGCCATTTAATGCGATCGGTCTCGTTTTCGACTAAACCTCAGTAAAGTTAATCTGTGTGAAGCATTTTACCCTGCGTCAAAGCAGGCTCACTCAAGCACCACCAGACCGCG]
[+] EMBL BX466172 [AGAATCGCCANGAGNTGAAATGAAGCAAAGCAATGCTTTCTTAACGCCGTCTCAGCGAACCCGTACCATACGGACGCGTTGCGAGCGCTCGGTGAAGCACACCTAACGCTGGGAGAACCCCGGCTGGCCGAAAAGACGCTGAAGGACGCGGCCAAAATTGATCCAAACTGTCCCAAAATATGGTTCCTGCTGGGACGTGTGATGGAAAGTCTAGGAGATTACACGGCTTCGGCTGATTGCATGGCAACGGCACTACAGCTCGAACCGTACTGCCCGGTGTTGCCATTTAATGCGATCGGTCTCGTTTTCGACTAAACCTCAGTAAAGTTAATCTGTGTGAAGCATTTTACCCTGCGTCAAAGCAGGCTCACTCAAGCACCACCAGACCGCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6153#0 AAGAATTCTTNTNGGACGGCCCTCGAGACGGTGCAGCAGATGTTCTCCATTTGGCGCGAG 60
consensus_6153#1 ------------------------------------------------------------
consensus_6153#0 GTATACGAGGTGCAGCTCGCGAACGCTGCCAACGAGCACGACAATGAGAAGCATTCGGAC 120
consensus_6153#1 ------------------------------------------------------------
consensus_6153#0 ACGAGGAGCGTCATACAGATGCAATCGTCTCAAATGTCTGACAAAGATTCAAATTCAATT 180
consensus_6153#1 ------------------------------------------------------------
consensus_6153#0 CACGCAGCATCGTTGGCGGCATCACGCATTGAGCACGCGCTTAGCGAAGCGGCCCAGCTC 240
consensus_6153#1 ------------------------------------------------------------
consensus_6153#0 TCTTAGCTCGTTCAGTCCCCGACCSGGGCCACAGAAGGCTTGGATGATTCAGTTCAAAAT 300
consensus_6153#1 ------------------------------------------------------------
consensus_6153#0 TTGGCTTCTGCTAGCGGACGTATATCTAGCGATTGAACAGCCAAACGAAGCGATCAACTG 360
consensus_6153#1 ------------------------------------------------------------
consensus_6153#0 CATCCAGGAGGCAAGCCTCATCAATCCTGTTTCGCATCAGGTTATGTACATGCGAGGCCA 420
consensus_6153#1 ------------------------------------------------------------
consensus_6153#0 AATTCACATCTTCCAATCCCAATGGAATGAAGCAAAGCAATGCTTTCTTAACGCCGTCTC 480
consensus_6153#1 -----AGAATCGCCANGA--GNTGAAATGAAGCAAAGCAATGCTTTCTTAACGCCGTCTC 53
* * *** ** ***********************************
consensus_6153#0 AGCGAACCCGTACCATACGGACGCGTTGCGAGCGCTCGGTGAAGCACACCTAACGCTGGG 540
consensus_6153#1 AGCGAACCCGTACCATACGGACGCGTTGCGAGCGCTCGGTGAAGCACACCTAACGCTGGG 113
************************************************************
consensus_6153#0 AGAACCCCGGCTGGCCGAAAAGACGCTGAAGGACGCGGCCAAAATTGATCCAAACTGTCC 600
consensus_6153#1 AGAACCCCGGCTGGCCGAAAAGACGCTGAAGGACGCGGCCAAAATTGATCCAAACTGTCC 173
************************************************************
consensus_6153#0 CAAAATATGGTTCCTGCTGGGACGTGTGATGGAAAGTCTAGGAGATTACACGGCTTCGGC 660
consensus_6153#1 CAAAATATGGTTCCTGCTGGGACGTGTGATGGAAAGTCTAGGAGATTACACGGCTTCGGC 233
************************************************************
consensus_6153#0 TGATTGCATGGCAACGGCACTACAGCTCGAACCGTACTGCCCGGTGTTGCCATTTAATGC 720
consensus_6153#1 TGATTGCATGGCAACGGCACTACAGCTCGAACCGTACTGCCCGGTGTTGCCATTTAATGC 293
************************************************************
consensus_6153#0 GATCGGTCTCGTTTTCGACTAAACCTCAGTAAAGTTAATCTGTGTGAAG-ATTTTACCCT 779
consensus_6153#1 GATCGGTCTCGTTTTCGACTAAACCTCAGTAAAGTTAATCTGTGTGAAGCATTTTACCCT 353
************************************************* **********
consensus_6153#0 GC-TCAAAGCAG-CTCACTCAA-CACCACCAGACCGCGGACACAATTGTTCCGTGGAACG 836
consensus_6153#1 GCGTCAAAGCAGGCTCACTCAAGCACCACCAGACCGCG---------------------- 391
** ********* ********* ***************
consensus_6153#0 AATGTTCATCACCCGTATCTATTTGACTATTCTTATTGACCGTTGACTAATTTTAGGATC 896
consensus_6153#1 ------------------------------------------------------------
consensus_6153#0 CAGATAATCAAACCAGTGCTATGCTCACGCTCCTCCCCTACCGTTTCCACCCTGGTGTGC 956
consensus_6153#1 ------------------------------------------------------------
consensus_6153#0 GTGCATAATTCATATCAGTTTTAGCAAACCCCTAAAGGTGTCGGTCTATTTTAGAGCAAA 1016
consensus_6153#1 ------------------------------------------------------------
consensus_6153#0 AGTATTATGCCACAATGTATGTGTGTCATTATTGGGTAGCGGGATAGTAGAGGTTCACTC 1076
consensus_6153#1 ------------------------------------------------------------
consensus_6153#0 CCTTGGGTGCATTTCAACCTTCTAGTTATTAGTGTGATGTTTCGTTACATATGTACGATA 1136
consensus_6153#1 ------------------------------------------------------------
consensus_6153#0 ATGCACTCAAATCACAATCTCTTCCCACTTCCCCCCAGATAGTTTTGTTTTATCACACTG 1196
consensus_6153#1 ------------------------------------------------------------
consensus_6153#0 TGATTGTATCGTTATTCATAAGTTTAAATGTTTTGTTTACAACGGACACGTCTTTGAGAC 1256
consensus_6153#1 ------------------------------------------------------------
consensus_6153#0 GAGTTATGTATTGTAGAGACCTTTGGTGGTATTCAGTATGCAGACATGTATAAACAGAAC 1316
consensus_6153#1 ------------------------------------------------------------
consensus_6153#0 TGGTGGTATTTTCTCTTCAACAAGCTCGGGATCATCATCATGATGTATTATCAATTGCAA 1376
consensus_6153#1 ------------------------------------------------------------
consensus_6153#0 CGTTTAAGGAAATGGAAACCAAATATATACAATAAAGTTCGGACAATGGTTAAATGAAAA 1436
consensus_6153#1 ------------------------------------------------------------
consensus_6153#0 AAAAA 1441
consensus_6153#1 -----
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||