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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6167#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 729 fasta sequence
[CCCGAGGTTANGCGATACACGATCCACCAAAACCAGCGTATATCTGGCACACATTGCGCAGCTACCGGGAGCAAGTCGCTCCGATACAACCGCACCGATCGACTTTTCCGNGTCACCTCCATCAAGCAACCGCTCCAAGATGAACAATGCTACTCACCGGTGGACTACTTGTTCCTGCTCGTGGCCTGGCTCGCTCGTGTCCTGGCTCGATGTTTGGCCCTGTTCTGGACCTGTTCTGGACCGGCGCTCAGCTGCCTGGGCGCAGTCGGCGGCTATCCGGGCTGCGGTCGGAGGGTATCCGGGCGCGGTCGGCGGTTTGCCCATGTACCCTGGGCCGTCCCGGCCTTGGACATGCTGCCTGTGTACCCTGCCGTCTACCGGGCTGCACCGATGCTGCCCCTGACTGCCTGGNCATGCCGTACGCTTACGGTCTGCTGCCATGCCGGCTGATGATGCCAGTTGCGCCACCCACACTGGCAGGCAACCTGCTGCACCGTATGGCTCGAACACGACGTGCTGGGACGGTATGGTGTGGNCGACCATGGCCGAGGATTTGCAAGCAGGCGCGCCCAGGACATGCAGTGCCGCCAGCTNAGCACGCGCTTCGACGCCTGACGAACAGCATGCTGACTGACGACCGGCTCCTACTGGCAGTACAAGCGCTGGCCAATGCGCTCCAGCTGCGCACNCGGACCTGACCGCGGGGCACANGCACTCGAGCAGGAANCT]
[+] EMBL AL931872 [CCCGAGGTTANGCGATACACGATCCACCAAAACCAGCGTATATCTGGCACACATTGCGCAGCTACCGGGAGCAAGTCGCTCCGATACAACCGCACCGATCGACTTTTCCGNGTCACCTCCATCAAGCAACCGCTCCAAGATGAACAATGCTACTCACCGGTGGACTACTTGTTCCTGCTCGTGGCCTGGCTCGCTCGTGTCCTGGCTCGATGTTTGGCCCTGTTCTGGACCTGTTCTGGACCGGCGCTCAGCTGCCTGGGCGCAGTCGGCGGCTATCCGGGCTGCGGTCGGAGGGTATCCGGGCGCGGTCGGCGGTTTGCCCATGTACCCTGGGCCGTCCCGGCCTTGGACATGCTGCCTGTGTACCCTGCCGTCTACCGGGCTGCACCGATGCTGCCCCTGACTGCCTGGNCATGCCGTACGCTTACGGTCTGCTGCCATGCCGGCTGATGATGCCAGTTGCGCCACCCACACTGGCAGGCAACCTGCTGCACCGTATGGCTCGAACACGACGTGCTGGGACGGTATGGTGTGGNCGACCATGGCCGAGGATTTGCAAGCAGGCGCGCCCAGGACATGCAGTGCCGCCAGCTNAGCACGCGCTTCGACGCCTGACGAACAGCATGCTGACTGACGACCGGCTCCTACTGGCAGTACAAGCGCTGGCCAATGCGCTCCAGCTGCGCACNCGGACCTGACCGCGGGGCACANGCACTCGAGCAGGAANCT]
consensusID : consensus_6167#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 663 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGCATCTTTGATGTGCTAGTGGACACATTTCGTTGTGAACCCAAATAAAAATCGCTATGGTGTTCGGTTCCAAGGTGATCAAAGCCGGCAACGGCGAACCCGATGCGTTCGAGACGCAGATCGGCCAGGCCATCCTGGAGCTGGAGATGAACTCGGATCTGAAGCCGCAGCTGCGTGATCTGTACATCACCCGCGCGCGTGAGGTCGAGTTCAACAACAAGAAGGCGATCATCATCTACGTGCCGGTGCCGAAACAGAAGGCCTTCCAGAAGGTACAGACCCGTCTGGTGCGCGAGTTGGAGAAGAAGTTCTCCGGCAAGCACGTCGTGTTCATTGCCGAGCGCCGCATTCTGCCCAAACCGATGCGTGGACGCCGCGACCCCAACAAGCAGAAGAGACCGCGTTCCCGAACGCTCACCGCCGTGTACGATGCCATCCTGGAGGATCTGGTATTCCCGGCGGAGGTGGTCGGCAAGCGTATCCGCGTCAAGCTCGACGGATCCCAGCTGATAAAGGTGCACCTGGATAAGAACCAGCAGACCACCATCGAACACAAAGTTGACACTTTTGCGTCGGTGTACAAGAAGCTGACTGGCCGTGACGTTACGTTCGAATTCCCAGAGAACTACCTGTAAAAT]
[+] EMBL BM608374 [CCGCCCACGCGTCCGCCCACGCGTCCGCATCTTTGATGTGCTAGTGGACACATTTCGTTGTGAACCCAAATAAAAATCGCTATGGTGTTCGGTTCCAAGGTGATCAAAGCCGGCAACGGCGAACCCGATGCGTTCGAGACGCAGATCGGCCAGGCCATCCTGGAGCTGGAGATGAACTCGGATCTGAAGCCGCAGCTGCGTGATCTGTACATCACCCGCGCGCGTGAGGTCGAGTTCAACAACAAGAAGGCGATCATCATCTACGTGCCGGTGCCGAAACAGAAGGCCTTCCAGAAGGTACAGACCCGTCTGGTGCGCGAGTTGGAGAAGAAGTTCTCCGGCAAGCACGTCGTGTTCATTGCCGAGCGCCGCATTCTGCCCAAACCGATGCGTGGACGCCGCGACCCCAACAAGCAGAAGAGACCGCGTTCCCGAACGCTCACCGCCGTGTACGATGCCATCCTGGAGGATCTGGTATTCCCGGCGGAGGTGGTCGGCAAGCGTATCCGCGTCAAGCTCGACGGATCCCAGCTGATAAAGGTGCACCTGGATAAGAACCAGCAGACCACCATCGAACACAAAGTTGACACTTTTGCGTCGGTGTACAAGAAGCTGACTGGCCGTGACGTTACGTTCGAATTCCCAGAGAACTACCTGTAAAAT]
[+] EMBL BM653026 [CCGCCCACGCGTCCGCCCACGCGTCCG CTTTGATGTGCTAGTGGACACATTTCGTTGTGAACCCAAATAAAAATCGCTATGGTGTTCGGTTCCAAGGTGATCAAAGCCGGCAACGGCGAACCCGATGCGTTCGAGACGCAGATCGGCCAGGCCATCCTGGAGCTGGAGATGAACTCGGATCTGAAGCCGCAGCTGCGTGATCTGTACATCACCCGCGCGCGTGAGGTCGAGTTCAACAACAAGAAGGCGATCATCATCTACGTGCCGGTGCCGAAACAGAAGGCCTTCCAGAAGGTACAGACCCGTCTGGTGCGCGAGTTGGAGAAGAAGTTCTCCGGCAAGCACGTCGTGTTCATTGCCGAGCGCCGCATTCTGCCCAAACCGATGCGTGGACGCCGCGACCCCAACAAGCAGAAGAGACCGCGTTCCCGAACGCTCA ]
consensusID : consensus_6167#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 656 fasta sequence
[CCGAGGAAAAAAGCGCAAAAGAAACGAAGGAAAAACCAGACGCAAAACGGCTCTAGGAGAGACACGCTTTAGAGTAACGCCGGCAACAATTGGCACCTAGGAACACAGTGCACCAGTGGGAATTGGGTGCTGCGCGAGGGTCAGTATTACAACCCGTACTTCCCCGGTGGTGCCATCTCGATGGCGCAGGCACTGTACAACGAGGCCGCTGAATATTCCGACGGTACGCCACCGACGGCCAGCCAGCTGGCGAAGGATGTGTCCACGTTCCTGGTGTGGGCCGCCGAACCTTACCACGACGAGCGCAAGCGCATGGGCATCAAATCGGTCGGCATCATCATGATCCTCGGTGCGCTGTCCTACTACATCAAGCGACACAAGTGGGCCGCGCTCAAGACGCGAAAGATTTCCTTCCACCCAAAGAGCAAGTAAGCGGGACCGCGCTCGGGCCGCACCTACAACAGCAGCAACAGCATAGGTGAGATGTGAGGTGGAGGAAACTGGCCATCAGCTGCCGACCGCGCGAATCGAGACCACTGGACGGGAATCATCGGCATACAAACAACAAAACACACACACAGAGGAAAAAAGCGCAAAAGAAACGAAGGAAAAACAACTGTTACTACCGCGCAAAACATAACGAGAAACACACGCAT]
[+] EMBL BM647580 [CCGAGGAAAAAAGCGCAAAAGAAACGAAGGAAAAACCAGACGCAAAACGGCTCTAGGAGAGACACGCTTTAGAGTAACGCCGGCAACAATTGGCACCTAGGAACACAGTGCACCAGTGGGAATTGGGTGCTGCGCGAGGGTCAGTATTACAACCCGTACTTCCCCGGTGGTGCCATCTCGATGGCGCAGGCACTGTACAACGAGGCCGCTGAATATTCCGACGGTACGCCACCGACGGCCAGCCAGCTGGCGAAGGATGTGTCCACGTTCCTGGTGTGGGCCGCCGAACCTTACCACGACGAGCGCAAGCGCATGGGCATCAAATCGGTCGGCATCATCATGATCCTCGGTGCGCTGTCCTACTACATCAAGCGACACAAGTGGGCCGCGCTCAAGACGCGAAAGATTTCCTTCCACCCAAAGAGCAAGTAAGCGGGACCGCGCTCGGGCCGCACCTACAACAGCAGCAACAGCATAGGTGAGATGTGAGGTGGAGGAAACTGGCCATCAGCTGCCGACCGCGCGAATCGAGACCACTGGACGGGAATCATCGGCATACAAACAACAAAACACACACACAGAGGAAAAAAGCGCAAAAGAAACGAAGGAAAAACAACTGTTACTACCGCGCAAAACATAACGAGAAACACACGCAT]
consensusID : consensus_6167#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 329 fasta sequence
[TGCCCCCCAAGGATTAAACCTGTTGACGGATAAATCCTGCCAAAATCATTGCTCGGCGCTGCCGGGCATGGTCTTGAAAAGGAGCTCAATCTGAGCGGCAACCGTTTCGCGCACTTTCCCGAACAGGTTATCGAGCTGCGATCGCTCAAGTATCTCTACTGGCGGCAATCAGATCACCAACGTTTCGAAGGACATCTGGAAGCTGAGAACTACAGTCCCTGGTTCACTGGGGTGGAAACCTCATTAACGAGATTCCGGGAAACGGCGGGCTTGGTCAAACAACCTGGACGCGCTCCTCTCTGTGAATAATCTGGTTCGAGGGGCTTCTT]
[+] EMBL AL695921 [TGCCCCCCAAGGATTAAACCTGTTGACGGATAAATCCTGCCAAAATCATTGCTCGGCGCTGCCGGGCATGGTCTTGAAAAGGAGCTCAATCTGAGCGGCAACCGTTTCGCGCACTTTCCCGAACAGGTTATCGAGCTGCGATCGCTCAAGTATCTCTACTGGCGGCAATCAGATCACCAACGTTTCGAAGGACATCTGGAAGCTGAGAACTACAGTCCCTGGTTCACTGGGGTGGAAACCTCATTAACGAGATTCCGGGAAACGGCGGGCTTGGTCAAACAACCTGGACGCGCTCCTCTCTGTGAATAATCTGGTTCGAGGGGCTTCTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6167#2 ------------------------------------------------------CCGAGG 6
consensus_6167#3 ------------------------------------------------------------
consensus_6167#0 CCCGAGGTTANGCGATACACGATCCACCAAAACCAGCGTATATCTGGCACACATTGCGCA 60
consensus_6167#1 ------------------------------------------------------------
consensus_6167#2 AAAAAAGCGCAAAAGAAACGAAGGAAAAACCAGACGCAAAACGGCTCTAGGAG-AGACAC 65
consensus_6167#3 ---------------------------------------TGCCCCCCAAGGATTAAACCT 21
consensus_6167#0 GCTACCGGGAGCAAGTCGCTCCGATACAACCGCACCGATCGACTTTTCCGNGTCACCTCC 120
consensus_6167#1 ----CCGCCCACGCGTC-CGCCCACGCGTCCGCATCTTTGATGTGCTAGTGGACACATTT 55
*
consensus_6167#2 GCTTTAGAGTAACGCC--GGCAACAATTGGCACCTAGGAACACAGTGCACCAG-TGGGAA 122
consensus_6167#3 GTTGACGGATAAATCC--TGCCAAAATCATTGCTCGGCGCTGCCGGGCATGGTCTTGAAA 79
consensus_6167#0 ATCAAGCAACCGCTCCAAGATGAACAATGCTACTCACCGGTGGACTACTTGTTCCTGCTC 180
consensus_6167#1 CGTTGTGAACCCAAATAAAAATCGCTATGGTGTTCGGTTCCAAGGTGATCAAAGCCGGCA 115
*
consensus_6167#2 TTGGGTG---CTGCGCGAGGGTCAGTATTACAACCCGTACTTCCCCGGTGGTGCCATCT- 178
consensus_6167#3 AGGAGCT---CAATCTGAGCGGCA--ACCGTTTCGCGCACTTTCCCGAACAGGTTATCGA 134
consensus_6167#0 GTGGCCTGGCTCGCTCGTGTCCTGGCTCGATGTTTGGCCCTGTTCTGGACCTGTTCTGGA 240
consensus_6167#1 ACGGCGAACCCGATGCGTTCGAGACGCAGATCGGCCAGGCCATCCTGGAGCTGGAGATGA 175
* * * * * *
consensus_6167#2 ----CGATG---GCGCAGGCACTGTACAACGAGGCCGCTGAATATTCCGACGGTACGCCA 231
consensus_6167#3 GCTGCGATC---GCTCAAGTATC-TCTACTGGCGGCAATCAGATCACCAACGTTTCG--A 188
consensus_6167#0 CCGGCGCTC---AGCTGCCTGGGCGCAGTCGGCGGCTATCCGGGCTGCGGTCGGAGGGTA 297
consensus_6167#1 ACTCGGATCTGAAGCCGCAGCTGCGTGATCTGTACATCACCCGCGCGCGTGAGGTCGAGT 235
* * * *
consensus_6167#2 CCGACGGCCAGCCAGCTGGCGAAGGATGTGT-CC---ACGTTCCTGGTGTGGGCCGCCGA 287
consensus_6167#3 AGGACATCTGGA-AGCTGAGAACTACAGTCC-CT---GGTTCACTGGGGTGGA------A 237
consensus_6167#0 TCCGGGCGCGGTCGGCGGTTTGCCCATGTAC-CCTGGGCCGTCCCGGCCTTGGACATGCT 356
consensus_6167#1 TCAACAACAAGAAGGCGATCATCATCTACGTGCCGGTGCCGAAACAGAAGGCCTTCCAGA 295
* ** * *
consensus_6167#2 ACCTTACCACGACGA----GCGCAAGCGCATGGGC-ATCAAATCGGTCGGCATCATCATG 342
consensus_6167#3 ACCTCATTAACGAGA----TTCCGGGAAACGGCGG-GCTTGGTCAAACAACCTGGACGCG 292
consensus_6167#0 GCCTGTGTACCCTGCCGTCTACCGGGCTGCACCGATGCTGCCCCTGACTGCCTGGNCATG 416
consensus_6167#1 AGGTACAGACCCGTCTGGTGCGCGAGTTGGAGAAGAAGTTC-TCCGGCAAGCACGTCGTG 354
* * * * * * * *
consensus_6167#2 ATCCTCGGTGCGC-TGTCCTACTACATCAA---GCGACACAAGTGGGCCGCGCTCAAGAC 398
consensus_6167#3 CTCCTCTCTGTGAATAATCTGGTTCGAGGG---GCTTCTT-------------------- 329
consensus_6167#0 CCGTACGCTTACGGTCTGCTGCCATGCCGGCTGATGATGCCAGTTGCGCCACCCACACTG 476
consensus_6167#1 TTCATTGCCGAGCGCCGCATTCTGCCCAAACC-GATGCGTGGACGCCGCGACCCCAACAA 413
*
consensus_6167#2 GCGAAAGATTTCCTTCCACCCAAAGAGCAAGTAAGCGGGACCGCGCTCGGGCCGCACCTA 458
consensus_6167#3 ------------------------------------------------------------
consensus_6167#0 GCAGGCAACCTGCTGCACCGTATGGCTCGAACACGACGTGCTGGGACGGTATGGTGTGGN 536
consensus_6167#1 GCAGAAGAGACCGCGTTCCCGAACGCTC-ACCGCCGTGTACGATGCCATCCTGGAGGATC 472
consensus_6167#2 CAACAGCAGCAACAGCATAGGTGAGATGTGAGGTGGAGGAAACTGGCCATCAGCTGCCGA 518
consensus_6167#3 ------------------------------------------------------------
consensus_6167#0 CGACCATGGCCG-AGGATTTGCAAGCAGGCGCGCCCAGGACATGCAGTGCCGCCAGCTNA 595
consensus_6167#1 TGGTATTCCCGGCGGAGGTGGTCGGCAAGCGTATCCGCGTCAAGCTCGACGGAT--CCCA 530
consensus_6167#2 CCGCGCGAATCGAGACCACTGGACGGGAATCATCGGCATACAAACAACAAAACACACACA 578
consensus_6167#3 ------------------------------------------------------------
consensus_6167#0 GCACGCGCTTCGACGCCTGACGAACAGCAT-GCTGACTGACGACCGGCTCCTACTGGCAG 654
consensus_6167#1 GCTGATAAAGGTGCACCTGGATAAGAACCA-GCAGACCACCATCGAACACAAAGTTGACA 589
consensus_6167#2 CAGAGGAAAAAAGCGCAAAAGAAACGAAGGAAAAACAACTGTTACTACCGCGCAAAACAT 638
consensus_6167#3 ------------------------------------------------------------
consensus_6167#0 TACAAGCGCTGGCCAATGCGCTCCAGCTGCGCACNCGGACCTGACCGCGGGGCACANGCA 714
consensus_6167#1 CTTTTGCGTCGGTGTACAAGAAGCTGACTGGC-CGTGACGTTACGTTCGAATTCCCAGAG 648
consensus_6167#2 AACGAGAAACACACGCAT 656
consensus_6167#3 ------------------
consensus_6167#0 CTCGAGCAGGAANCT--- 729
consensus_6167#1 AACTACCTGTAAAAT--- 663
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||