cluster # 6170

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Anopheles gambiae
cluster # 6170 cluster # 6170 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6170#0 length = 844 sequences # 4

consensus_6170#1 length = 691 sequences # 1

consensusID : consensus_6170#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 844
fasta sequence

                              [CGCGACACATTGCACATCCAAGCAGGCGGCGGCTTAATCGGGAGGCAAAAGGGACACTTGCAAAGGAAATTTCAAAACCATTCTCCCAAACCGTACCAAAAACAGCAGAACACAGGATCGGAAAGAGCACATCGAGCAAGTACTGTATAACACACATAGAAGAAAAAAGGTATCTCCATTCGAAGGTATCTCTTTTTAGGTCGTTTAAAGGCGGCATCCTGTTTAGATTAGCAGAAGGTACGGGAGAGTTCGCGCACGCAGCCAGCCAGCACACAGCCTCATCAACCCGTAACATCCCATTTCAACTTTGTCAATTGTGTGTGTGAATGTGTGTGTGTGCGTGTGTTGAATGTCATCCGAGGTATAGCACCCATGCTGAGACTAATACGAGTTACCATTGCAATGCGGTTGAAATATAAGCTGAAGTGAGGCTGGCGAGCTAGTTCTAAAAAGCCCCCGCGCCAATGGAAGGTTTAGTAGTTTGCTTGGATGATGTAGCCCGTTTAAAAGTGTGTAGCCGCATCACTTCTCCCTCCCTTGACGAGATTAGTGTCTATGTGTGCGTGTGTGTGAGAGAGAGAGAAGGAGTGTATGCTCCTGTTGCGTTGTTGCTGGGTTGTGTCAAAATAGCAACACACACTCTGGTCGGGTTGCTGCAACTGAAGAAAAAAATGGCAAAGCAGCGCAATTATTCTATATCAGTAACATTAGAAAACCACNATATCCATTTTCTTACTAGGGTTTCCAGGAGTTCTCATAGCTGNGGGATGCTTTATTGACTCTTTCATACGTGAACTTAATGTAGTGGGAATTGGATTCTATAGTACCATTATTGGACAAATAG]

[+] EMBL BX621141             [CGCGACACATTGCACATCCAAGCAGGCGGCGGCTTAATCGGGAGGCAAAAGGGACACTTGCAAAGGAAATTTCAAAACCATTCTCCCAAACCGTACCAAAAACAGCAGAACACAGGATCGGAAAGAGCACATCGAGCAAGTACTGTATAACACACATAGAAGAAAAAAGGTATCTCCATTCGAAGGTATCTCTTTTTAGGTCGTTTAAAGGCGGCATCCTGTTTAGATTAGCAGAAGGTACGGGAGAGTTCGCGCACGCAGCCAGCCAGCACACAGCCTCATCAACCCGTAACATCCCATTTCAACTTTGTCAATTGTGTGTGTGAATGTGTGTGTGTGCGTGTGTTGAATGTCATCCGAGGTATAGCACCCATGCTGAGACTAATACGAGTTACCATTGCAATGCGGTTGAAATATAAGCTGAAGTGAGGCTGGCGAGCTAGTTCTAAAAAGCCCCCGCGCCAATGGAAGGTTTAGTAGTTTGCTTGGATGATGTAGCCCGTTTAAAAGTGTGTAGCCGCATCACTTCTCCCTCCCTTGACGAGATTAGTGTCTATGTGTGCGTGTGTGTGAGAGAGAGAGAAGGAGTGTATGCTCCTGTTGCGTTGTTGCTGGGTTGTGTCAAAATAGCAACACACACTCTGGTCGGGTTGCTGCAACTGAAGAAAAAAATGGCAAAGCAGCGCAATTATTCTATATCAGTAACATTAGAAAACCACNATATCCATTTTCTTACTAGGGTTTCCAGGAGTTCTCATAGCTGNGGGATGCTTTATTGACTCTTTCATACGTGAACTTAATGTAGTGGGAATTGGATTCTAT                      ]
[+] EMBL BX623400             [                          CGGCGGCTTANTCGGGAGGCAAAAGGGACACTTGCAAAGGAAATTTCAAAACCATTCTCCCAAACCGTACCAAAAACAGCAGAACACAGGATCGGAAAGAGCACATCGAGCAAGTACTGTATAACACACATAGAAGAAAAAAGGTATCTCCATTCGAAGGTATCTCTTTTTAGGTCGTTTAAAGGCGGCATCCTGTTTAGATTAGCAGAAGGTACGGGAGAGTTCGCGCACGCAGCCAGCCAGCACACAGCCTCATCAACCCGTAACATCCCATTTCAACTTTGTCAATTGTGTGTGTGAATGTGTGTGTGTGCGTGTGTTGAATGTCATCCGAGGTATAGCACCCATGCTGAGACTAATACGAGTTACCATTGCAATGCGGTTGAAATATAAGCTGAAGTGAGGCTGGCGAGCTAGTTCTAAAAAGCCCCCGCGCCAATGGAAGGTTTAGTAGTTTGCTTGGATGATGTAGCCCGTTTAAAAGTGTGTAGCCGCATCACTTCTCCCTCCCTTGACGAGATTAGTGTCTATGTGTGCGTGTGTGTGAGAGAGAGAGAAGGAGTGTATGCTCCTGTTGCGTTGTTGCTGGGTTGTGTCAAAATAGCAACACACACTCTGGTCGGGTTGCTGCAACTGAAGAAAAAAATGGCAAAGCAGCGCAATTATTCTATA                                                                                                                                                  ]
[+] EMBL BM583950             [                                                                                                                                                                     ccgGGTATCTCCATTCGAAGGTATCTTTTTTCTTGTATGTGAAAGGCGGCATCCTGTTTAGATTAGCAGAAGGTACGGGAGAGTTCGCGCACGCAGCCAGCCAGCACACAGCCTCATCAACCCGTAACATCCCATTTCAACTTTGTCAATTGTGTGTGTGAATGTGTGTGTGTGCGTGTGTTGAATGTCATCCGAGGTATAGCACCCATGCTGAGACTAATACGAGTTACCATTGCAATGCGGTTGAAATATAAGCTGAAGTGAGGCTGGCGAGCTAGTTCTAAAAAGCCCCCGCGCCAATGGAAGGTTTAGTAGTTTGCTTGGATGATGTAGCCCGTTTAAAAGTGTGTAGCCGCATCACTTCTCCCTCCCTTGACGAGATTAGTGTCTATGTGTGCGTGTGTGTGAGAGAGAGAGAAGGAGTGTATGCTCCTGTTGCGTTGTTGCTGGGTTGTGTCAAAATAGCAACACACACTCTGGTCGGGTTGCTGC                                                                                                                                                                                           ]
[+] EMBL BX616064             [                                                                                                                                                                                                                                                                                                            TTCAACTTTGTCAATTGTGTGTGTGAATGTGTGTGTGTGCGTGTGTTGAATGTCATCCGAGGTATAGCACCCATGCTGAGACTAATACGAGTTACCATTGCAATGCGGTTGAAATATAAGCTGAAGTGAGGCTGGCGAGCTAGTTCTAAAAAGCCCCCGCGCCAATGGAAGGTTTAGTAGTTTGCTTGGATGATGTAGCCCGTTTAAAAGTGTGTAGCCGCATCACTTCTCCCTCCCTTGACGAGATTAGTGTCTATGTGTGCGTGTGTGTGAGAGAGAGAGAAGGAGTGTATGCTCCTGTTGCGTTGTTGCTGGGTTGTGTCAAAATAGCAACACACACTCTGGTCGGGTTGCTGCAACTGAAGAAAAAAATGGCAAAGCAGCGCAATTATTCTATATCAGTAACATTAGAAAACCACAATATCCATTTTCTTACTAGGTTTTCCAGGGGTTCTCATAGCTGTGGGATACTTTATTGACTCTTTCATACGTGAACTTAATGTAGTGGGAATTGGATTCTATAGTACCATTATTGGACAAATAG]




>consensus_6170#0
CGCGACACATTGCACATCCAAGCAGGCGGCGGCTTAATCGGGAGGCAAAAGGGACACTTG
CAAAGGAAATTTCAAAACCATTCTCCCAAACCGTACCAAAAACAGCAGAACACAGGATCG
GAAAGAGCACATCGAGCAAGTACTGTATAACACACATAGAAGAAAAAAGGTATCTCCATT
CGAAGGTATCTCTTTTTAGGTCGTTTAAAGGCGGCATCCTGTTTAGATTAGCAGAAGGTA
CGGGAGAGTTCGCGCACGCAGCCAGCCAGCACACAGCCTCATCAACCCGTAACATCCCAT
TTCAACTTTGTCAATTGTGTGTGTGAATGTGTGTGTGTGCGTGTGTTGAATGTCATCCGA
GGTATAGCACCCATGCTGAGACTAATACGAGTTACCATTGCAATGCGGTTGAAATATAAG
CTGAAGTGAGGCTGGCGAGCTAGTTCTAAAAAGCCCCCGCGCCAATGGAAGGTTTAGTAG
TTTGCTTGGATGATGTAGCCCGTTTAAAAGTGTGTAGCCGCATCACTTCTCCCTCCCTTG
ACGAGATTAGTGTCTATGTGTGCGTGTGTGTGAGAGAGAGAGAAGGAGTGTATGCTCCTG
TTGCGTTGTTGCTGGGTTGTGTCAAAATAGCAACACACACTCTGGTCGGGTTGCTGCAAC
TGAAGAAAAAAATGGCAAAGCAGCGCAATTATTCTATATCAGTAACATTAGAAAACCACN
ATATCCATTTTCTTACTAGGGTTTCCAGGAGTTCTCATAGCTGNGGGATGCTTTATTGAC
TCTTTCATACGTGAACTTAATGTAGTGGGAATTGGATTCTATAGTACCATTATTGGACAA
ATAG

consensusID : consensus_6170#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 691
fasta sequence

                              [CCGGGGGGCGGCGGCAGCGGTGGCGGAGGCAACAGCTCGTCCAAGTCGTCCTCTCCCTCGCCGGCTTCTTCATCATCGTCGTGCGCCTCTCCATCGCCGCCCGCGTCGCCTATCGAGTCAAATATCAATATTAATGGTAATGGTAGTATTTGTTGAAAAAAGTAGCACGAGAAAGCAGTAATGAGGTAATTCGAGGAGGGGGAGAAATGGGCACTGCAGGGTTTGCTCTTCAACTGGAGCACGACACAATGCACATCCAAGCAGGCGGCGGCTTAAGCGGGAGCAAAAGGGACACTTGCAAAGGAAAATTTCAAAACCATTCTCCCAAACCGTACCAAAAACAGCAGAACACAGGATCGGAAAGAGCACATCGAGCAAGTACTGTATAACAAACACACACGAAAAGATGTTACAAAAGTTATACCATTCGAAGGTATCTCTTTTTAGGTCGTTTAAAGGCGGCATCCTGTTTAGATTAGCAGAAGGTACGGGAGAGTTCGCGCACGCAGCCAGCCAGCACACAGCCTCATCAACCCGTAACATCCCATTTCAACTTTGTCAATTGTGTGTGTGTGAATGTGTGCGTGTCATCCGAGGTGTAGCACCCATGCTCAGACTAATTCGAGTTACCATTGCAATGAGGATGAAATATAAGCTGAAGTGAGGCTGGCGAGCTAGTTCTAAAAAGCCC]

[+] EMBL BM584153             [CCGGGGGGCGGCGGCAGCGGTGGCGGAGGCAACAGCTCGTCCAAGTCGTCCTCTCCCTCGCCGGCTTCTTCATCATCGTCGTGCGCCTCTCCATCGCCGCCCGCGTCGCCTATCGAGTCAAATATCAATATTAATGGTAATGGTAGTATTTGTTGAAAAAAGTAGCACGAGAAAGCAGTAATGAGGTAATTCGAGGAGGGGGAGAAATGGGCACTGCAGGGTTTGCTCTTCAACTGGAGCACGACACAATGCACATCCAAGCAGGCGGCGGCTTAAGCGGGAGCAAAAGGGACACTTGCAAAGGAAAATTTCAAAACCATTCTCCCAAACCGTACCAAAAACAGCAGAACACAGGATCGGAAAGAGCACATCGAGCAAGTACTGTATAACAAACACACACGAAAAGATGTTACAAAAGTTATACCATTCGAAGGTATCTCTTTTTAGGTCGTTTAAAGGCGGCATCCTGTTTAGATTAGCAGAAGGTACGGGAGAGTTCGCGCACGCAGCCAGCCAGCACACAGCCTCATCAACCCGTAACATCCCATTTCAACTTTGTCAATTGTGTGTGTGTGAATGTGTGCGTGTCATCCGAGGTGTAGCACCCATGCTCAGACTAATTCGAGTTACCATTGCAATGAGGATGAAATATAAGCTGAAGTGAGGCTGGCGAGCTAGTTCTAAAAAGCCC]




>consensus_6170#1
CCGGGGGGCGGCGGCAGCGGTGGCGGAGGCAACAGCTCGTCCAAGTCGTCCTCTCCCTCG
CCGGCTTCTTCATCATCGTCGTGCGCCTCTCCATCGCCGCCCGCGTCGCCTATCGAGTCA
AATATCAATATTAATGGTAATGGTAGTATTTGTTGAAAAAAGTAGCACGAGAAAGCAGTA
ATGAGGTAATTCGAGGAGGGGGAGAAATGGGCACTGCAGGGTTTGCTCTTCAACTGGAGC
ACGACACAATGCACATCCAAGCAGGCGGCGGCTTAAGCGGGAGCAAAAGGGACACTTGCA
AAGGAAAATTTCAAAACCATTCTCCCAAACCGTACCAAAAACAGCAGAACACAGGATCGG
AAAGAGCACATCGAGCAAGTACTGTATAACAAACACACACGAAAAGATGTTACAAAAGTT
ATACCATTCGAAGGTATCTCTTTTTAGGTCGTTTAAAGGCGGCATCCTGTTTAGATTAGC
AGAAGGTACGGGAGAGTTCGCGCACGCAGCCAGCCAGCACACAGCCTCATCAACCCGTAA
CATCCCATTTCAACTTTGTCAATTGTGTGTGTGTGAATGTGTGCGTGTCATCCGAGGTGT
AGCACCCATGCTCAGACTAATTCGAGTTACCATTGCAATGAGGATGAAATATAAGCTGAA
GTGAGGCTGGCGAGCTAGTTCTAAAAAGCCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6170#0      ------------------------------------------------------------
consensus_6170#1      CCGGGGGGCGGCGGCAGCGGTGGCGGAGGCAACAGCTCGTCCAAGTCGTCCTCTCCCTCG 60
                                                                                  

consensus_6170#0      ------------------------------------------------------------
consensus_6170#1      CCGGCTTCTTCATCATCGTCGTGCGCCTCTCCATCGCCGCCCGCGTCGCCTATCGAGTCA 120
                                                                                  

consensus_6170#0      ------------------------------------------------------------
consensus_6170#1      AATATCAATATTAATGGTAATGGTAGTATTTGTTGAAAAAAGTAGCACGAGAAAGCAGTA 180
                                                                                  

consensus_6170#0      -----------------------------------------------------------C 1
consensus_6170#1      ATGAGGTAATTCGAGGAGGGGGAGAAATGGGCACTGCAGGGTTTGCTCTTCAACTGGAGC 240
                                                                                 *

consensus_6170#0      GCGACACATTGCACATCCAAGCAGGCGGCGGCTTAATCGGGAGGCAAAAGGGACACTTGC 61
consensus_6170#1      ACGACACAATGCACATCCAAGCAGGCGGCGGCTTAAGCGGGAG-CAAAAGGGACACTTGC 299
                       ******* *************************** ****** ****************

consensus_6170#0      AAAGGAAA-TTTCAAAACCATTCTCCCAAACCGTACCAAAAACAGCAGAACACAGGATCG 120
consensus_6170#1      AAAGGAAAATTTCAAAACCATTCTCCCAAACCGTACCAAAAACAGCAGAACACAGGATCG 359
                      ******** ***************************************************

consensus_6170#0      GAAAGAGCACATCGAGCAAGTACTGTATAACACACATAGAAGAAAA---------AAGGT 171
consensus_6170#1      GAAAGAGCACATCGAGCAAGTACTGTATAACAAACACACACGAAAAGATGTTACAAAAGT 419
                      ******************************** *** * * *****         ** **

consensus_6170#0      ATCTCCATTCGAAGGTATCTCTTTTTAGGTCGTTTAAAGGCGGCATCCTGTTTAGATTAG 231
consensus_6170#1      TATACCATTCGAAGGTATCTCTTTTTAGGTCGTTTAAAGGCGGCATCCTGTTTAGATTAG 479
                          ********************************************************

consensus_6170#0      CAGAAGGTACGGGAGAGTTCGCGCACGCAGCCAGCCAGCACACAGCCTCATCAACCCGTA 291
consensus_6170#1      CAGAAGGTACGGGAGAGTTCGCGCACGCAGCCAGCCAGCACACAGCCTCATCAACCCGTA 539
                      ************************************************************

consensus_6170#0      ACATCCCATTTCAACTTTGTCAATTGTGTGTGTGAATGTGTGTGTGTGCGTGTGTTGAAT 351
consensus_6170#1      ACATCCCATTTCAACTTTGTCAATTGTGTGTGTG----TGAATGTGTGCGTGT------- 588
                      **********************************    **  ***********       

consensus_6170#0      GTCATCCGAGGTATAGCACCCATGCTGAGACTAATACGAGTTACCATTGCAATGCGGTTG 411
consensus_6170#1      --CATCCGAGGTGTAGCACCCATGCTCAGACTAATTCGAGTTACCATTGCAATGAGGATG 646
                        ********** ************* ******** ****************** ** **

consensus_6170#0      AAATATAAGCTGAAGTGAGGCTGGCGAGCTAGTTCTAAAAAGCCCCCGCGCCAATGGAAG 471
consensus_6170#1      AAATATAAGCTGAAGTGAGGCTGGCGAGCTAGTTCTAAAAAGCCC--------------- 691
                      *********************************************               

consensus_6170#0      GTTTAGTAGTTTGCTTGGATGATGTAGCCCGTTTAAAAGTGTGTAGCCGCATCACTTCTC 531
consensus_6170#1      ------------------------------------------------------------
                                                                                  

consensus_6170#0      CCTCCCTTGACGAGATTAGTGTCTATGTGTGCGTGTGTGTGAGAGAGAGAGAAGGAGTGT 591
consensus_6170#1      ------------------------------------------------------------
                                                                                  

consensus_6170#0      ATGCTCCTGTTGCGTTGTTGCTGGGTTGTGTCAAAATAGCAACACACACTCTGGTCGGGT 651
consensus_6170#1      ------------------------------------------------------------
                                                                                  

consensus_6170#0      TGCTGCAACTGAAGAAAAAAATGGCAAAGCAGCGCAATTATTCTATATCAGTAACATTAG 711
consensus_6170#1      ------------------------------------------------------------
                                                                                  

consensus_6170#0      AAAACCACNATATCCATTTTCTTACTAGGGTTTCCAGGAGTTCTCATAGCTGNGGGATGC 771
consensus_6170#1      ------------------------------------------------------------
                                                                                  

consensus_6170#0      TTTATTGACTCTTTCATACGTGAACTTAATGTAGTGGGAATTGGATTCTATAGTACCATT 831
consensus_6170#1      ------------------------------------------------------------
                                                                                  

consensus_6170#0      ATTGGACAAATAG 844
consensus_6170#1      -------------