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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6174#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 684 fasta sequence
[CCGGTAAACCGCATATCTGTCGATCGGAATATCCTGCTAATTTCTTCAGCCATCTGTAAAGAAGCAGTGAGCCACCCTCTCTTTCCCAGGCGCGGCACGGCACATTGGTGTGAGCGGGCGGTTTGTGCGGCGTTTTGCTGGTGTGTGATCGAATACGCCAAGTGCGCGACCCGGCCGACAGTCCGTCGTTTTGTTTGGTTGCTGTTTCTCCGTGAGCACCAGGAGGCTGGATTGTGTTAAGTGATAGCGTGTGAGAGATACTGTGACCCTTCCCCAAAATCGACCAAAGCGTGTACCCGGTGTGTGCGTGAGTGATTGTGTGCGGGAAAGCGAGAAGCAATTGTGTGTGTGTGTGTTGTGCTGCAGAGGGCGAGAGGAGCAGGCACAGGTGGTGTGGAACGTTTCGTCGTCTCGCCGCAATCGGCGGTCTATGACCGCTGGAAAGAAAGCAGTAGAAGCAAAAGTAGGCATCTTGCGGTAGAAGTGAACAGGAAAAGGCCTCAGGATGAGTTGCCCGATGCCGGAAATTGGTTCCTGCATCTCGCTGATATCGAAGGCCGATATCCGCTACGAGGGACTGTTGTTCACCGTTGATCCGGAGCGGTGCACGATCGCCCTTGCTCGAGTGAAGTCGTATGGTACCGAGGATCGGGAGACCCAGTTCCCGATTGCGCCGCAGAACCA]
[+] EMBL BM609511 [CCGGTAAACCGCATATCTGTCGATCGGAATATCCTGCTAATTTCTTCAGCCATCTGTAAAGAAGCAGTGAGCCACCCTCTCTTTCCCAGGCGCGGCACGGCACATTGGTGTGAGCGGGCGGTTTGTGCGGCGTTTTGCTGGTGTGTGATCGAATACGCCAAGTGCGCGACCCGGCCGACAGTCCGTCGTTTTGTTTGGTTGCTGTTTCTCCGTGAGCACCAGGAGGCTGGATTGTGTTAAGTGATAGCGTGTGAGAGATACTGTGACCCTTCCCCAAAATCGACCAAAGCGTGTACCCGGTGTGTGCGTGAGTGATTGTGTGCGGGAAAGCGAGAAGCAATTGTGTGTGTGTGTGTTGTGCTGCAGAGGGCGAGAGGAGCAGGCACAGGTGGTGTGGAACGTTTCGTCGTCTCGCCGCAATCGGCGGTCTATGACCGCTGGAAAGAAAGCAGTAGAAGCAAAAGTAGGCATCTTGCGGTAGAAGTGAACAGGAAAAGGCCTCAGGATGAGTTGCCCGATGCCGGAAATTGGTTCCTGCATCTCGCTGATATCGAAGGCCGATATCCGCTACGAGGGACTGTTGTTCACCGTTGATCCGGAGCGGTGCACGATCGCCCTTGCTCGAGTGAAGTCGTATGGTACCGAGGATCGGGAGACCCAGTTCCCGATTGCGCCGCAGAACCA]
consensusID : consensus_6174#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 659 fasta sequence
[CGACCCACGCGTCCGGCGCGCTGTCGATTTTTTTCTCCTCCACACAACGTCAGAGAAGTGAGTGTGCGGAATAGCGAGTGCAGCGAGCGTTCCTTTCTTCGGTTTTTTCGGCGTGTGTCACGTAGAAATTCGCGCTTCGCAAGGCGGCTCGACGGCGTGTGTGCGTGTCCCCGGGTGTGTTAGCGGTGCTCTCTTTCCCAGGCGCGGCACAGCACATTGGTGTGTGACCGGGCGGTTTGTGTGGCGTTTTGCTGGTGTGTGATCGAATACGCCAAGTGCGCGACCCGGCCGACAGCCCGTCGTTTTGTTTGGCTGCTGTTTCTCCGTGAGCACCAGGAGGAGGCTGAATTGTGTTGAGTGGTAGCGTGTGAGAGATACTGTGACCCTT-CCCCAAAAACGACCAAAGC--GTGTACCCGGTGTGTGCGTGAGTGATTGTGTGCGGGAAGGCGAGAAGCAA-T---TGTGTGTGTGTGTTGTGCTGCAGAGGGCGAGCGGAGCAGGCACAGGTGGTGTGGAACGTTTCGTCGTCTCGCCGCAGTCGGCGGTCTATGACCGCTGGAAAGAAAGCAGTAGAAGCAAAAGTAGGCATCTTGCGGTAGAAGTGAACAGGAAAAGGCCTCAGGATGAGTTGCCCGATGCCGGAAATTGGTTCCTGCATCTCG]
[+] EMBL BM640677 [CGACCCACGCGTCCGGCGCGCTGTCGATTTTTTTCTCCTCCACACAACGTCAGAGAAGTGAGTGTGCGGAATAGCGAGTGCAGCGAGCGTTCCTTTCTTCGGTCTTTTCGGCGTGTGTCGCGTAGAAAATCGCGTTTCGCAAGGCGGCTCCACGGCGTGTGTGCGTGTCCCCGGGTGTGTTAGCGGTGCTCTCTTTCCCAGGCGCGGCACAGCACATTG GTGTGACCGGGCGGTTTGTGTGGCGTTTTGCTGGTGTGTGATCGAATACGCCAAGTGCGCGACCCGGCCGACAGTCCGTCGTTTTGTTTGGTTGCTGTTTCTCCGTGAGCACC AGGAGGCTGGATTGTGTTAAGTGATAGCGTGTGAGAGATACTGTGACCCTT CCCCAAAAACGACCAAAGC GTGTACCCGGTGTGTGCGTGAGTGATTGTGTGCGGGAAGGCGAGAAGCAA T TGTGTGTGTGTGTTGTGCTGCAGAGGGCGAGCGGAGCAGGCACAGGTGGTGTGGAACGTTTCGTCGTCTCGCCGCAGTCGGCGGTCTATGACCGCTGGAAAGAAAGCAGTAGAAGCAAAAGTAGGCATCTTGCGGTAGAAGTGAACAGGAAAAGGCCT ]
[+] EMBL BM600984 [ ccgGTCGATTTTTTTCTCCTCCACACAACGTCAGAGAAGTGAGTGTGCGGAATAGCGAGTGCAGCGAGCGTTCCTTTCTTCGGTTTTTTCGGCGTGTGTCACGTAGAAATTCGCGCTTCGCAAGGCGGCTCGACGGCGTGTGTGCGTGTCCCCGGGTGTGTTAGCGGTGCTCTCTTTCCCAGGCGCGGCACAGCACATTGGTGTGTGACCGGGCGGTTTGTGTGGCGTTTTGCTGGTGTGTGATCGAATACGCCAAGTGCGCGACCCGGCCGACAGCCCGTCGTTTTGTTTGGCTGCTGTTTCTCCGTGAGCACCAGGAGGAGGCTGAATTGTGTTGAGTGGTAGCGTGTG ]
[+] EMBL BM587340 [ ccgGAGAAGTGAGTGTGCGGAATAGCGAGTGCAGCGAGCGTTCCTTTCTTCGGTTTTTTCGGCGTGTGTCACGTAGAAATTCGCGCTTCGCAAGGCGGCTCGACGGCGTGTGTGCGTGTCCCCGGGTGTGTTAGCGGTGCTCTCTTTCCCAGGCGCGGCACAGCACATTGGTGTGTGACCGGGCGGTTTGTGTGGCGTTTTGCTGGTGTGTGATCGAATACGCCAAGTGCGCGACCCGGCCGACAGCCCGTCGTTTTGTTTGGCTGCTGTTTCTCCGTGAGCACCAGGAGGAGGCTGAATTGTGTTGAGTGGTAGCGTGTGAAAGATACAGTGACTCTTCCCCCAAAAACGACCAAAGCAAGTGTACCCGGTGTGTGCGTGAGTGATTGTGTGCGGGAAAGCGAGAAGCAAGTGGGTGTGTGTGTGTGTTGTGCTGCAGAGGGCGAGAGGAGCAGGCACAGGTGGTGTGGAACGTTTCGTCGTCTCGCCGCAAACGGCGGTCTATGACCGCTGGAAAGAAAGCAGTAGAAG TAAAGCAGGCATCTTGCGGTAGAAGTGAACAGGAAAAGGCCTCAGGATGAGTTGCCCGATGCCGGAAATTGGTTCCTGCATCTCG]
consensusID : consensus_6174#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 508 fasta sequence
[CCGCGGACGCGTGGGCGGACGCGTGGGAGAGAAGTGAGTGTGCGGAATAGCGAGTGCAGCGAGCGTTCCTTTCTTCGGTCTTTTCGGCGTGTGTCGCGTAGAAAATCGCGCTTCGCAAGGCGGCTCCACGGCGTGTGTGCGTGTCCCCGGGTGTGTTAGCGGTGCTCTCTTTCCCAGGCGCGGCACGGCACATTGGTGTGAGCGGGCGGTTTGTGCGGCGTTTTGCTGGTGTGTGATCGAATACGCCAAGTGCGCGACCCGGCCGACAGTCCGTCGTTTTGTTTGGTTGCTGTTTCTCCGTGAGCACCAGGAGGCTGGATTGTGTTAAGTGATAGCGTGTGAGAGATACTGTGACCCTTCCCCAAAATCGACCAAAGCGTGTACCCGGTGTGTGCGTGAGTGATTGTGTGCGGGAAAGCGAGAAGCAATTGTGTGTGTGTGTGTTGTGCTGCAGAGGGCGAGAGGAGCAGGCACAGGTGGTGTGGAACGTTTCGTCGTCTCGCCGCAA]
[+] EMBL BM653003 [CCGCGGACGCGTGGGCGGACGCGTGGGAGAGAAGTGAGTGTGCGGAATAGCGAGTGCAGCGAGCGTTCCTTTCTTCGGTCTTTTCGGCGTGTGTCGCGTAGAAAATCGCGCTTCGCAAGGCGGCTCCACGGCGTGTGTGCGTGTCCCCGGGTGTGTTAGCGGTGCTCTCTTTCCCAGGCGCGGCACGGCACATTGGTGTGAGCGGGCGGTTTGTGCGGCGTTTTGCTGGTGTGTGATCGAATACGCCAAGTGCGCGACCCGGCCGACAGTCCGTCGTTTTGTTTGGTTGCTGTTTCTCCGTGAGCACCAGGAGGCTGGATTGTGTTAAGTGATAGCGTGTGAGAGATACTGTGACCCTTCCCCAAAATCGACCAAAGCGTGTACCCGGTGTGTGCGTGAGTGATTGTGTGCGGGAAAGCGAGAAGCAATTGTGTGTGTGTGTGTTGTGCTGCAGAGGGCGAGAGGAGCAGGCACAGGTGGTGTGGAACGTTTCGTCGTCTCGCCGCAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6174#1 CGACCCACGCGTCCGGCGCGCTGTCGATTTTTTTCTCCTCCACACAACGTCAGAGAAGTG 60
consensus_6174#2 ---------CCGCGGACGCGTGGGCGG--------------ACGCG-TGGGAGAGAAGTG 36
consensus_6174#0 ------------------------------------------------------------
consensus_6174#1 AGTGTGCGGAATAGCGAGTGCAGCGAGCGTTCCTTTCTTCGGTTTTTTCGGCGTGTGTCA 120
consensus_6174#2 AGTGTGCGGAATAGCGAGTGCAGCGAGCGTTCCTTTCTTCGGTCTTTTCGGCGTGTGTCG 96
consensus_6174#0 --------------------------------------CCGGTAAACCGCATATCTGTCG 22
**** * ****
consensus_6174#1 CGTAGAAATTCGCGCTTCGCAAGGCGGCTCGACGGCGTGTGTGCGTGTCCCCGGGTGTGT 180
consensus_6174#2 CGTAGAAAATCGCGCTTCGCAAGGCGGCTCCACGGCGTGTGTGCGTGTCCCCGGGTGTGT 156
consensus_6174#0 ATCGGAATATCCTGCT------AATTTCTTCA-GCCATCTGTAAA-------GAAGCAGT 68
*** ** *** ** * * * * *** * **
consensus_6174#1 TAGCGGTGCTCTCTTTCCCAGGCGCGGCACAGCACATTGGTGTGTGACCGGGCGGTTTGT 240
consensus_6174#2 TAGCGGTGCTCTCTTTCCCAGGCGCGGCACGGCACATTGGTGTGAG--CGGGCGGTTTGT 214
consensus_6174#0 GAGCCACCCTCTCTTTCCCAGGCGCGGCACGGCACATTGGTGTGAG--CGGGCGGTTTGT 126
*** ********************** ************* * ************
consensus_6174#1 GTGGCGTTTTGCTGGTGTGTGATCGAATACGCCAAGTGCGCGACCCGGCCGACAGCCCGT 300
consensus_6174#2 GCGGCGTTTTGCTGGTGTGTGATCGAATACGCCAAGTGCGCGACCCGGCCGACAGTCCGT 274
consensus_6174#0 GCGGCGTTTTGCTGGTGTGTGATCGAATACGCCAAGTGCGCGACCCGGCCGACAGTCCGT 186
* ***************************************************** ****
consensus_6174#1 CGTTTTGTTTGGCTGCTGTTTCTCCGTGAGCACCAGGAGGAGGCTGAATTGTGTTGAGTG 360
consensus_6174#2 CGTTTTGTTTGGTTGCTGTTTCTCCGTGAGCACCAGGAGG---CTGGATTGTGTTAAGTG 331
consensus_6174#0 CGTTTTGTTTGGTTGCTGTTTCTCCGTGAGCACCAGGAGG---CTGGATTGTGTTAAGTG 243
************ *************************** *** ******** ****
consensus_6174#1 GTAGCGTGTGAGAGATACTGTGACCCTTCCCCAAAAACGACCAAAGCGTGTACCCGGTGT 420
consensus_6174#2 ATAGCGTGTGAGAGATACTGTGACCCTTCCCCAAAATCGACCAAAGCGTGTACCCGGTGT 391
consensus_6174#0 ATAGCGTGTGAGAGATACTGTGACCCTTCCCCAAAATCGACCAAAGCGTGTACCCGGTGT 303
*********************************** ***********************
consensus_6174#1 GTGCGTGAGTGATTGTGTGCGGGAAGGCGAGAAGCAATTGTGTGTGTGTGT--TGTGCTG 478
consensus_6174#2 GTGCGTGAGTGATTGTGTGCGGGAAAGCGAGAAGCAATTGTGTGTGTGTGTGTTGTGCTG 451
consensus_6174#0 GTGCGTGAGTGATTGTGTGCGGGAAAGCGAGAAGCAATTGTGTGTGTGTGTGTTGTGCTG 363
************************* ************************* *******
consensus_6174#1 CAGAGGGCGAGCGGAGCAGGCACAGGTGGTGTGGAACGTTTCGTCGTCTCGCCGCAGTCG 538
consensus_6174#2 CAGAGGGCGAGAGGAGCAGGCACAGGTGGTGTGGAACGTTTCGTCGTCTCGCCGCAA--- 508
consensus_6174#0 CAGAGGGCGAGAGGAGCAGGCACAGGTGGTGTGGAACGTTTCGTCGTCTCGCCGCAATCG 423
*********** ********************************************
consensus_6174#1 GCGGTCTATGACCGCTGGAAAGAAAGCAGTAGAAGCAAAAGTAGGCATCTTGCGGTAGAA 598
consensus_6174#2 ------------------------------------------------------------
consensus_6174#0 GCGGTCTATGACCGCTGGAAAGAAAGCAGTAGAAGCAAAAGTAGGCATCTTGCGGTAGAA 483
consensus_6174#1 GTGAACAGGAAAAGGCCTCAGGATGAGTTGCCCGATGCCGGAAATTGGTTCCTGCATCTC 658
consensus_6174#2 ------------------------------------------------------------
consensus_6174#0 GTGAACAGGAAAAGGCCTCAGGATGAGTTGCCCGATGCCGGAAATTGGTTCCTGCATCTC 543
consensus_6174#1 G----------------------------------------------------------- 659
consensus_6174#2 ------------------------------------------------------------
consensus_6174#0 GCTGATATCGAAGGCCGATATCCGCTACGAGGGACTGTTGTTCACCGTTGATCCGGAGCG 603
consensus_6174#1 ------------------------------------------------------------
consensus_6174#2 ------------------------------------------------------------
consensus_6174#0 GTGCACGATCGCCCTTGCTCGAGTGAAGTCGTATGGTACCGAGGATCGGGAGACCCAGTT 663
consensus_6174#1 ---------------------
consensus_6174#2 ---------------------
consensus_6174#0 CCCGATTGCGCCGCAGAACCA 684
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||