cluster # 6183

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Anopheles gambiae
cluster # 6183 cluster # 6183 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6183#0 length = 404 sequences # 3

consensus_6183#1 length = 341 sequences # 2

consensusID : consensus_6183#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 404
fasta sequence

                              [AATATCTCATGTTCTGCATAACGCAAATAAGTAATGCTTGAAATTCGTACGAACGCCTTCTACTAAACCGCTTCATTGCACGCCAGGTAGGTACCGGGCACAGGCACAAATATGTATTCATTGCTGAATTCGGTTTGCACCGCCGCAACCTTGCACAACAGCATGCTGGTGGGAAAAGCGCGCAGCACATGCTGCTCCAAGCTGCTCATGACGGCAGAGTAAATGTGCACTTCGGTCGAACAAAACGGATCGGAGAACGCGGGCACCTGTCTGGTGAAGGTGTACCCATGGACAACCAGACCAAAGTCCTCGAAGTTGGTGGCCCCTTCGTACATCACCACCGCGCCAGTGTTGGTCAAGGCAAACT-GGTCGCGGAAGTTCCGACGCAGCTGGAACCCGCGCCG]

[+] EMBL AGA281777            [AATATCTCATGTTCTGCATAACGCAAATAAGTAATGCTTGAAATTCGTACGAACGCCTTCTACTAAACCGCTTCATTGCACGCCAGGTAGGTACCGGGCACAGGCACAAATATGTATTCATTGCTGAATTCGGTTTGCACCGCCGCAACCTTGCACAACAGCATGCTGGTGGGAAAAGCGCGCAGCACATGCTGCTCCAAGCTGCTCATGACGGCAGAGTAAATGTGCACTTCGGTCGAACAAAACGGATCGGAGAACGCGGGCACCTGTCTGGTGAAGGTGTACCCATGGACAACCAGACCAAAGTCCTCGAAGTTGGTGGCCCCTTCGTACATCACCACCGCGCCAGTGTTGGTCAAGGCAAACT GGTCGCGGAAGTTCCGACGCAGCT             ]
[+] EMBL AGA282708            [                         AATAAGTAATGCTTGAAATTCGTACGAACGCCTTCTACTAAACCGCTTCATTGCACGCCAGGTAGGTACCGGGCACAGGCACAAATATGTATTCATTGCTGAATTCGGTTTGCACCGCCGCAACCTTGCACAACAGCATGCTGGTGGGAAAAGCGCGCAGCACATGCTGCTCCAAGCTGCTCATGACGGCAGAGTAAATGTGCACTTCGGTCGAACAAAACGGATCGGAGAACGCGGGCACCTGTCTGGTGAAGGTGTACCCATGGACAACCAGACCAAAG                                                                                                   ]
[+] EMBL AGA285877            [                                               TACGAACGCCTTCTACTAAACCGCTTCATTGCACGCCAGGTAGGTACCGGGCACAGGCACAAATATGTATTCATTGCTGAATTCGGTTTGCACCGCCGCAACCTTGCACAACAGCATGCTGGTGGGAAAAGCGCGCAGCACATGCTGCTCCAAGCTGCTCATGACGGCAGAGTAAATGTGCACTTCGGTCGAACAAAACGGATCGGAGAACGCGGGCACCTGTCTGGTGAAGGTGTACCCATGGACAACCAGACCAAAGTCCTCGAAGTTGGTGGCCCCTTCGTACATCACCACCGCGCCAGTGTTGGTCAAGGCAAACTGGGTCGCGGAAGTTCCGACGCAGCTGGAACCCGCGCCG]




>consensus_6183#0
AATATCTCATGTTCTGCATAACGCAAATAAGTAATGCTTGAAATTCGTACGAACGCCTTC
TACTAAACCGCTTCATTGCACGCCAGGTAGGTACCGGGCACAGGCACAAATATGTATTCA
TTGCTGAATTCGGTTTGCACCGCCGCAACCTTGCACAACAGCATGCTGGTGGGAAAAGCG
CGCAGCACATGCTGCTCCAAGCTGCTCATGACGGCAGAGTAAATGTGCACTTCGGTCGAA
CAAAACGGATCGGAGAACGCGGGCACCTGTCTGGTGAAGGTGTACCCATGGACAACCAGA
CCAAAGTCCTCGAAGTTGGTGGCCCCTTCGTACATCACCACCGCGCCAGTGTTGGTCAAG
GCAAACTGGTCGCGGAAGTTCCGACGCAGCTGGAACCCGCGCCG

consensusID : consensus_6183#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 341
fasta sequence

                              [CAACTTCGTGGCCGACTACGCGACCGTGTACAGCCCGCGGCTGGTCAACCTGAACGTGCACCATCTGCTGCACATGTACGAGGAGACGTGCCGGTTCGGCGAGCTGCACACCATCTCGGCCTACCCGTTCGTGCCCCGACAGCGCGACGCTAGACGGTTGATGCACTCCGCCGGGTACAGTCTGTCGCAGACGGTCCAACGGCTGCTGGAGCTGCAGCAGGTCGAGCTGAACCGGCGCTGGGATACGACCGACGAGGATGTGCCGTCGGTGCGGACGGTCGGCCTCGACACGATCGCGACCATTCGGCGCGGGTTCCAGCTGCGTCGGAACTTCCGCGACC]

[+] EMBL AGA280080            [CAACTTCGTGGCCGACTACGCGACCGTGTACAGCCCGCGGCTGGTCAACCTGAACGTGCACCATCTGCTGCACATGTACGAGGAGACGTGCCGGTTCGGCGAGCTGCACACCATCTCGGCCTACCCGTTCGTGCCCCGACAGCGCGACGCTAGACGGTTGATGCACTCCGCCGGGTACAGTCTGTCGCAGACGGTCCAACGGCTGCTGGAGCTGCAGCAGGTCGAGCTGAACCGGCGCTGGGATACGACCGACGAGGATGTGCCGTCGGTGCGGACGGTCGGCCTCGACACGATCGCGACCATTCGGCGCGGGTTCCAGCTGCGTCGGAACTTCCGCGACC]
[+] EMBL AGA281080            [CAACTTCGTGGCCGACTACGCGACCGTGTACAGCCCGCGGCTGGTCAACCTGAACGTGCACCATCTGCTGCACATGTACGAGGAGACGTGCCGGTTCGGCGAGCTGCACACCATCTCGGCCTACCCGTTCGTGCCCCGACAGCGCGACGCTAGACGGTTGATGCACTCCGCCGGGTACAGTCTGTCGCAGACGGTCCAACGGCTGCTGGAGCTGCAGCAGGTCGAGCTGAACCGGCGCTGGGATACGACCGACGAGGATGTGCCGTC                                                                          ]




>consensus_6183#1
CAACTTCGTGGCCGACTACGCGACCGTGTACAGCCCGCGGCTGGTCAACCTGAACGTGCA
CCATCTGCTGCACATGTACGAGGAGACGTGCCGGTTCGGCGAGCTGCACACCATCTCGGC
CTACCCGTTCGTGCCCCGACAGCGCGACGCTAGACGGTTGATGCACTCCGCCGGGTACAG
TCTGTCGCAGACGGTCCAACGGCTGCTGGAGCTGCAGCAGGTCGAGCTGAACCGGCGCTG
GGATACGACCGACGAGGATGTGCCGTCGGTGCGGACGGTCGGCCTCGACACGATCGCGAC
CATTCGGCGCGGGTTCCAGCTGCGTCGGAACTTCCGCGACC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6183#0      AATATCTCATGTTCTGCATAACGCAAATAAGTAAT--GCTTGAAATTCGTACGAACGCCT 58
consensus_6183#1      -----------------------CAACTTCGTGGCCGACTACGCGACCGTGTACA-GCCC 36
                                             *** *  **      **       ***    * *** 

consensus_6183#0      TCTACTAAACCGCTTCATTGCACGCCAGGTAGGTACCGGGCACAGGCACAAATATGTATT 118
consensus_6183#1      GCGGCTGGTCAACCTGAACGTGCACCATCTGCTGCACATGTACGAGGAGACGTGCCGGTT 96
                       *  **   *  * * *  *  * ***  *      *  * **  * * *  *     **

consensus_6183#0      CATTG--CTGAATTCGGTTTGCACCGCCGCAACCTTGCAC-AACAGCATGCTGGTGGGAA 175
consensus_6183#1      CGGCGAGCTGCACACCATCTCGGCCTACCCGTTCGTGCCCCGACAGCGCGACGCTAGACG 156
                      *   *  *** *  *  * *   **  * *   * *** *  *****  *  * * *   

consensus_6183#0      AAGCGCGCAGCACATGCTGCTCCAAGCTGCTCATGACGGCAGAGTAAATGT--GCACTTC 233
consensus_6183#1      GTTGATGCACTCCGC-CGGGTACAGTCTGTCGCAGACGGTCCAACGGCTGCTGGAGCTGC 215
                            ***   *   * * * **  ***     *****   *     **   *  ** *

consensus_6183#0      GGTCGAACAAAACGGATCGGAGAACGCGGGCACCTGTCTGGTGAAGGTGTACCCATGGAC 293
consensus_6183#1      AGCAGGTCGAGCTGAACCGG----CGCTGGGATACGACCGACGAGGATGTGCCGTCGGTG 271
                       *  *  * *   * * ***    *** ** *   * * *  ** * *** **   **  

consensus_6183#0      AACCAGACCAAAGTCCTCGAAGT--TGGTGGCCCCTTCGTACA--TCACCACCGCGCCAG 349
consensus_6183#1      ---CGGACGGTCGGCCTCGACACGATCGCGACCATTCGGCGCGGGTTCCAGCTGCGTCGG 328
                         * ***    * ******     * * * **  *  *  *   *  *  * *** * *

consensus_6183#0      TGTTGGTCAAGGCAAACTGGTCGCGGAAGTTCCGACGCAGCTGGAACCCGCGCCG 404
consensus_6183#1      AACTT-CCGCGACC----------------------------------------- 341
                         *   *  * *