cluster # 619

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Anopheles gambiae
cluster # 619 cluster # 619 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_619#0 length = 707 sequences # 1

consensus_619#1 length = 665 sequences # 1

consensusID : consensus_619#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 707
fasta sequence

                              [CCGCGGACGCGTGGGCGGTAATTGAGGACATTGATCTGTCCGATGGGGTGTCGACCAATTTCAGCAACGTGGTCGCTGCCGCCGCAGCAGCCATGAATGTAGTCTCCTCTGGTCAGCAGCAACAGCAGCAGCAACAACAACAGCAACAACAGCAAACGACGACCATAGCGGGAAGCAAAATGTCATCGGACGTGGATAACAATGGATCTCAAAGTGACGACGATGATGGTGATATGATGGACGAGGGCGGAGATGAGGGTAGTGGCGACCTGGGGCACGATGATGACGGCGAACACATCACAAAGTACAACACGAAGATGCTGAAGCTGAAGAAGGACAGTGGACCGATGGCTGGGGCGAAGCTGCTGAACGCATCGGTTGGCGACAGCAAGTACGCGCTGCTAGCGAATCCAAACATTATGCGAAATTTCGAATACACGGTAAATGAATCGACCGGGGTAAGTGATACGGATGACGGCGAGGTACGCCAGTATGTGTGCAGACACTGTGGGAAGCGATACCGCTGGAAGTCAACCTTGCGGCGTCACGAAAATGTCGAGTGCGGTGGCAAGGAAGCGTCGCACCAGTGTCCCTACTGCAGCTACAAGGCGAAACAGCGCGGCAATCTCGGTGTGCACATACGCAAGCATCATTCGGAGATGCCGCAGCTGGAGAGCCGCCGTAGGTCGAACAAGTCGCGCCATTCG]

[+] EMBL BM620741             [CCGCGGACGCGTGGGCGGTAATTGAGGACATTGATCTGTCCGATGGGGTGTCGACCAATTTCAGCAACGTGGTCGCTGCCGCCGCAGCAGCCATGAATGTAGTCTCCTCTGGTCAGCAGCAACAGCAGCAGCAACAACAACAGCAACAACAGCAAACGACGACCATAGCGGGAAGCAAAATGTCATCGGACGTGGATAACAATGGATCTCAAAGTGACGACGATGATGGTGATATGATGGACGAGGGCGGAGATGAGGGTAGTGGCGACCTGGGGCACGATGATGACGGCGAACACATCACAAAGTACAACACGAAGATGCTGAAGCTGAAGAAGGACAGTGGACCGATGGCTGGGGCGAAGCTGCTGAACGCATCGGTTGGCGACAGCAAGTACGCGCTGCTAGCGAATCCAAACATTATGCGAAATTTCGAATACACGGTAAATGAATCGACCGGGGTAAGTGATACGGATGACGGCGAGGTACGCCAGTATGTGTGCAGACACTGTGGGAAGCGATACCGCTGGAAGTCAACCTTGCGGCGTCACGAAAATGTCGAGTGCGGTGGCAAGGAAGCGTCGCACCAGTGTCCCTACTGCAGCTACAAGGCGAAACAGCGCGGCAATCTCGGTGTGCACATACGCAAGCATCATTCGGAGATGCCGCAGCTGGAGAGCCGCCGTAGGTCGAACAAGTCGCGCCATTCG]




>consensus_619#0
CCGCGGACGCGTGGGCGGTAATTGAGGACATTGATCTGTCCGATGGGGTGTCGACCAATT
TCAGCAACGTGGTCGCTGCCGCCGCAGCAGCCATGAATGTAGTCTCCTCTGGTCAGCAGC
AACAGCAGCAGCAACAACAACAGCAACAACAGCAAACGACGACCATAGCGGGAAGCAAAA
TGTCATCGGACGTGGATAACAATGGATCTCAAAGTGACGACGATGATGGTGATATGATGG
ACGAGGGCGGAGATGAGGGTAGTGGCGACCTGGGGCACGATGATGACGGCGAACACATCA
CAAAGTACAACACGAAGATGCTGAAGCTGAAGAAGGACAGTGGACCGATGGCTGGGGCGA
AGCTGCTGAACGCATCGGTTGGCGACAGCAAGTACGCGCTGCTAGCGAATCCAAACATTA
TGCGAAATTTCGAATACACGGTAAATGAATCGACCGGGGTAAGTGATACGGATGACGGCG
AGGTACGCCAGTATGTGTGCAGACACTGTGGGAAGCGATACCGCTGGAAGTCAACCTTGC
GGCGTCACGAAAATGTCGAGTGCGGTGGCAAGGAAGCGTCGCACCAGTGTCCCTACTGCA
GCTACAAGGCGAAACAGCGCGGCAATCTCGGTGTGCACATACGCAAGCATCATTCGGAGA
TGCCGCAGCTGGAGAGCCGCCGTAGGTCGAACAAGTCGCGCCATTCG

consensusID : consensus_619#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 665
fasta sequence

                              [CCGGTGGCCGGAACCGAGCGACAGTTGTTGAACTTTTCGTTGTCACGTAAACTGGGATCCGCAGGGCAACAGTCCCAGCAGCACGTCACGATCACTGGTGCAGGACCTCCCGGCCTGACGACGATCAATGCTTCGACCCTACAGCAGATCCCGATAGCTGCAGCCATAAGTGGTGCTAATGCACGCGGTGGCTCGGTGACTACCCGCTACACGGTGAACGAATACGAAACGTCGGGCTCTAACACGTCCCAGAGCGCTGACTTCCCGCCTGGAATGATCGACGATCTCGATTACTCGGTAATTGAGGACATTGATCTGTCCGATGGGGTGTCGACCAATTTCAGCAACGTGGTCGCTGCCGCCGCCGCAGCAGCCATGAATGTAGTCTCCTCTGGTCAGCAGCAACAGCAGCAGCAACAACAACAGCAACAACAGCAAACGACGACCATAGCGGGAAGCAAAATGTCATCGGACGTGGATAACAATGGATCTCAAAGTGACGACGATGATGGTGATATGATGGACGAGGGCGGAGATGAGGGTAGTGGCGACCTGGGGCACGATGACGACGGCGAACACATCACAAAGTACAACACGAAGATGCTGAAGCTGAAGAAGGACAGTGGACCGATGGCTGGGGCGAAGCTGCTGAACGCATCGGTTGG]

[+] EMBL BM638704             [CCGGTGGCCGGAACCGAGCGACAGTTGTTGAACTTTTCGTTGTCACGTAAACTGGGATCCGCAGGGCAACAGTCCCAGCAGCACGTCACGATCACTGGTGCAGGACCTCCCGGCCTGACGACGATCAATGCTTCGACCCTACAGCAGATCCCGATAGCTGCAGCCATAAGTGGTGCTAATGCACGCGGTGGCTCGGTGACTACCCGCTACACGGTGAACGAATACGAAACGTCGGGCTCTAACACGTCCCAGAGCGCTGACTTCCCGCCTGGAATGATCGACGATCTCGATTACTCGGTAATTGAGGACATTGATCTGTCCGATGGGGTGTCGACCAATTTCAGCAACGTGGTCGCTGCCGCCGCCGCAGCAGCCATGAATGTAGTCTCCTCTGGTCAGCAGCAACAGCAGCAGCAACAACAACAGCAACAACAGCAAACGACGACCATAGCGGGAAGCAAAATGTCATCGGACGTGGATAACAATGGATCTCAAAGTGACGACGATGATGGTGATATGATGGACGAGGGCGGAGATGAGGGTAGTGGCGACCTGGGGCACGATGACGACGGCGAACACATCACAAAGTACAACACGAAGATGCTGAAGCTGAAGAAGGACAGTGGACCGATGGCTGGGGCGAAGCTGCTGAACGCATCGGTTGG]




>consensus_619#1
CCGGTGGCCGGAACCGAGCGACAGTTGTTGAACTTTTCGTTGTCACGTAAACTGGGATCC
GCAGGGCAACAGTCCCAGCAGCACGTCACGATCACTGGTGCAGGACCTCCCGGCCTGACG
ACGATCAATGCTTCGACCCTACAGCAGATCCCGATAGCTGCAGCCATAAGTGGTGCTAAT
GCACGCGGTGGCTCGGTGACTACCCGCTACACGGTGAACGAATACGAAACGTCGGGCTCT
AACACGTCCCAGAGCGCTGACTTCCCGCCTGGAATGATCGACGATCTCGATTACTCGGTA
ATTGAGGACATTGATCTGTCCGATGGGGTGTCGACCAATTTCAGCAACGTGGTCGCTGCC
GCCGCCGCAGCAGCCATGAATGTAGTCTCCTCTGGTCAGCAGCAACAGCAGCAGCAACAA
CAACAGCAACAACAGCAAACGACGACCATAGCGGGAAGCAAAATGTCATCGGACGTGGAT
AACAATGGATCTCAAAGTGACGACGATGATGGTGATATGATGGACGAGGGCGGAGATGAG
GGTAGTGGCGACCTGGGGCACGATGACGACGGCGAACACATCACAAAGTACAACACGAAG
ATGCTGAAGCTGAAGAAGGACAGTGGACCGATGGCTGGGGCGAAGCTGCTGAACGCATCG
GTTGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_619#0      ------------------------------------------------------------
consensus_619#1      CCGGTGGCCGGAACCGAGCGACAGTTGTTGAACTTTTCGTTGTCACGTAAACTGGGATCC 60
                                                                                 

consensus_619#0      ------------------------------------------------------------
consensus_619#1      GCAGGGCAACAGTCCCAGCAGCACGTCACGATCACTGGTGCAGGACCTCCCGGCCTGACG 120
                                                                                 

consensus_619#0      ------------------------------------------------------------
consensus_619#1      ACGATCAATGCTTCGACCCTACAGCAGATCCCGATAGCTGCAGCCATAAGTGGTGCTAAT 180
                                                                                 

consensus_619#0      ------------------------------------------------------------
consensus_619#1      GCACGCGGTGGCTCGGTGACTACCCGCTACACGGTGAACGAATACGAAACGTCGGGCTCT 240
                                                                                 

consensus_619#0      --------------------------------------CCGCGGACGCG--TGGGCGGTA 20
consensus_619#1      AACACGTCCCAGAGCGCTGACTTCCCGCCTGGAATGATCGACGATCTCGATTACTCGGTA 300
                                                           *  **  * **  *   *****

consensus_619#0      ATTGAGGACATTGATCTGTCCGATGGGGTGTCGACCAATTTCAGCAACGTGGTCGCTGCC 80
consensus_619#1      ATTGAGGACATTGATCTGTCCGATGGGGTGTCGACCAATTTCAGCAACGTGGTCGCTGCC 360
                     ************************************************************

consensus_619#0      GCCGC---AGCAGCCATGAATGTAGTCTCCTCTGGTCAGCAGCAACAGCAGCAGCAACAA 137
consensus_619#1      GCCGCCGCAGCAGCCATGAATGTAGTCTCCTCTGGTCAGCAGCAACAGCAGCAGCAACAA 420
                     *****   ****************************************************

consensus_619#0      CAACAGCAACAACAGCAAACGACGACCATAGCGGGAAGCAAAATGTCATCGGACGTGGAT 197
consensus_619#1      CAACAGCAACAACAGCAAACGACGACCATAGCGGGAAGCAAAATGTCATCGGACGTGGAT 480
                     ************************************************************

consensus_619#0      AACAATGGATCTCAAAGTGACGACGATGATGGTGATATGATGGACGAGGGCGGAGATGAG 257
consensus_619#1      AACAATGGATCTCAAAGTGACGACGATGATGGTGATATGATGGACGAGGGCGGAGATGAG 540
                     ************************************************************

consensus_619#0      GGTAGTGGCGACCTGGGGCACGATGATGACGGCGAACACATCACAAAGTACAACACGAAG 317
consensus_619#1      GGTAGTGGCGACCTGGGGCACGATGACGACGGCGAACACATCACAAAGTACAACACGAAG 600
                     ************************** *********************************

consensus_619#0      ATGCTGAAGCTGAAGAAGGACAGTGGACCGATGGCTGGGGCGAAGCTGCTGAACGCATCG 377
consensus_619#1      ATGCTGAAGCTGAAGAAGGACAGTGGACCGATGGCTGGGGCGAAGCTGCTGAACGCATCG 660
                     ************************************************************

consensus_619#0      GTTGGCGACAGCAAGTACGCGCTGCTAGCGAATCCAAACATTATGCGAAATTTCGAATAC 437
consensus_619#1      GTTGG------------------------------------------------------- 665
                     *****                                                       

consensus_619#0      ACGGTAAATGAATCGACCGGGGTAAGTGATACGGATGACGGCGAGGTACGCCAGTATGTG 497
consensus_619#1      ------------------------------------------------------------
                                                                                 

consensus_619#0      TGCAGACACTGTGGGAAGCGATACCGCTGGAAGTCAACCTTGCGGCGTCACGAAAATGTC 557
consensus_619#1      ------------------------------------------------------------
                                                                                 

consensus_619#0      GAGTGCGGTGGCAAGGAAGCGTCGCACCAGTGTCCCTACTGCAGCTACAAGGCGAAACAG 617
consensus_619#1      ------------------------------------------------------------
                                                                                 

consensus_619#0      CGCGGCAATCTCGGTGTGCACATACGCAAGCATCATTCGGAGATGCCGCAGCTGGAGAGC 677
consensus_619#1      ------------------------------------------------------------
                                                                                 

consensus_619#0      CGCCGTAGGTCGAACAAGTCGCGCCATTCG 707
consensus_619#1      ------------------------------