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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6202#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1070 fasta sequence
[TTTTGTTTGCATCTCCACGTATGTTGTTTAAAGCGTTAGATTATGGAGATCTAACTTACGAATAATATCTTTTGCTTTGTTCAAAGTATGGCCCTGCGTACTACTATCTGCCATTTGATGCAATTTTTCCAAATACTGATCAATATTGTCGATTGTGGCTCCGGAATATTCGCTGGCAAGTGGTAAACCCTGCAGTGCATTAGCCAGTTCGGCACGTAACTTTTTTAGATAATTCTCTAAAACAACATTCTGTGCTTCCAGGCTACTTTTTTCGCCATCTAGCTTTTGAATACCATTTTCCATGTTTTCGACGTGCTTCTCAAGAACCGAATTCTGCTGTTCATAATCTATATTAGATTTGCGCAACGTGCGCA-CTCCGAGTCGATGGTTTTGTTGTGATCAAGAAAGTCCTCCGTAAAAATGGGTATATCGTAATCGCCTTGGCGAGCCACTTTTTGTTCTACCTTGCCATTAACATATGGAATAGACGATATGACTACTTTTGG--CCCCGTCACCTCTTTTTTTGCTACTTGCGACTCGTTCTGTAACGCTTTAGCTTTCGCTTCATTGTTCAGTTTGTACTCTGATATTTCCTTATTGTACCGTTCTTTGTCAACCTCTGCGGCTTCTAGATACGGTTTCTTTCTCTCTTCTGACAATTTGGACCATTCTTCGGCCATTATTTTCGTTACCTCGATGGGCGTCAAATTGGGGTGTTTCTGGCGCACTCCTTCGCGGTGCTTGTTCATGTACCGAACGTATCCAGTAAGCGGATGTTTCGGTGCATTTGCAT-CTTCGGAGCTTTTTGCCTTTTTTTCTTCGTGGTCTTCGGTGCCGACTGTTTACCCTTTGTTCCACTGCCGGACGGTGAACGCGTTGCTTGTTTCAGGGGCTTTTCCTTCATTTTTACCTGCATCCGTTGGTTTCAATTCCTGCTTCAAATCATCCTGATTGGCTACTGCTGACTTTTTATCTAATCCTTCCGGTTTTTCCTTTTCCATTGAAAGCGAAACTGTTGATAAAATTGGTAATCCTTTTCCCTGCTGTTTTGTTTGTATGCACACCCAGTA]
[+] EMBL CNS09G35 [TTTTGTTTGCATCTCCACGTATGTTGTTTAAAGCGTTAGATTATGGAGATCTAACTTACGAATAATATCTTTTGCTTTGTTCAAAGTATGGCCCTGCGTACTACTATCTGCCATTTGATGCAATTTTTCCAAATACTGATCAATATTGTCGATTGTGGCTCCGGAATATTCGCTGGCAAGTGGTAAACCCTGCAGTGCATTAGCCAGTTCGGCACGTAACTTTTTTAGATAATTCTCTAAAACAACATTCTGTGCTTCCAGGCTACTTTTTTCGCCATCTAGCTTTTGAATACCATTTTCCATGTTTTCGACGTGCTTCTCAAGAACCGAATTCTGCTGTTCATAATCTATATTAGATTTGCGCAACGTGCGCA CTCCGAGTCGATGGTTTTGTTGTGATCAAGAAAGTCCTCCGTAAAAATGGGTATATCGTAATCGCCTTGGCGAGCCACTTTTTGTTCTACCTTGCCATTAACATATGGAATAGACGATATGACTACTTTTGG CCCCGTCACCTCTTTTTTTGCTACTTGCGACTCGTTCTGTAACGCTTTAGCTTTCGCTTCATTGTTCAGTTTGTACTCTGATATTTCCTTATTGTACCGTTCTTTGTCAACCTCTGCGGCTTCTAGATACGGTTTCTTTCTCTCTTCTGACAATTTGGACCATTCTTCGGCCATTATTTTCGTTACCTCGATGGGCGTAAAATTGGGGTGTTTCTGGCGCACTCCTTCGCGGTGCTTG ]
[+] EMBL CNS09PSZ [ AGCGTTAGATTATGGAGATCTAACTTACGAATAATATCTTTTGCTTTGTTCAAAGTATGGCCCTGCGTACTACTATCTGCCATTTGATGCAATTTTTCCAAATACTGATCAATATTGTCGATTGTGGCTCCGGAATATTCGCTGGCAAGTGGTAAACCCTGCAGTGCATTAGCCAGTCCGGCACGTAACTTTTTTAGATAATTCTCTAAAACAACATTCTGTGCTTCCAGGCTACTTTTTTCGCCATCTAGCTTTTGAATACCATTTTCCATGTTTTCGACGTGCTTCTCAAGAACCGAATTCTGCTGTTCATAATCTATATTAGATTTGCGCAACGTGCGCA CTCCGAGTCGATGGTTTTGTTGTGATCAAGAAAGTCCTCCGTAAAAATGGGTATATCGTAATCGCCTTGGCGAGCCACTTTTTGTTCTACCTTGCCATTAACATATGGAATAGACGATATGACTACTTTTGG CCCCGTCACCTCTTTTTTTGCTACTTGCGACTCGTTCTGTAACGCTTTAGCTTTCGCTTCATTGTTCAGTTTGTACTCTGATATTTCCTTATTGTACCGTTCTTTGTCAACCTCTGCGGCTTCTAGATACGGTTTCTTTCTCTCTTCTGACAATTTGGACCATTCTTCGGCCATTATTTTCGTTACCTCGATGGGCGTCAAATTGGGGTGTTTCTGGCGCACTCCTTCGCGGTGCTCGTTCATGTACCGAACGTATCCAGTAAGCGGATGTTTCGGTGCATTTGCATCCTTCGGAGCTTTTTGCCTTTTTTTCTTCGTGGTCTTCGGTGCCGACTGTTTACCCTTTGTTCCACTGCC ]
[-] EMBL CNS09PSY [ ACTTTTTTAGATAATTCTCTAAAACAACATTCTGTGCTTCCAGGCTACTTTTTTCGCCATCTAGCTTTTGAATACCATTTTCCATGTTTTCGACGTGCTTCTCAAGAACCGAATTCTGCTGTTCATAATCTATATTAGATTTGCGCAACGTGCGCAGCTCCGAGTCGATGGTTTTGTTGTGATCAAGAAAGTCCTCCGTAAAAATGGGTATATCGTAATCGCCTTGGCGAGCCACTTTTTGTTCTACCTTGCCATTAACATATGGAATAGACGATATGACTACTTTTGGACCCCCGTCACCTCTTTTTTTGCTACTTGCGACTCGTTCTGTAACGCTTTAGCTTTCGCTTCATTGTTCAGTTTGTACTCTGATATTTCCTTATTGTACCGTTCTTTGTCAACCTCTGCGGCTTCTAGATACGGTTTCTTTCTCTCTTCTGACAATTTGGACCATTCTTCGGCCATTATTTTCGTTACCTCGATGGGCGTCAAATTGGGGTGTTTCTGGCGCACTCCTTCGCGGTGCTCGTTCATGTACCGAACGTATCCAGTAAGCGGATGTTTCGGTGCATTTGCAT CTTCGGAGCTTTTTGCCTTTTTTTCTTCGTGGTCTTCGGTGCCGACTGTTTACCCTTTGTTCCACTGCCGGACGGTGAACGCGTTGCTTGTTTCAGGGGCTTTTCCTTCATTTTTACCTGCATCCGTTGGTTTCAATTCCTGCTTCAAATCATCCTGATTGGCTACTGCTGACTTTTTATCTAATCCTTCCGGTTTTTCCTTTTCCATTGAAAGCGAAACTGTTGATAAAATTGGTAATCCTTTTCCCTGC ]
[-] EMBL CNS09G34 [ TAATCGCCTTGGCGAGCCACTTTTTGTTCTACCTTGCCATTAACATATGGAATAGACGATATGACTACTTTTGG CCCCGTCACCTCTTTTTTTGCTACTTGCGACTCGTTCTGTAACGCTTTAGC TTCGCTTCATTGTTCAGTTTGTACTCTGATATTTCCTTATTGTACCGTTCTTTGTCAACCTCTGCGGCTTCTAGATACGGTTTCTTTCTCTCTTCTGACAATTTGGACCATTCTTCGGCCATTATTTTCGTTACCTCGATGGGCGTCAAATTGGGGTGTTTCTGGCGCACTCCTTCGCGGTGCTTGTTCATGTACCGAACGTATCCAGTAAGCGGATGTTTCGGTGCATTTGCAT CTTCGGAGCTTTTTGCCTTTTTTTCTTCGTGGTCTTCGGTGCCGACTGTTTACCCTTTGTTCCACTGCCGGACGGTGAACGCGTTGCTTGTTTCAGGGGCTTTTCCTTCATTTTTACCTGCATCCGTTGGTTTCAATTCCTGCTTCAAATCATCCTGATTGGCTACTGCTGACTTTTTATCTAATCCTTCCGGTTTTTCCTTTTCCATTGAAGGCGAAACTGTTGATAAAATTGGTAATCCTTTTCCCTGCTGTTTTGTTTGTATGCACACCCAGTA]
consensusID : consensus_6202#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 685 fasta sequence
[GTTTAAAGCGTTAGATTATGGAGATCTAACTTACGGAATAATATCTTTTGCTTTGTTCAAAGTATGGCCCTGCGTACTACTATCTGCCATTTGATGCAATTTCTCCAAATACTGATCAATATTGTCGATTGTGGCTCCGGAGTATTCGCTGGCAAGAGGTAAACCCTGCAGTGCATTAGACAGTGCGGCACGTAACTTTTTTAGATAATTCTCTAAAACAACATTCTGTGCTTCCAGGCTATTTTTTCGCCATCTAGCTTTTGAATACCATTTTCCATGTTTTCGACGTGTTTCTCAAGAACCGAATTCTGCTGTTCATAATCTATATTAGATTTGCGCAACGTGCGCAGCTCCGAGTCGATGATTTTGTTGTGATCAAGAAAGTCCTCCGTAAAAATGGGTATATCGTAATCGCCTTGGCGAGCCACTTTTTGTTCTACCTTGCCATTAACATATGGAATAGACGATATGACTACTTTTGGCCCCGTCACCTCTTTTTTTGCTACTTGCGACTCGTTCTGTAACGCTTTAGCTTTCGCTTCATTGTTCAGTTTGTACTCTGATATTTCCTTATTGTACCGTTCTTTGTCAACCTCTGCGGCTTCTAGATACGGTTTCTTTCTCTCTTCTGACAATTTGGACCATTCTTCGGCCATTATTTTCGTTACCTCGGACGCGTGGGCGG]
[-] EMBL BM607776 [GTTTAAAGCGTTAGATTATGGAGATCTAACTTACGGAATAATATCTTTTGCTTTGTTCAAAGTATGGCCCTGCGTACTACTATCTGCCATTTGATGCAATTTCTCCAAATACTGATCAATATTGTCGATTGTGGCTCCGGAGTATTCGCTGGCAAGAGGTAAACCCTGCAGTGCATTAGACAGTGCGGCACGTAACTTTTTTAGATAATTCTCTAAAACAACATTCTGTGCTTCCAGGCTATTTTTTCGCCATCTAGCTTTTGAATACCATTTTCCATGTTTTCGACGTGTTTCTCAAGAACCGAATTCTGCTGTTCATAATCTATATTAGATTTGCGCAACGTGCGCAGCTCCGAGTCGATGATTTTGTTGTGATCAAGAAAGTCCTCCGTAAAAATGGGTATATCGTAATCGCCTTGGCGAGCCACTTTTTGTTCTACCTTGCCATTAACATATGGAATAGACGATATGACTACTTTTGGCCCCGTCACCTCTTTTTTTGCTACTTGCGACTCGTTCTGTAACGCTTTAGCTTTCGCTTCATTGTTCAGTTTGTACTCTGATATTTCCTTATTGTACCGTTCTTTGTCAACCTCTGCGGCTTCTAGATACGGTTTCTTTCTCTCTTCTGACAATTTGGACCATTCTTCGGCCATTATTTTCGTTACCTCGGACGCGTGGGCGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6202#0 TTTTGTTTGCATCTCCACGTATGTTGTTTAAAGCGTTAGATTATGGAGATCTAACTTACG 60
consensus_6202#1 -------------------------GTTTAAAGCGTTAGATTATGGAGATCTAACTTACG 35
***********************************
consensus_6202#0 -AATAATATCTTTTGCTTTGTTCAAAGTATGGCCCTGCGTACTACTATCTGCCATTTGAT 119
consensus_6202#1 GAATAATATCTTTTGCTTTGTTCAAAGTATGGCCCTGCGTACTACTATCTGCCATTTGAT 95
***********************************************************
consensus_6202#0 GCAATTTTTCCAAATACTGATCAATATTGTCGATTGTGGCTCCGGAATATTCGCTGGCAA 179
consensus_6202#1 GCAATTTCTCCAAATACTGATCAATATTGTCGATTGTGGCTCCGGAGTATTCGCTGGCAA 155
******* ************************************** *************
consensus_6202#0 GTGGTAAACCCTGCAGTGCATTAGCCAGTTCGGCACGTAACTTTTTTAGATAATTCTCTA 239
consensus_6202#1 GAGGTAAACCCTGCAGTGCATTAGACAGTGCGGCACGTAACTTTTTTAGATAATTCTCTA 215
* ********************** **** ******************************
consensus_6202#0 AAACAACATTCTGTGCTTCCAGGCTACTTTTTTCGCCATCTAGCTTTTGAATACCATTTT 299
consensus_6202#1 AAACAACATTCTGTGCTTCCAGGCTA-TTTTTTCGCCATCTAGCTTTTGAATACCATTTT 274
************************** *********************************
consensus_6202#0 CCATGTTTTCGACGTGCTTCTCAAGAACCGAATTCTGCTGTTCATAATCTATATTAGATT 359
consensus_6202#1 CCATGTTTTCGACGTGTTTCTCAAGAACCGAATTCTGCTGTTCATAATCTATATTAGATT 334
**************** *******************************************
consensus_6202#0 TGCGCAACGTGCGCA-CTCCGAGTCGATGGTTTTGTTGTGATCAAGAAAGTCCTCCGTAA 418
consensus_6202#1 TGCGCAACGTGCGCAGCTCCGAGTCGATGATTTTGTTGTGATCAAGAAAGTCCTCCGTAA 394
*************** ************* ******************************
consensus_6202#0 AAATGGGTATATCGTAATCGCCTTGGCGAGCCACTTTTTGTTCTACCTTGCCATTAACAT 478
consensus_6202#1 AAATGGGTATATCGTAATCGCCTTGGCGAGCCACTTTTTGTTCTACCTTGCCATTAACAT 454
************************************************************
consensus_6202#0 ATGGAATAGACGATATGACTACTTTTGGCCCCGTCACCTCTTTTTTTGCTACTTGCGACT 538
consensus_6202#1 ATGGAATAGACGATATGACTACTTTTGGCCCCGTCACCTCTTTTTTTGCTACTTGCGACT 514
************************************************************
consensus_6202#0 CGTTCTGTAACGCTTTAGCTTTCGCTTCATTGTTCAGTTTGTACTCTGATATTTCCTTAT 598
consensus_6202#1 CGTTCTGTAACGCTTTAGCTTTCGCTTCATTGTTCAGTTTGTACTCTGATATTTCCTTAT 574
************************************************************
consensus_6202#0 TGTACCGTTCTTTGTCAACCTCTGCGGCTTCTAGATACGGTTTCTTTCTCTCTTCTGACA 658
consensus_6202#1 TGTACCGTTCTTTGTCAACCTCTGCGGCTTCTAGATACGGTTTCTTTCTCTCTTCTGACA 634
************************************************************
consensus_6202#0 ATTTGGACCATTCTTCGGCCATTATTTTCGTTACCTCGATGGGCGTCAAATTGGGGTGTT 718
consensus_6202#1 ATTTGGACCATTCTTCGGCCATTATTTTCGTTACCTCG---GACGCGTGGGCGG------ 685
************************************** * ** **
consensus_6202#0 TCTGGCGCACTCCTTCGCGGTGCTTGTTCATGTACCGAACGTATCCAGTAAGCGGATGTT 778
consensus_6202#1 ------------------------------------------------------------
consensus_6202#0 TCGGTGCATTTGCATCTTCGGAGCTTTTTGCCTTTTTTTCTTCGTGGTCTTCGGTGCCGA 838
consensus_6202#1 ------------------------------------------------------------
consensus_6202#0 CTGTTTACCCTTTGTTCCACTGCCGGACGGTGAACGCGTTGCTTGTTTCAGGGGCTTTTC 898
consensus_6202#1 ------------------------------------------------------------
consensus_6202#0 CTTCATTTTTACCTGCATCCGTTGGTTTCAATTCCTGCTTCAAATCATCCTGATTGGCTA 958
consensus_6202#1 ------------------------------------------------------------
consensus_6202#0 CTGCTGACTTTTTATCTAATCCTTCCGGTTTTTCCTTTTCCATTGAAAGCGAAACTGTTG 1018
consensus_6202#1 ------------------------------------------------------------
consensus_6202#0 ATAAAATTGGTAATCCTTTTCCCTGCTGTTTTGTTTGTATGCACACCCAGTA 1070
consensus_6202#1 ----------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||