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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6228#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 686 fasta sequence
[AGGCCAGAATCGGCACGNGGCCAAACGAGACGATGCGCCGTCTCAATCGAAAAGGGATAACATTGGAGAAAGCTACACTGAGCCACAGCAGCCGCGCGTAATTGTCCTGGACTGAGGGTGCCACGCGAAAGAAACGCTCTAACGAAAGAGGTAAAGAACGCTTCCGTTCCCTTCACCTCTTTTTGTTTTTTATAGCGCGCAGTAAGGTAGGCCAAATAAATGAAGATACCTCAAAACACGATGCCACGCGCAACCGGTGCGCGGTTTGAACCTGCTTACCGCAAACACCGCGCACAAGCGCGCACTACGAAAACGAAATGAAACTAAACGAATGAAAAAAAAGCAGCGCAACTAAACGCGCGACAAGATACGAACCCCCCCCTCCCGNCACGAATCATCTTGTAAAGCAGGCAATGAGATGGATGTAAGATCGTGTGACAAAACGACACGATCCGACACCCGCGTAATGACTGAATAACTAACTCAAAAGCTGCGCTTGTTGTCCCTGTCCCAGATGCTACTCTCGACATGCGAAACTATGGGCACGCTAGCGATATGGCGAAGAGGTGTTGTTTCGCCGCCACTTCGTGTTGAGTGGCCCCCGTGCCATAAGCACGATGTAAAACGGCTTTNTGAATTTGAACCGGTGCACATGGCTACTGCTGTGCGTCTCGCGAGGGGCACGG]
[+] EMBL BX467928 [AGGCCAGAATCGGCACGNGGCCAAACGAGACGATGCGCCGTCTCAATCGAAAAGGGATAACATTGGAGAAAGCTACACTGAGCCACAGCAGCCGCGCGTAATTGTCCTGGACTGAGGGTGCCACGCGAAAGAAACGCTCTAACGAAAGAGGTAAAGAACGCTTCCGTTCCCTTCACCTCTTTTTGTTTTTTATAGCGCGCAGTAAGGTAGGCCAAATAAATGAAGATACCTCAAAACACGATGCCACGCGCAACCGGTGCGCGGTTTGAACCTGCTTACCGCAAACACCGCGCACAAGCGCGCACTACGAAAACGAAATGAAACTAAACGAATGAAAAAAAAGCAGCGCAACTAAACGCGCGACAAGATACGAACCCCCCCCTCCCGNCACGAATCATCTTGTAAAGCAGGCAATGAGATGGATGTAAGATCGTGTGACAAAACGACACGATCCGACACCCGCGTAATGACTGAATAACTAACTCAAAAGCTGCGCTTGTTGTCCCTGTCCCAGATGCTACTCTCGACATGCGAAACTATGGGCACGCTAGCGATATGGCGAAGAGGTGTTGTTTCGCCGCCACTTCGTGTTGAGTGGCCCCCGTGCCATAAGCACGATGTAAAACGGCTTTNTGAATTTGAACCGGTGCACATGGCTACTGCTGTGCGTCTCGCGAGGGGCACGG]
consensusID : consensus_6228#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 610 fasta sequence
[CCGTACGAAATGATGAACAGTTGCCCAGCAGCAACGCAACAGCAGCAACGCAACCACTCGATCACGTGTTTCTTTTAGGGCAGTTTATTTGAAAAGTGCGTTTTTTGTTTGTTTGTTATCCTTTCTTCACACATTGGAAGAATCGAAAGAGCGAAGATGATCGCGAGGGTCGCAAAAATACCCTCCTCCTTCCGTGAGGATCATGTACACCGATCATGGCTAGCGACGAAGCAGGCAAGAGCACCGCATACGTAGTATATGCATCATTTCCACGAAATGAGAATGACTTGACGTAGCAAGAACAAACACATCACACACAAACGCGCGCGCGAGCTAATGATTGAAGGTAGTATTAGAGCAGCAGACGTTGATCGTAGCAGATCAACTGCTAAGGGGTATGCATGAAAGACGCATTTACCAAATGAGACGATGCGCCGTTCACTCGAAAGGGGTAACACTGGAGAAAACCACACTGAGCCACAACAGCCGCGCGTAATTGTCCGGGTACTGAGGGGTGCCACGAGAAAGAAACGCTCTAACGAAAGAGGCAAAGAACGCTTCCGTTCCCTTCACCTCTTTATTCTTATTGCGCGCAGAAGGGTAGGCCAAA]
[+] EMBL BM611107 [CCGTACGAAATGATGAACAGTTGCCCAGCAGCAACGCAACAGCAGCAACGCAACCACTCGATCACGTGTTTCTTTTAGGGCAGTTTATTTGAAAAGTGCGTTTTTTGTTTGTTTGTTATCCTTTCTTCACACATTGGAAGAATCGAAAGAGCGAAGATGATCGCGAGGGTCGCAAAAATACCCTCCTCCTTCCGTGAGGATCATGTACACCGATCATGGCTAGCGACGAAGCAGGCAAGAGCACCGCATACGTAGTATATGCATCATTTCCACGAAATGAGAATGACTTGACGTAGCAAGAACAAACACATCACACACAAACGCGCGCGCGAGCTAATGATTGAAGGTAGTATTAGAGCAGCAGACGTTGATCGTAGCAGATCAACTGCTAAGGGGTATGCATGAAAGACGCATTTACCAAATGAGACGATGCGCCGTTCACTCGAAAGGGGTAACACTGGAGAAAACCACACTGAGCCACAACAGCCGCGCGTAATTGTCCGGGTACTGAGGGGTGCCACGAGAAAGAAACGCTCTAACGAAAGAGGCAAAGAACGCTTCCGTTCCCTTCACCTCTTTATTCTTATTGCGCGCAGAAGGGTAGGCCAAA]
[+] EMBL BM622680 [ GTTTATTTGAAAAGTGCGTTTTTTGTTTGTTTGTTATCCTTTCTTCACACATTGGAAGAATCGAAAGAGCGAAGATGATCGCGAGGGTCGCAAAAATACCCTCCTCCTTCCGTGAGGATCATGTACACCGATCATGGCTAGCGACGAAGCAGGCAAGAGCACCGCATACGTAGTATATGCATCATTTCCACGAAATGAGAATGACTTGACGTAGCAAGAACAAACACATCACACACAAACGCGCGCGCGAGCTAATGATTGAAGGTAGTATTAGAGCAGCAGACGTTGATCGTAGCAGATCAACTGCTAAGGGGTATGCATGAAAGACGCATTTACCAAATGAGACGATGCGCCGTTCACTCGAAAGGGGTAACACTGGAGAAAACCACACTGAGCCACAACAGCCGCGCGTAATTGTCCGGG ACTGAGGGGTGCCACGAGAA ]
consensusID : consensus_6228#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 572 fasta sequence
[CCGCGCTTCATGATGTACAGCAGCAATGAGATGGCTTACATCCGGTGTGTTCGGGCCGGTGACAAAACGACACGATCGAGACACCCGCGTAATGACTGAATAACTAACTCAAAACTGCGCTTGTTGTCCCTTTCCCCCGATGCTACTCTCGACATGCGAAACTGTGGGCACGTTAGCGATATGGCGAAGTGGTGTTGTTTCGCCGCCACTTCGTGCCGAGTGGCCCGCGTGCCATAAGCACGATGAAAAAGGCTTTTGAATTTGAACCTGTGCACATGGCTACTGCTGTGCTCTCGCGAGGGGCACGGTGGTGGAAGCTCAGAGCAATGCTTGCTTGCTCTGGACTAGTTGATTGTTGTGCGCGCAAAAAAGACTGTCTTAATCTCGCACGCGTGACTGTATTGTGCGCAACGAAACTGAAGCCACGCGATCTTTAAACGATCATCCAAAGAAACAGGAACGGTTAGGCTTTGTTCTAATGCCCATCATCATCATCGTCACCGCTCAAAAGTAGTTGGTGTAGATTATACACAGATTGATAGCTTCCAGCGGAGTAAGTGTGTGTTATTGGT]
[+] EMBL BM652147 [CCGCGCTTCATGATGTACAGCAGCAATGAGATGGCTTACATCCGGTGTGTTCGGGCCGGTGACAAAACGACACGATCGAGACACCCGCGTAATGACTGAATAACTAACTCAAAACTGCGCTTGTTGTCCCTTTCCCCCGATGCTACTCTCGACATGCGAAACTGTGGGCACGTTAGCGATATGGCGAAGTGGTGTTGTTTCGCCGCCACTTCGTGCCGAGTGGCCCGCGTGCCATAAGCACGATGAAAAAGGCTTTTGAATTTGAACCTGTGCACATGGCTACTGCTGTGCTCTCGCGAGGGGCACGGTGGTGGAAGCTCAGAGCAATGCTTGCTTGCTCTGGACTAGTTGATTGTTGTGCGCGCAAAAAAGACTGTCTTAATCTCGCACGCGTGACTGTATTGTGCGCAACGAAACTGAAGCCACGCGATCTTTAAACGATCATCCAAAGAAACAGGAACGGTTAGGCTTTGTTCTAATGCCCATCATCATCATCGTCACCGCTCAAAAGTAGTTGGTGTAGATTATACACAGATTGATAGCTTCCAGCGGAGTAAGTGTGTGTTATTGGT]
consensusID : consensus_6228#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 509 fasta sequence
[CCCTGCTCTAGCAGAATCCCCTGNGGTAAACACAAAGCGCGCGCGAGCTAATGATTGAGGTATTATTAGAGCAGCAGACGTTGATCGTAGCAGATCAACTGCTAAGTGGGTATGCATGAAAGACGCATTTACCAAATGAGACGATGCGCCGTTCACTCGAAATGTGGGTAACACTGGAGAAAACCACACTGAGCCACAACAGCCGCGCGTAATTGTCCGGGACTGAGGGTGCCCACGAGAAAGAAACGCAAACAGAGGCAACAGAANGGCGTTACCGTTCCTTCAGCTCTTATCACTNCTAATTGGCGCGGCCACANAGNGGGTAGGCCCAAAATAACACTTGCANGATAACCCCACNAACCACGGAATTGCCCNACTGGCGCCAAACCCANGTTGGCCGGNTATTGAACAGGGCTTATAAACNGGNAACAANCCACCTGCGCGCCAATTGTTCCACCGCNAACGCTAACCGATCACAACCGAGACATGGCACACGANTACCGCGGGGA]
[+] EMBL AL696521 [CCCTGCTCTAGCAGAATCCCCTGNGGTAAACACAAAGCGCGCGCGAGCTAATGATTGAGGTATTATTAGAGCAGCAGACGTTGATCGTAGCAGATCAACTGCTAAGTGGGTATGCATGAAAGACGCATTTACCAAATGAGACGATGCGCCGTTCACTCGAAATGTGGGTAACACTGGAGAAAACCACACTGAGCCACAACAGCCGCGCGTAATTGTCCGGGACTGAGGGTGCCCACGAGAAAGAAACGCAAACAGAGGCAACAGAANGGCGTTACCGTTCCTTCAGCTCTTATCACTNCTAATTGGCGCGGCCACANAGNGGGTAGGCCCAAAATAACACTTGCANGATAACCCCACNAACCACGGAATTGCCCNACTGGCGCCAAACCCANGTTGGCCGGNTATTGAACAGGGCTTATAAACNGGNAACAANCCACCTGCGCGCCAATTGTTCCACCGCNAACGCTAACCGATCACAACCGAGACATGGCACACGANTACCGCGGGGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6228#1 CCGTACGAAATGATGAACAGTTGCCCAGCAGCAACGCAACAGCAGCAACGCAACCACTCG 60
consensus_6228#3 ------------------------------------------------------------
consensus_6228#0 -----------------------AGGCCAGAATCGGCACGNGGCCAAACGAGACGATGCG 37
consensus_6228#2 ------------------------------------------------------------
consensus_6228#1 ATCACGTGTTTCTTTTAGGGCAGTTTATTTGAAAAGTGCGTTTTTTGTTTGTTTGTTATC 120
consensus_6228#3 ------------------------------------------------------------
consensus_6228#0 CCGTCTCAATCGAAAAGGGATAACATTGGAGAAAGCTACACTGAGCCACAGCAGCCGCGC 97
consensus_6228#2 ---CCGCGCTTCATGATGTACAGCAGCAATGAGA-------TGGCTTACATCCG----GT 46
consensus_6228#1 CTTTCTTCACACATTGGAAGAATCGAAAGAGCGAAGATGATCGCGAGGGTCGCAAAAATA 180
consensus_6228#3 ------------------------------------------------------------
consensus_6228#0 GTAATTGTCCTGGACTGAGGGTGCCACGCGAAAGAAACGCTCTAACGAAAGAGGTAAAGA 157
consensus_6228#2 GTGTTCGGGCCGG--TGACAAAACGACACGATCGAGACACCC--GCGTAATGACTGAATA 102
consensus_6228#1 CCCTCCTCCTTCCGTGAGGATCATGTACACCGATCATGGCTAGCGACGAAGCAGGCAAGA 240
consensus_6228#3 ------------------------------------------------------------
consensus_6228#0 ACGCTTCCGTTCC-CTTCACCTCTTTTTGTTTTTTATAGCGCGCAGTAAGGTAGGCCAAA 216
consensus_6228#2 ACTAACTCAAAAC-TGCGCTTGTTGTCCCTTTCCCCCGATGCTACTCTCGACATGCGAAA 161
consensus_6228#1 GCACCGCATACGTAGTATATGCATCATTTCCACGAAATGAGAATGACTTGACGTAGCAAG 300
consensus_6228#3 ---------------------------------------------CCCTGCTCTAGCAGA 15
consensus_6228#0 TAAATGAAGATACCTCAAAACA--CGATGCCACGCGCAACCGGTGCGCGGTTTGAACCTG 274
consensus_6228#2 C---TGTGGGCACGTTAG------CGATATGGCGAAGTGGTGTTGTTTCGCCGCCACTT- 211
* *
consensus_6228#1 AACAAACACATCACACACAAACGCGCGCGCGAGCTAATGATTGAAGGTAGTATTAGAGCA 360
consensus_6228#3 ATCCCCTGNGGTAAACACAAA-GCGCGCGCGAGCTAATGATTGA-GGTATTATTAGAGCA 73
consensus_6228#0 -CTTACCGCAAACACCGCGCACAAGCGCGCACTACGAAAACGAAATGAAACTAAACGAAT 333
consensus_6228#2 -CGTGCCGAGTGGCCCGCGTGCCA-TAAGCACGATGAAAAAGGCTTTTGAATTTGAACCT 269
* * ** * *
consensus_6228#1 GCAGACGTTGATCGTAGCAGATCAACTGCTAAG-GGGTATGCA-----TGAAAGACGCAT 414
consensus_6228#3 GCAGACGTTGATCGTAGCAGATCAACTGCTAAGTGGGTATGCA-----TGAAAGACGCAT 128
consensus_6228#0 GAAAAAAA-AGCAGCGCAACTAAACGCGCGACA-AGATACGAACCCCCCCCTCCCGNCAC 391
consensus_6228#2 GTGCACAT-GGCTACTGCTGTGCTCTCGCGA-G-GGGCACGG------TGGTGGAAGCTC 320
* * ** * * * * *
consensus_6228#1 TTACCAAATGAGACGATGCGCCGTTCACTCGAAAGG--GGTA-ACACTGGAGAAAACCAC 471
consensus_6228#3 TTACCAAATGAGACGATGCGCCGTTCACTCGAAATGTGGGTA-ACACTGGAGAAAACCAC 187
consensus_6228#0 GAATCATCTTGTAAAGCAGGCAATGAGATGGATGTAAGATCGTGTGACAAAACGACACGA 451
consensus_6228#2 AGAGCAATGCTT---GCTTGCTCTGGACTAGTTG-ATTGTTGTGCGCGCAAAAAAGACTG 376
* ** ** * * * * * *
consensus_6228#1 ACTGAGCCACAACAGCCGCGCGTAATTGTCCG----GGTACTGAGGG-GTGCCACGAGAA 526
consensus_6228#3 ACTGAGCCACAACAGCCGCGCGTAATTGTCCG----GG-ACTGAGGG-TGCCCACGAGAA 241
consensus_6228#0 TCCGACACCCGCGTA-ATGACTGAATAACTAACTCAAAAGCTGCGCTTGTTGTCCCTGTC 510
consensus_6228#2 TCTTAATCTCGCACGCGTGACTGTATTGTGCGCAACGAAACTGAA---GCCACGCGATCT 433
* * * * * ** *** *
consensus_6228#1 AGAAACGCTC-------TAACGAAAGAGGCA-AAGAACGCTTCCGTTCCCTTCAC-CTCT 577
consensus_6228#3 AGAAACGCA---------AACAGAGGCAACAGAANGGCGTTACCGTTCCTTCAGCTCTTA 292
consensus_6228#0 CCAGATGCTACTCTCGACATGCGAAACTATGGGCACGCTAGCGATATGG-CGAAGAGGTG 569
consensus_6228#2 TTAAACGAT--------CATCCAAAGAAACAGGAACGGTTAGGCTTTGTTCTAATGCCCA 485
* * * * * *
consensus_6228#1 TTATTCTTATTGCGCGC-------AGAAGGGTAGGCCAAA-------------------- 610
consensus_6228#3 TCACTNCTAATTGGCGCGGCCACANAGNGGGTAGGCCCAAAATAACACTTGCANGATAAC 352
consensus_6228#0 TTGTT-TCGCCGC-CACTTCGTGTTGAGTGGCCCCCGTGCCATAAGCACGATGTAAAACG 627
consensus_6228#2 TCATCATCATCGT-CACCGC-TCAAAAGTAGTTGGTGTAGATTATACACAGATTGA--TA 541
* * * *
consensus_6228#1 ------------------------------------------------------------
consensus_6228#3 CCCACNAACCACGGAATTGCCCNACTGGCGCCAAACCCANGTTGGCCGGNTATTGAACAG 412
consensus_6228#0 GCTTTNTGAATTTGAACCGGTGCACATGGCTACTGCTGTGCGTCTCGCGAGGGGCACGG- 686
consensus_6228#2 GCTTCCAGCG---GAGTAAGTGTGTGTTATTGGT-------------------------- 572
consensus_6228#1 ------------------------------------------------------------
consensus_6228#3 GGCTTATAAACNGGNAACAANCCACCTGCGCGCCAATTGTTCCACCGCNAACGCTAACCG 472
consensus_6228#0 ------------------------------------------------------------
consensus_6228#2 ------------------------------------------------------------
consensus_6228#1 -------------------------------------
consensus_6228#3 ATCACAACCGAGACATGGCACACGANTACCGCGGGGA 509
consensus_6228#0 -------------------------------------
consensus_6228#2 -------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||