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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6251#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1094 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGGCCGCGGCCGGCAAAAGCCTCGGCACGATCGCGCTGATCGATGCCAACATTACCAAGGCGAAGGTGGACGACCTGCAGACGCTGCACACGATACTGTACGAGGGGCCGGCCAAGCCGATGGTGCTGCGGCGCAACCTGCGCAAGTTCGACGGGTTCGAGTTCGGCGCGGACTCGGACGCGTACCGGAAGCGCGTGTCGGCCACGGAAAAGCTGGACGTGAAGAAGCTGGGCCAGCTGGCGGAGATACTGGCGCTGGAGAAGAAGGGCAGCAAGGAGGAGCTAGCCGGGCGGATCTGCACCTTCTTGCTGCGGCCGGACGGCGACGAGGAGCTGCCCGACGACGAGATGGGCGAGGAGGAGGAAGAGGAGGAGGATGAGGAGAACGAGGAGGAGGAGATGAGCGAGGAGGAGGAGGAGGCACCAAAGAAGAAAACGCCGGCAAAGCGTGGCAGTGGTGCGTCGGCTGCAGCACCGGCCGGCCGTGGCAGGGATAACGCCAAGTCGTCCAGCGGCCGTCCGAAGCGATCGACGGCCGGTCGTGGTTACCAAGATTACTCCTCCTCGGAGGAGGAAGAGGAGGAAACCGTCAAGGTGGGCCGCGGCCGTCGTGCCCGTCGAGGATCGGACAGTGGATCGGATTATAATCCCTCGGCCGGGTCAGATTCCGATGCGGGCAAGCGAAGATCGTCCCGCGCACCGACGCGCGGCAGTCGAACCTCGGCACGGAACGTACGCAAGCGGTACAGCGACGACGAATCGGAAGAAAGTCAAAGCGACGACGATTTCAGCGAGGATGATCGACGAAAAAAGAAGACCACACCGGCACGTGGTCGCGGCCGTCCCAGTGCTGCTGCCGTCGCCGCCCGACAGTCGCAGCGGGGCCGGGGCCGCAAGCGAAAAGCAGAAACTGAAAGCGAAGAGGAAGAGTCGGAAGAGGAGGAGGAAGAGGTCGACAGTGAGGACAGTGATCGGCCGAAGCGGAAATCGGTTGCGAAGGCGGGTGGCCGCGCGGCAGCTGCCGTAGCCAACAATAAGAGCAAGAATGCGAGTGCGGCGGCAAAAGGGTG]
[+] EMBL BM616074 [CCGCCCACGCGTCCGCCCACGCGTCCGGCCGCGGCCGGCAAAAGCCTCGGCACGATCGCGCTGATCGATGCCAACATTACCAAGGCGAAGGTGGACGACCTGCAGACGCTGCACACGATACTGTACGAGGGGCCGGCCAAGCCGATGGTGCTGCGGCGCAACCTGCGCAAGTTCGACGGGTTCGAGTTCGGCGCGGACTCGGACGCGTACCGGAAGCGCGTGTCGGCCACGGAAAAGCTGGACGTGAAGAAGCTGGGCCAGCTGGCGGAGATACTGGCGCTGGAGAAGAAGGGCAGCAAGGAGGAGCTAGCCGGGCGGATCTGCACCTTCTTGCTGCGGCCGGACGGCGACGAGGAGCTGCCCGACGACGAGATGGGCGAGGAGGAGGAAGAGGAGGAGGATGAGGAGAACGAGGAGGAGGAGATGAGCGAGGAGGAGGAGGAGGCACCAAAGAAGAAAACGCCGGCAAAGCGTGGCAGTGGTGCGTCGGCTGCAGCACCGGCCGGCCGTGGCAGGGATAACGCCAAGTCGTCCAGCGGCCGTCCGAAGCGATCGACGGCCGGTCGTGGTTACCAAGATTACTCCTCCTCGGAGGAGGAAGAGGAGGAAACCGTCAAGGTGGGCCGCGGCCGTCGTGCCCGTCGAGGATCGGACAGT ]
[+] EMBL BM612297 [ ccgCGAGGAGGAGGAGATGAGCGAGGAGGAGGAGGAGGCACCAAAGAAGAAAACGCCGGCAAAGCGTGGCAGTGGTGCGTCGGCTGCAGCACCGGCCGGCCGTGGCAGGGATAACGCCAAGTCGTCCAGCGGCCGTCCGAAGCGATCGACGGCCGGTCGTGGTTACCAAGATTACTCCTCCTCAGAGGAGGAAGAAGAGGAAACCGTCAAGGTGGGCCGCGGCCGTCGTGCCCGTCGAGGATCGGACAGTGGATCGGATTATAATCCCTCGGCCGGGTCAGATTCCGATGCGGGCAAGCGAAGATCGTCCCGCGCACCGACGCGCGGCAGTCGAACCTCGGCACGGAACGTACGCAAGCGGTACAGCGACGACGAATCGGAAGAAAGTCAAAGCGACGACGATTTCAGCGAGGATGATCGACGAAAAAAGAAGACCACACCGGCACGTGGTCGCGGCCGTCCCAGTGCTGCTGCCGTCGCCGCCCGACAGTCGCAGCGGGGCCGGGGCCGCAAGCGAAAAGCAGAAACTGAAAGCGAAGAGGAAGAGTCGGAAGAGGAGGAGGAAGAGGTCGACAGTGAGGACAGTGATCGGCCGAAGCGGAAATCGGTTGCGAAGGCGGGTGGCCGCGCGGCAGCTGCCGTAGCCAACAATAAGAGCAAGAATGCGAGTGCGGCGGCAAAAGGGTG]
consensusID : consensus_6251#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1023 fasta sequence
[CCGGAGGAGGAGGCACCAAAGAAGAAAACGCCGGCAAAGCGTGGCAGTGGTGCGTCGGCTGCAGCACCGGCCGGCCGTGGCAGGGATAACGCCAAGTCGTCCAGCGGCCGTCCGAAGCGATCGACGGCCGGTCGTGGTTACCAAGGTGCGTGTTGGGAGAAGGAGGGGTGGTGGCAGTAAATTTACGTTTCTTCCTTGGAGAGGGAGTCTTTAATCCTTTTTTTAGGTTTAATTTTTTGCGTACTAAACTACTCCTATTAGTACTTTTCCATTATTTAACCCATTTATTTTGAACACGAATTAGTGCATGCGGTCAAGGTTTGCTTTCCGTTTTGTATCTCTCTTTTGGTGTAGCTCAAGTTTTTTGTTTACTTTTACTCTTCCGTTTTCTGCCTTGATAATCACTCTAGACAATTCCTTATACGTAGATTACTCCTCCTCGGAGGAGGAAGAGGAGGAAACCGTCAAGGTGGGCCGCGGCCGTCGTGCCCGTCGAGGATCGGACAGTGGATCGGATTATAATCCCTCGGCCGGGTCAGATTCCGATGCGGGCAAGCGAAGATCGTCCCGCGCACCGACGCGCGGCAGTCGAACCTCGGCACGGAACCTACGCAAGCGGTACAGCGACGACGAATCGGAGGAAAGTCAAAGCGACGACGATTTCAGCGAGGATGATCGACGAAAAAAGAAGACCACACCGGCACGTGGCCGCGGCCGTCCCAGTGCTGCTGCCGTCGCCGCCCGACAGTCGCAGCGGGGCCGGGGCCGCAAGCGAAAAGCAGAAACTGAAAGCGAAGAGGAAGAGTCGGAAGAGGAGGAGGAAGAGGTCGACAGTGAGGACAGTGATCGGCCGAAGCGGAAATCGGTTGCGAAGGCGGGTGGCCGCGCGGCAGCTGCCGTAGCCAACAATAAGAGCAAGAATGCGAGTGCGGCGGCAAAGGGTGGACGAGGACAGCCGAAACGGGCGGCAGCAGTAAGCAGCGCCAAGAAGTCGCGACGGGGCCGTGGACGCAGCTCGTCCGG]
[+] EMBL BM651391 [CCGGAGGAGGAGGCACCAAAGAAGAAAACGCCGGCAAAGCGTGGCAGTGGTGCGTCGGCTGCAGCACCGGCCGGCCGTGGCAGGGATAACGCCAAGTCGTCCAGCGGCCGTCCGAAGCGATCGACGGCCGGTCGTGGTTACCAAGGTGCGTGTTGGGAGAAGGAGGGGTGGTGGCAGTAAATTTACGTTTCTTCCTTGGAGAGGGAGTCTTTAATCCTTTTTTTAGGTTTAATTTTTTGCGTACTAAACTACTCCTATTAGTACTTTTCCATTATTTAACCCATTTATTTTGAACACGAATTAGTGCATGCGGTCAAGGTTTGCTTTCCGTTTTGTATCTCTCTTTTGGTGTAGCTCAAGTTTTTTGTTTACTTTTACTCTTCCGTTTTCTGCCTTGATAATCACTCTAGACAATTCCTTATACGTAGATTACTCCTCCTCGGAGGAGGAAGAGGAGGAAACCGTCAAGGTGGGCCGCGGCCGTCGTGCCCGTCGAGGATCGGACAGTGGATCGGATTATAATCCCTCGGCCGGGTCAGATTCCGATGCGGGCAAGCGAAGATCGTCCCGCGCACCGACGCGCGGCAGTCGAACCTCGGCACGGAACCTACGCAAGCGGTACAGCGACGACGAATCGGAGGAAAGTCAAAGCGACGACGATTTCAGCGAGGATGA ]
[+] EMBL BM631942 [ ccgCAATTCCTTATACGTAGATTACTCCTCCTCAGAGGAGGAAGAGGAGGAAACCGTCAAGGTGGGCCGCGGCCGTCGTGCCCGTCGAGGATCGGACAGTGGATCGGATTATAATCCCTCGGCCGGGTCAGATTCCGATGCGGGCAAGCGAAGATCGTCCCGCGCACCGACGCGCGGCAGTCGAACCTCGGCACGGAACGTACGCAAGCGGTACAGCGACGACGAATCGGAGGAAAGTCAAAGCGACGACGATTTCAGCGAGGATGATCGACGAAAAAAGAAGACCACACCGGCACGTGGCCGCGGCCGTCCCAGTGCTGCTGCCGTCGCCGCCCGACAGTCGCAGCGGGGCCGGGGCCGCAAGCGAAAAGCAGAAACTGAAAGCGAAGAGGAAGAGTCGGAAGAGGAGGAGGAAGAGGTCGACAGTGAGGACAGTGATCGGCCGAAGCGGAAATCGGTTGCGAAGGCGGGTGGCCGCGCGGCAGCTGCCGTAGCCAACAATAAGAGCAAGAATGCGAGTGCGGCGGCAAAGGGTGGACGAGGACAGCCGAAACGGGCGGCAGCAGTAAGCAGCGCCAAGAAGTCGCGACGGGGCCGTGGACGCAGCTCGTCCGG]
consensusID : consensus_6251#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 672 fasta sequence
[CCGCTAAAACATGTCGGCAAACGCCGCCGATGAGGAGAAGAAATTAACAAAAATGCCAGAAGAACGTGAGGACGACAAGGGCACCGTGAAGTCGCCGGCGGCACCTGTGGACGGTGGTGCCAACAAAGCCGATGGTACTGGATCCGCCGCCGTCGCAGCCGCTGATAAGAAACCGCCATCGACCGAGCCGGCCGGTGGTGATACAAAAGCGCCACCCAAGAAAGCGGACGAGAAGAGTGGTGAGGAAAAATCGAAACCCGACGGTAAAACCCCGACCACCGACGACGGGGACGCTAGCAAAGCGGACGGTGGCGCACCCGGCCGGGACAATGGCAGCGCAGACAAACCGGCACCGCCGACAAAGGCCGCGCCGGAACCGGCGGACGCCAAGGGCAAGAATGGTCGCAATGGCGCCAAAAAGTCGCCGTCCGATGGCGGTACCGAGGACGGGGCGGACGGTGGGAAGGAACAGGCCGCGGCCGGCAAAAGCCTCGGCACGATCGCGCTGATCGATGCCAACATTACCAAGGCGAAGGTGGACGACCTGCAGACGCTGCACACGATACTGTACGAGGGGCCGGCCAAGCCGATGGTGCTGCGGCGCAACCTGCGCAAGTTCGACGGGTTCGAGTTCGGCGCGGACTCGGACGCGTACCGGAAGCGCGTGTCGGC]
[+] EMBL BM608336 [CCGCTAAAACATGTCGGCAAACGCCGCCGATGAGGAGAAGAAATTAACAAAAATGCCAGAAGAACGTGAGGACGACAAGGGCACCGTGAAGTCGCCGGCGGCACCTGTGGACGGTGGTGCCAACAAAGCCGATGGTACTGGATCCGCCGCCGTCGCAGCCGCTGATAAGAAACCGCCATCGACCGAGCCGGCCGGTGGTGATACAAAAGCGCCACCCAAGAAAGCGGACGAGAAGAGTGGTGAGGAAAAATCGAAACCCGACGGTAAAACCCCGACCACCGACGACGGGGACGCTAGCAAAGCGGACGGTGGCGCACCCGGCCGGGACAATGGCAGCGCAGACAAACCGGCACCGCCGACAAAGGCCGCGCCGGAACCGGCGGACGCCAAGGGCAAGAATGGTCGCAATGGCGCCAAAAAGTCGCCGTCCGATGGCGGTACCGAGGACGGGGCGGACGGTGGGAAGGAACAGGCCGCGGCCGGCAAAAGCCTCGGCACGATCGCGCTGATCGATGCCAACATTACCAAGGCGAAGGTGGACGACCTGCAGACGCTGCACACGATACTGTACGAGGGGCCGGCCAAGCCGATGGTGCTGCGGCGCAACCTGCGCAAGTTCGACGGGTTCGAGTTCGGCGCGGACTCGGACGCGTACCGGAAGCGCGTGTCGGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6251#0 CCGCCCACGCGTCCGCCCACGCGTCCGGCCGCGGCCGGCAAAAGCCTCGGCACGATCGCG 60
consensus_6251#1 ------------------------------------------------------------
consensus_6251#2 ------------------------------------------------------------
consensus_6251#0 CTGATCGATGCCAACATTACCAAGGCGAAGGTGGACGACCTGCAGACGCTGCACACGATA 120
consensus_6251#1 ------------------------------------------------------------
consensus_6251#2 ------------------------------------------------------------
consensus_6251#0 CTGTACGAGGGGCCGGCCAAGCCGATGGTGCTGCGGCGCAACCTG-CGCAAGTTCGACGG 179
consensus_6251#1 CCGGAGGAGGAGGCACCAAAGAAGAAAACGC--CGGCAAAGCGTGGCAGTGGTGCGTCGG 58
consensus_6251#2 ------------------------------------------------------------
consensus_6251#0 GTTCGAGTTCGGCGCGGACTCGGACGCGTACCG--GAAGCGCGTGTCGGCCA-CGGAAAA 236
consensus_6251#1 CTGCAGCACCGGCCGGCCGTGGCAGGGATAACGCCAAGTCGTCCAGCGGCCGTCCGAAGC 118
consensus_6251#2 ------------------------------------------------------------
consensus_6251#0 GCTGGACGTGAAGAAGCTGGGCCAGCTGGCGGAGATACTGGCGCTGGAGAAGAAGGGCAG 296
consensus_6251#1 GATCGACG-------GCCGGTCGTGGTTACCAAGGTGC--GTGTTGG--GAGAAGGA--- 164
consensus_6251#2 ------------------------------------------------------------
consensus_6251#0 CAAGGAGGAGCTAGCCGGGCGGATCTGCACCTTCTTGCTGCGGCCGGACGGCGACGAGGA 356
consensus_6251#1 ----GGGGTGGTGGC--AGTAAATTTACGTTTCTTCCTTGGAGAGGGA--GTCTTTAATC 216
consensus_6251#2 ---------------------------------------------------CCGCTAAAA 9
*
consensus_6251#0 GCTGCCCGACGACGAGATGGGCGAGGAGGAGGAAG-AGGAGGAGGATGAGGAGAACG--A 413
consensus_6251#1 CTTTTTTTAGGTTTAATTTTTTGCGTACTAA-ACT-ACTCCTATTAGTACTTTTCCA--T 272
consensus_6251#2 CATGTCGGCAAACGCCGCCGATGAGGAGAAGAAATTAACAAAAATGCCAGAAGAACGTGA 69
* * * * * * * * * *
consensus_6251#0 GGAGGAGGAGATGAGCGAGGAGGAGGAGGAGGCACCAAAGAA-GAAAACGCCGGCAAAGC 472
consensus_6251#1 TATTTAACCCATTTATTTTGAACACGAATTAGTGCATGCGGT-CAAGGTTTGCTTTCCGT 331
consensus_6251#2 GGACGACAAGGGCACCGTGAAGTCGCCGGCGGCACCTGTGGACGGTGGTGCCAACAAAGC 129
* * * * * *
consensus_6251#0 GTGGCAGTGGTGCGTCGGCTGCAGCACCGGCCGGCCGTGGCAGG--GATAACG-CCAAGT 529
consensus_6251#1 TTTGTATCTCTCTTTTGG-TGTAGCTCAAGTTTTTTGT----------TTACT-TTTACT 379
consensus_6251#2 -CGATGGTACTGGATCCGCCGCCGTCGCAGCCGCTGATAAGAAACCGCCATCGACCGAGC 188
* * * * * * * * *
consensus_6251#0 CGTCCAGCGGCCGTCCGAAGCGATCGAC--GGCCGGTCGTGGTTACCAAGATTACTCCTC 587
consensus_6251#1 CTTCCGTTTTCTGCCTTGA-TAATCACTCTAGACAATTCCTTATACGTAGATTACTCCTC 438
consensus_6251#2 CGGCCGGTGGTGATACAAA---AGCGCCACCCAAGAAAGCGGACGAGAAGAGTGGT---- 241
* ** * * * *** * *
consensus_6251#0 CTCGGAGGAGGAAGAGGAGGAAACCGTCAAGGTGGGCCGCGGCCGTCGTGCCCGTCGAGG 647
consensus_6251#1 CTCGGAGGAGGAAGAGGAGGAAACCGTCAAGGTGGGCCGCGGCCGTCGTGCCCGTCGAGG 498
consensus_6251#2 -------GAGGAAAAATCGAAACCCGACGGTA-AAACCCCGACCACCGA---CGACGGGG 290
****** * * ** *** * ** ** ** ** ** ** **
consensus_6251#0 ATCGGACAGTGGATCGGATTATAATCC-CTCGGCCGGGTCAGATTCCGATGCGGGCAAGC 706
consensus_6251#1 ATCGGACAGTGGATCGGATTATAATCC-CTCGGCCGGGTCAGATTCCGATGCGGGCAAGC 557
consensus_6251#2 AC--GCTAGCAAAGCGGACGGTGGCGCACCCGGCCGGGACA-ATGGCAGCGCAGACAAAC 347
* * ** * **** * * * ******** ** ** * ** * *** *
consensus_6251#0 GAAGATCGTCCCGCGCACCGACGCGCGGCAGTCGAACCTCGGCACGGAACGTACGCAAGC 766
consensus_6251#1 GAAGATCGTCCCGCGCACCGACGCGCGGCAGTCGAACCTCGGCACGGAACCTACGCAAGC 617
consensus_6251#2 CGGCACCG--CCGACAAAGGCCGCGCCGGAACCGGCGGACGCCA-AGGGCAAGAATGGTC 404
* ** *** * * ***** * * ** ** ** * * *
consensus_6251#0 GGTACAGCGACGACGAATCGGAAGAAAGTCAAAGCGACGACGATTTCAGCGAGGATGATC 826
consensus_6251#1 GGTACAGCGACGACGAATCGGAGGAAAGTCAAAGCGACGACGATTTCAGCGAGGATGATC 677
consensus_6251#2 GCAATGGCGCCAAAAAGTCGCCGTCCGAT---GGCGGTACCGAGGACGGGGCGGACGGTG 461
* * *** * * * *** * *** *** * * * *** * *
consensus_6251#0 GACGAAAAAAGAAGACCACACCGGCA----CGTGGTCGCGGCCGTCCCAGT-GCTGCTGC 881
consensus_6251#1 GACGAAAAAAGAAGACCACACCGGCA----CGTGGCCGCGGCCGTCCCAGT-GCTGCTGC 732
consensus_6251#2 G--GAAGGAACAGGCCGCGGCCGGCAAAAGCCTCGGCACGATCGCGCTGATCGATGCCAA 519
* *** ** * * * ****** * * * * ** ** * * * ***
consensus_6251#0 CGTCGCCGCC-CGACAGTCGCAGCGGGGCCGGGGCCGCAAGCGAAAA-GCAGAAACTGAA 939
consensus_6251#1 CGTCGCCGCC-CGACAGTCGCAGCGGGGCCGGGGCCGCAAGCGAAAA-GCAGAAACTGAA 790
consensus_6251#2 CATTACCAAGGCGAAGGTGGACGACCTGCAGACGCTGCACACGATACTGTACGAGGGGCC 579
* * ** *** ** * * ** * ** *** *** * * * * *
consensus_6251#0 AGCGAAGAGGAAGAGTCGGAAGAGGAGGAGGAAGAGGTCGACAGTGAGGACAGTGATCGG 999
consensus_6251#1 AGCGAAGAGGAAGAGTCGGAAGAGGAGGAGGAAGAGGTCGACAGTGAGGACAGTGATCGG 850
consensus_6251#2 GGCCAAGCCGATGGTGCTGCGGCGCAACCTGCGCAAGTT--CGACG-GGTTCGAGTTCGG 636
** *** ** * * * * * * * * ** * * ** * * ****
consensus_6251#0 CCGAAGCGGAAATCGGTTGCGAAGGCGGGTGGCCGCGCGGCAGCTGCCGTAGCCAACAAT 1059
consensus_6251#1 CCGAAGCGGAAATCGGTTGCGAAGGCGGGTGGCCGCGCGGCAGCTGCCGTAGCCAACAAT 910
consensus_6251#2 CGCGGACTCGGACGCGTACCGGAAGCGCGTGTCGGC------------------------ 672
* * * ** ** * *** *** * **
consensus_6251#0 AAGAGCAAGAATGCGAGTGCGGCGGCAAAAGGGTG------------------------- 1094
consensus_6251#1 AAGAGCAAGAATGCGAGTGCGGCGGCAAAGGGTGGACGAGGACAGCCGAAACGGGCGGCA 970
consensus_6251#2 ------------------------------------------------------------
consensus_6251#0 -----------------------------------------------------
consensus_6251#1 GCAGTAAGCAGCGCCAAGAAGTCGCGACGGGGCCGTGGACGCAGCTCGTCCGG 1023
consensus_6251#2 -----------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||