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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6252#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1059 fasta sequence
[CCGGCGAGTTTGAGAACATTTTGGTCGAGCTGATCGACAATCAGCGGTGGTCAGCGGCGATAAATCACGTAAAACAGCACAAACAAATGTCGAATCATTCTGCATCGAATTACAACCTTTCTGGGGGTGCCAGCGGTAGTAGTGGCGGTGGCAGTGGTGTTGGTGGCATGATGTTCGCCTCGGGTGGCGGTAACTGCAGCATTACTGGTGGCGGCGGCGTTGGCGATGGTCTGTTCGCCAATCTTGGCACGGAATTTAAACCCGTCGATGATTTATCGATCATATTGAACGTTTACGCTCACCGGCTGACGAAGGATAGAAATGATGTGTTCATTGTTTCGCGTTCGGAGCTCGAGCTGAGTGAAATCTATCAAATTCTCATGGAGAACCTGCTGCACGTGTCGTCAGCGCTATCCAACATGGAAATCAGCATGAAAGCTAACACAAGTTCCAGCTCCTCGACCGTTACAACGATGACGACAATTCCAGCAGTAATTGGTACGGGCCCCAGCACCGGTCCAGGAAACGGCGGAACCGGAAATGGCCATTCAGGAGCACCGGGCAACGCAGCGGGCTCGTTAGCCGGTTCCACTGCACAGGGCAGCAGCAATCTACCACCACCGCCGCCACCTGTATTGGCACCGACCAATCCGTTCAAAGACACCGTTGACATCATTACGACACTGTAGGCAAACTAACGGGGCAAACGACGCTAGGGAGCTGGTATTACAATGCATGTGGATGGTCGCTTGTTGCTGTTGAAATGTAGGCTCTCGGTTTGGGTCGATCCGCCTGGAACACACCGGACCGAGGCCGGGCTTACACGACGATGAAGGCTTTTGCATGCAAATTTGATTCCATTTTGGCGTGACACTCAGGAACCGAACCGGTTTGATTATCCACCATAATCCGTGTCCTCTTTCCGTCCTGCTGTGTCGTTATCTTCCGTCATTTTCCGTCATTTTCCGTTGTTTTTTTTGTCTGAAGCCATCTTTCAAGACACTGGTACAACAGCAAAGAAAACCAATTGATTTAGCCCGCTTTGTCTGCTGGTGCGAT]
[+] EMBL BM622919 [CCGGCGAGTTTGAGAACATTTTGGTCGAGCTGATCGACAATCAGCGGTGGTCAGCGGCGATAAATCACGTAAAACAGCACAAACAAATGTCGAATCATTCTGCATCGAATTACAACCTTTCTGGGGGTGCCAGCGGTAGTAGTGGCGGTGGCAGTGGTGTTGGTGGCATGATGTTCGCCTCGGGTGGCGGTAACTGCAGCATTACTGGTGGCGGCGGCGTTGGCGATGGTCTGTTCGCCAATCTTGGCACGGAATTTAAACCCGTCGATGATTTATCGATCATATTGAACGTTTACGCTCACCGGCTGACGAAGGATAGAAATGATGTGTTCATTGTTTCGCGTTCGGAGCTCGAGCTGAGTGAAATCTATCAAATTCTCATGGAGAACCTGCTGCACGTGTCGTCAGCGCTATCCAACATGGAAATCAGCATGAAAGCTAACACAAGTTCCAGCTCCTCGACCGTTACAACGATGACGACAATTCCAGCAGTAATTGGTACGGGCCCCAGCACCGGTCCAGGAAACGGCGGAACCGGAAATGGCCATTCAGGAGCACCGGGCAACGCAGCGGGCTCGTTAGCCGGTTCCACTGCACAGGGCAGCAGCAATCTACCACCACCGCCGCCACCTGTATTGGCACCGACCA ]
[+] EMBL BM608469 [ ccgCAAACAAATGTCGAATCATTCTGCATCGAATTACAACCTTTCTGGGGGCGCCAGCGGTAGTAGTGGCGGTGGTAGTGGTGTTGGTGGCATGATGTTCGCCTCGGGTGGCGGTAACTGCAGCATTACTGGTGGCGGCGGCGTTGGCGATGGTCTGTTCGCCAATCTTGGCACGGAATTTAAACCCGTCGATGATTTATCGATCATATTGAACGTTTACGCTCACCGGCTGACGAAGGATAGAAATGATGTGTTCATTGTTTCACGTTCGGAGCTCGAGCTGAGTGAAATCTATCAAATTCTCATGGAGAACCTGCTGCACGTGTCGTCAGCGCTATCCAACATGGAAATCAGCATGAAAGCTAACACAAGTTCCAGCTCCTCGACCGTTACAACGATGACGACAATTCCAGCAGTAATTGGTACGGGCCCCAGCACCGGTCCAGGGAACGGCGGAACCGGAAATGGCCATTCAGGAGCACCGGGCAACGCAGCGGGCTCGTTATCCGGTTCCACTGCACAGGGCAGCAGCAATCTACCACCACCGCCGCCGCCTGTATTGGCACCGACCAATCCGTTCAAAGACACCGTTGACATCATTACGACACTGTAGGCAAACTAACGGGGCAAACGACGCTAGGG ]
[+] EMBL BM576202 [ ccgCCAACATGGAAATCAGCATGAAAGCTAACACAAGTTCCAGCTCCTCGACCGTTACAACGATGACGACAATTCCAGCAGTAATTGGTACGGGCCCCAGCACCGGTCCAGGAAACGGCGGAACCGGAAATGGCCATTCAGGAGCACCGGGCAACGCAGCGGGCTCGTTAGCCGGTTCCACTGCACAGGGCAGCAGCAATCTACCACCACCGCCGCCACCTGTATTGGCACCGACCAATCCGTTCAAAGACACCGTTGACATCATTACGACACTGTAGGCAAACTAACGGGGCAAACGACGCTAGGGAGCTGGTATTACAATGCATGTGGATGGTCGCTTGTTGCTGTTGAAATGTAGGCTCTCGGTTTGGGTCGATCCGCCTGGAACACACCGGACCGAGGCCGGGCTTACACGACGATGAAGGCTTTTGCATGCAAATTTGATTCCATTTTGGCGTGACACTCAGGAACCGAACCGGTTTGATTATCCACCATAATCCGTGTCCTCTTTCCGTCCTGCTGTGTCGTTATCTTCCGTCATTTTCCGTCATTTTCCGTTGTTTTTTTTGTCTGAAGCCATCTTTCAAGACACTGGTACAACAGCAAAGAAAACCAATTGATTTAGCCCGCTTTGTCTGCTGGTGCGAT]
[+] EMBL BX614223 [ CCGGTTCCACTGCACAGGGCAGCAGCAATCTACCACCACCGCCGCCACCTGTATTGGCACCGACCAATCCGTTCAAAGACACCGTTGACATCATTACGACACTGTAGGCAAACTAACGGGGCAAACGACGCTAGGGAGCTGGTATTACAATGCATGTGGATGGTCGCTTGTTGCTGTTGAAATGTAGGCTCTCGGTTTGGGTCGATCCGCCTGGAACACACCGGACCGAGGCCGGGCTTACACGACGATGAAGGCTTTTGCATGCAAATTTGATTCCATTTTGGCGTGACACTCAGGAACCGAACCGGTTTGATTATCCACCATAATCCGTGTCCTCTTTCCGTCCTGCTGTGTCGTTATCTTCCGTCATTTTCCGTCATTTTCCGTTGTTTTTTTTGTCTGAAGCCATCTTTCAAGACACTGGTACAACAGCAAAGAAAACCAATTGA ]
consensusID : consensus_6252#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 786 fasta sequence
[TGCCTGTTGATGGTCNGCTTGTNTGCTGTTCGAANTGTACGCGCTATCGGTTCTGGGTTGATCCGCCTGGAACACAACGGAACGGGGCCGGGCTTNNCACGACGATGAAGGCTATATTGCATGCAAATTTGATNNCCATTTTGGCGTGACACTCAGGAACCTGAACCGGTTTGATTATCCACCATAATCCGTGTACCTCTTTCCGTCCTGCTGTGTCGTATACTTCCGTCATTATTACCGTCATTTTCCGTTGTTTTTTTGTCTGAAGCCATCTTTCAAGGCACTGGTACAACAGCAAAGAAAACCAATTGATTTAGCCCGCTTTGTCTGCTGGTGCGATTTNATACGACGACATTCAACGCGAATTGCGAGACCCCAGCACCGATATCCATTCGCCCGTGTAATGTGATTTTAAGTGAGGATCAAACCCGAAGCTGGAAAAGTCAAATGTATTCGAAACGAACCGTTTCACTGGAAACGTGTCACACGGAACACCAAAAAAAACCGTTTGCGAGAAGCAGCGCAGGCAGGACGGGCATGTGTGATAATACATGTGACAGTGAAGACGGTGTGGTCCATNTTAAATTGCATAAAGTCCCGTGCTTGGCGAAGCGTTCCGAATTCCCNTTTAAATANATTTATCCCACTTCATCCATCCATCNATCATCAGCGGGAGATTGCTGGAGTGCGGTGCTGTTNAAGTATATTTATTGATTGNGACAATGGGGCTATCCTNTACGCAGCTGNNAACAAGGAAAATAATCTCATCAGAAATCTGTCGCTACC]
[+] EMBL AL932794 [TGCCTGTTGATGGTCNGCTTGTNTGCTGTTCGAANTGTACGCGCTATCGGTTCTGGGTTGATCCGCCTGGAACACAACGGAACGGGGCCGGGCTTNNCACGACGATGAAGGCTATATTGCATGCAAATTTGATNNCCATTTTGGCGTGACACTCAGGAACCTGAACCGGTTTGATTATCCACCATAATCCGTGTACCTCTTTCCGTCCTGCTGTGTCGTATACTTCCGTCATTATTACCGTCATTTTCCGTTGTTTTTTTGTCTGAAGCCATCTTTCAAGGCACTGGTACAACAGCAAAGAAAACCAATTGATTTAGCCCGCTTTGTCTGCTGGTGCGATTTNATACGACGACATTCAACGCGAATTGCGAGACCCCAGCACCGATATCCATTCGCCCGTGTAATGTGATTTTAAGTGAGGATCAAACCCGAAGCTGGAAAAGTCAAATGTATTCGAAACGAACCGTTTCACTGGAAACGTGTCACACGGAACACCAAAAAAAACCGTTTGCGAGAAGCAGCGCAGGCAGGACGGGCATGTGTGATAATACATGTGACAGTGAAGACGGTGTGGTCCATNTTAAATTGCATAAAGTCCCGTGCTTGGCGAAGCGTTCCGAATTCCCNTTTAAATANATTTATCCCACTTCATCCATCCATCNATCATCAGCGGGAGATTGCTGGAGTGCGGTGCTGTTNAAGTATATTTATTGATTGNGACAATGGGGCTATCCTNTACGCAGCTGNNAACAAGGAAAATAATCTCATCAGAAATCTGTCGCTACC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6252#0 CCGGCGAGTTTGAGAACATTTTGGTCGAGCTGATCGACAATCAGCGGTGGTCAGCGGCGA 60
consensus_6252#1 ------------------------------------------------------------
consensus_6252#0 TAAATCACGTAAAACAGCACAAACAAATGTCGAATCATTCTGCATCGAATTACAACCTTT 120
consensus_6252#1 ------------------------------------------------------------
consensus_6252#0 CTGGGGGTGCCAGCGGTAGTAGTGGCGGTGGCAGTGGTGTTGGTGGCATGATGTTCGCCT 180
consensus_6252#1 ------------------------------------------------------------
consensus_6252#0 CGGGTGGCGGTAACTGCAGCATTACTGGTGGCGGCGGCGTTGGCGATGGTCTGTTCGCCA 240
consensus_6252#1 ------------------------------------------------------------
consensus_6252#0 ATCTTGGCACGGAATTTAAACCCGTCGATGATTTATCGATCA--TATTGAACGTTTACGC 298
consensus_6252#1 ------------------TGCCTGTTGATGGTCNGCTTGTNTGCTGTTCGAANTGTACGC 42
** ** **** * * * ** * * *****
consensus_6252#0 TC-ACCGGCTGACGAAGGATAGAAATGATGTGTTCATTGTTTCGCGTTCGGAGCTCGAGC 357
consensus_6252#1 GCTATCGGTTCTGGGTTGATCCGCCTG--GAACACAACGGAACGGGGCCGGGCTTNNCAC 100
* * *** * * *** ** * ** * ** * *** * *
consensus_6252#0 TGAG-TGAAATCTATCAAATTCTCATGGAGAACCTGCTGCACGTGTCGTCAGCGCTATCC 416
consensus_6252#1 GACGATGAAGGCTAT----ATTGCATGCA-AATTTGATNNCCATTTTGGCGTGACACTCA 155
* **** **** * **** * ** ** * * * * * * * **
consensus_6252#0 AACATGGAAATCAGCATGAAAGCTAACACAAGTTCCAGCTCCTCGACCGTTACAACGATG 476
consensus_6252#1 GGAACCTGAACCGGTTTGATTATCCACCATAATCCGTGTACCTCTTTCCGTCCTGCTGTG 215
* ** * * *** ** * * * * **** * * * * **
consensus_6252#0 ACG-ACAATTCCAGCAGTAATTGGTACGGGCCCCAGCACCGGTCCAGGAAACGGCGGAAC 535
consensus_6252#1 TCGTATACTTCCGTCATTATTACCGTCATTTTCCGTTGTTTTTTTGTCTGAAGCCATCTT 275
** * * **** ** ** * * ** * * * *
consensus_6252#0 CGGAAATGGCCATTCAGGAGCACCGGGCAACGCAGCGGGCTCGTTAGCCGGTTCCACTGC 595
consensus_6252#1 TCAAGGCACTGGTACAACAGCA--AAGAAAACCAATTGAT---TTAGCCCGCTTTGTCTG 330
* * ** **** * ** ** * ****** * *
consensus_6252#0 ACAGGGCAGCAGCAATCTACCACCACCGCCGCCACCTGTATTGGCACCGACCAATCCGTT 655
consensus_6252#1 CTGGTGCGATTTNATACGACGACATTCAACGCGAATTGCGA-GACCCCAGCACCGATATC 389
* ** * * ** ** * *** * ** * * ** * *
consensus_6252#0 CAAAGACACCGTTGACATCATTACGACACTGTAGGCAAACTAACGGGGCAAACGACGCTA 715
consensus_6252#1 CATTCGCCCGTGTAATGTGATTTTAAGTGAGGATCAAACCCGAAGCTGGAAAAGTCA--A 447
** * * * * * *** * * * ** * * * * *** * * *
consensus_6252#0 GGGAGCTGGTATTACAATGCATGTGGATGGTCGCTTGTTGCTGTTGAAATGTAGGCTCTC 775
consensus_6252#1 ATGTATTCGAA--ACGAACCGTTTCACTGGAAACGTGTCACACGGAACACCAAAAAAAAC 505
* * * * ** * * * * *** * *** * * * * *
consensus_6252#0 GGTTTGGGTCGATCCGCCTGGAACACACCGGACCGAGGCCGGGCTTACACGACGATGAAG 835
consensus_6252#1 CGTTTGCGAGAAGCAGCGCAGGCAGGACGGGCATGTGTGATAATACATGTGACAGTGAAG 565
***** * * * ** * ** ** * * * *** *****
consensus_6252#0 GCTTTTGCATGCAAATTTGATTCCATTTTGGCGTGACACTCAGGAACCGAACCGGTTTGA 895
consensus_6252#1 ACGGTGTGGTCCATNTTAAATTGCATAAAGTCCCGTGCTTGGCGAAGCGTTCCGAATTCC 625
* * * ** ** *** *** * * * * *** ** *** **
consensus_6252#0 TTATCCACCATAAT----CCGTGTCCTCTTTCCGTCCTGCTGTGTCGTTATCTTCCGTCA 951
consensus_6252#1 CNTTTAAATANATTTATCCCACTTCATCCATCCATCNATCATCAGCGGGAGATTGC-TGG 684
* * * * * ** ** ** *** ** * ** * ** * *
consensus_6252#0 TTTTCCGTCATTTTCCGTTGTTTTTTTTGTCTGAAGCCATCTTTCAAGACACTGGTACAA 1011
consensus_6252#1 AGTGCGGTGCTGTTNAAGTATATTTATTGATTGNGACAATGGGGCTATCCTNTA-CGCAG 743
* * ** * ** * * *** *** ** * ** * * * * **
consensus_6252#0 CAGCAAAGAAAACCAATTGATTTAGCCCGCTTTGTCTGCTGGTGCGAT 1059
consensus_6252#1 CTGNNAACAAGGA-AAATAATCTCATCAGAA--ATCTGTCGCTACC-- 786
* * ** ** ** * ** * * * **** * * *
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||