cluster # 6257

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Anopheles gambiae
cluster # 6257 cluster # 6257 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6257#0 length = 688 sequences # 4

consensus_6257#1 length = 462 sequences # 1

consensusID : consensus_6257#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 688
fasta sequence

                              [CCGCCCACGCGTCCGGTTGATCTTAAGACGAAAGGACGCCCAAAGGAAAACCCCCCTCTGTGTGTGTGTGTGTGTCAGTTTTATGGTGATTTTTGTTTGTTTGTTTGTTTTTGTCCTGATCCAGAAGGGAACCACTTCGATTGGTGGCAGCCTCGAGAGTTCCGTTACGACCTCGGGTTGTAGTTTGGTCTGAGCAGGCGGCGACACCCGTTGACGGAGGAGTGCAAAAGCGAAGTGAAAAGCGAAAGCCAAGTCTACACCCACCCCGCCCCAAAGATGGGACGGCACCCTCTGTCCCTAGTGATGGTGGTCCTAGCGATCATGCTGCTGCCGTACGGCTACACCTGGAAGGAGTACCGGATACGGCGCAGCATCGATCTGTCCGCCGCGAATCCACTGATCTCCGACACGAAGCTGCCGACCGATCTGGTCCCGTCCGGATACAGCCTCCATCTGCACCCGGTGCTGGACCGGTCGATCTTCTCCGGGCGCGTCAACATTACGCTGCTGTGCGCGAAGGCCACCAATCAGATCAACCTGCACGCCCACCACGACCTG-ACCGTGGACGAGCTCGAGCTGGAGGTGGTGCGGATCGGA-GAAGCCGAGGGCGGCACCAAGGTGCCGATAAGGCGCGTCGACCGCGTGCCGAAGAAGCCGCTGCTCGTGATCTACTTCCACGATGCGCTGA]

[+] EMBL BM624523             [CCGCCCACGCGTCCGGTTGATCTTAAGACGAAAGGACGCCCAAAGGAAAACCCCCCTCTGTGTGTGTGTGTGTGTCAGTTTTATGGTGATTTTTGTTTGTTTGTTTGTTTTTGTCCTGATCCAGAAGGGAACCACTTCGATTGGTGGCAGCCTCGAGAGTTCCGTTACGACCTCGGGTTGTAGTTTGGTCTGAGCAGGCGGCGACACCCGTTGACGGAGGAGTGCAAAAGCGAAGTGAAAAGCGAAAGCCAAGTCTACACCCACCCCGCCCCAAAGATGGGACGGCACCCTCTGTCCCTAGTGATGGTGGTCCTAGCGATCATGCTGCTGCCGTACGGCTACACCTGGAAGGAGTACCGGATACGGCGCAGCATCGATCTGTCCGCCGCGAATCCACTGATCTCCGACACGAAGCTGCCGACCGATCTGGTCCCGTCCGGATACAGCCTCCATCTGCACCCGGTGCTGGACCGGTCGATCTTCTCCGGGCGCGTCAACATTACGCTGCTGTGCGCGAAGGCCACCAATCAGATCAACCTGCACGCCCACCACGACCTG ACCGTGGACGAGCTCGAGCTGGAGGTGGTGCGGATCGGA GAAGCCGAGGGCGGCACCAAGGTGCCGATAAGGCGCGTCGACCGCGTGCCGAAGAAGCCGCTGCTCGTGATCTACTTCCACGATGCG    ]
[+] EMBL BM592059             [            CCGGTTGATCTTAAGACGAAAGGACGCCCAAAGGAAAACCCCCCTCTGTGTGTGTGTGTGTGTCAGTTTTATGGTGATTTTTGTTTGTTTGTTTGTTTTTGTCCTGATCCAGAAGGGAACCACTTCGATTGGTGGCAGCCTCGAGAGTTCCGTTACGACCTCGGGTTGTAGTTTGGTCTGAGCAGGCGGCGACACCCGTTGACGGAGGAGTGCAAAAGCGAAGTGAAAAGCGAAAGCCAAGTCTACACCCACCCCGCCCCAAAGATGGGACGGCACCCTCTGTCCCTAGTGATGGTGGTCCTAGCGATCATGCTGCTGCCGTACGGCTACACCTGGAAGGAGTACCGGATACGGCGCAGCATCGATCTGTCCGCCGCGAATCCACTGATCTCCGACACGAAGCTGCCGACCGATCTGGTCCCGTCCGGATACAGCCTCCATCT                                                                                                                                                                                                                                           ]
[+] EMBL BM624438             [               ccgGATCTTAAGACGAAAGGACGCCCAAAGGAAAACCCCCCTCTGTGTGTGTGTGTGTGTCAGTTTTATGGTGATTTTTGTTTGTTTGTTTGTTTTTGTCCTGATCCAGAAGGGAACCACTTCGATTGGTGGCAGCCTCGAGAGTTCCGTTACGACCTCGGGTTGTAGTTTGGTCTGAGCAGGCGGCGACACCCGTTGACGGAGGAGTGCAAAAGCGAAGTGAAAAGCGAAAGCCAAGTCTACACCCACCCCGCCCCAAAGATGGGACGGCACCCTCTGTCCCTAGTGATGGTGGTCCTAGCGATCATGCTGCTGCCGTACGGCTACACCTGGAAGGAGTACCGGATACGGCGCAGCATCGATCTGTCCGCCGCGAATCCACTGATCTCCGACACGAAGCTGCCGACCGATCTGGTCCCGTCCGGATACAGCCTCCATCTGCACCCGGTGCTGGACCGGTCGATCTTCTCCGGGCGCGTCAACATTACGCTGCTGTGCGCGAAGGCCACCAATCAGATCAACCTGCACGCCCACCACGACCTG ACCGTGGACGAGCTCGAGCTGGAGGTGGTGCGGATCGGA AAAGCCGAGGGCGGCACCAAGGTGCCGATAAGGCGCGTCGACCGCGTGCCGAAG AGCCGCTGCTCGTGATCTACTTCCACGATGCGCTGA]
[+] EMBL BM621879             [                  ccgCTTAAGACGAAAGGACGCCCAAAGGAAAACCCCCCTC  TGTGTGTGTGTGTGTCAGTTTTATGGTGATTTTTGTTTGTTTGTTTGTTTTTGTCCTGATCCAGAAGGGAACCACTTCGATTGGTGGCAGCCTCGAGAGTTCCGTTACGACCTCGGGTTGTAGTTTGGTCTGAGCAGGCGGCGACGCCCGTTGACGGAGGAGTGCAAAAGCGAAGTGAAAAGCGAAAGCCAAGTCTACACCCACCCCGCCCCAAAGATGGGACGGCACCCTCTGTCCCTGGTGATGGTGGTCCTAGCGATCATGCTGCTGCCGTACGGCTACACCTGGAAGGAGTACCGGATACGGCGCAGCATCGATCTGTCCGCCGCGAATCCACTGATCTCCGACACGAAGCTGCCGACCGATCTGGTCCCGTCCGGATACAGTCTCCATCTGCACCCGGTGCTGGACCGGTCGATCTTCTCCGGGCGCGTCAACATTACGCTGCTGTGCGCGAAGGCCACCAATCAGATCAACCTGCACGCCCACCACGACCTGCACCGTGGACGAGCTCGAGCTGGAGGTGGTGCGGATCGGAGGAAGCCGAGGGCGGCACCAAGGTGCCGATAAGGCGCGTCGACCGCGTGCCGAAGA                                    ]




>consensus_6257#0
CCGCCCACGCGTCCGGTTGATCTTAAGACGAAAGGACGCCCAAAGGAAAACCCCCCTCTG
TGTGTGTGTGTGTGTCAGTTTTATGGTGATTTTTGTTTGTTTGTTTGTTTTTGTCCTGAT
CCAGAAGGGAACCACTTCGATTGGTGGCAGCCTCGAGAGTTCCGTTACGACCTCGGGTTG
TAGTTTGGTCTGAGCAGGCGGCGACACCCGTTGACGGAGGAGTGCAAAAGCGAAGTGAAA
AGCGAAAGCCAAGTCTACACCCACCCCGCCCCAAAGATGGGACGGCACCCTCTGTCCCTA
GTGATGGTGGTCCTAGCGATCATGCTGCTGCCGTACGGCTACACCTGGAAGGAGTACCGG
ATACGGCGCAGCATCGATCTGTCCGCCGCGAATCCACTGATCTCCGACACGAAGCTGCCG
ACCGATCTGGTCCCGTCCGGATACAGCCTCCATCTGCACCCGGTGCTGGACCGGTCGATC
TTCTCCGGGCGCGTCAACATTACGCTGCTGTGCGCGAAGGCCACCAATCAGATCAACCTG
CACGCCCACCACGACCTGACCGTGGACGAGCTCGAGCTGGAGGTGGTGCGGATCGGAGAA
GCCGAGGGCGGCACCAAGGTGCCGATAAGGCGCGTCGACCGCGTGCCGAAGAAGCCGCTG
CTCGTGATCTACTTCCACGATGCGCTGA

consensusID : consensus_6257#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 462
fasta sequence

                              [CCGCCCACGCGTCCGGGGCGCGTCAACATTACGCTGCTGTGCGCGAAGGCCACCAATCAGATCAACCTGCACGCCCACCACGACCTGACCGTGGACGAGCTCGAGCTGGAGGTGGTGCGGATCGGAGGAGCCGAGGGCGGCACCAAGGTGCCGATAAGGCGCGTCGACCGCGTGCCGAAGAAGCCGCTGCTCGTGATCTACTTTCACGATGCGCTGACCGCCGGGGCGGCGTACGAGGTGCGGCTCCGCTTTGTCGGCAACATCTGGGAGAACGTGGAGGGCATCTTCGAGGGCAAGTACAAGCAGCAGCAATCGGCGGGTCCATCGGAGCCAGCGGGCACGGAATCGGAAGGTGTGACCGAGCCCGAGGAACATTCGTTCATCGGCACGTACTTCCGGCCGCACCATGCACGGCGCGTGTTTCCCTGCTTCGATGAACCGTCGTACAAGGTGCCGTTCAAT]

[+] EMBL BM637655             [CCGCCCACGCGTCCGGGGCGCGTCAACATTACGCTGCTGTGCGCGAAGGCCACCAATCAGATCAACCTGCACGCCCACCACGACCTGACCGTGGACGAGCTCGAGCTGGAGGTGGTGCGGATCGGAGGAGCCGAGGGCGGCACCAAGGTGCCGATAAGGCGCGTCGACCGCGTGCCGAAGAAGCCGCTGCTCGTGATCTACTTTCACGATGCGCTGACCGCCGGGGCGGCGTACGAGGTGCGGCTCCGCTTTGTCGGCAACATCTGGGAGAACGTGGAGGGCATCTTCGAGGGCAAGTACAAGCAGCAGCAATCGGCGGGTCCATCGGAGCCAGCGGGCACGGAATCGGAAGGTGTGACCGAGCCCGAGGAACATTCGTTCATCGGCACGTACTTCCGGCCGCACCATGCACGGCGCGTGTTTCCCTGCTTCGATGAACCGTCGTACAAGGTGCCGTTCAAT]




>consensus_6257#1
CCGCCCACGCGTCCGGGGCGCGTCAACATTACGCTGCTGTGCGCGAAGGCCACCAATCAG
ATCAACCTGCACGCCCACCACGACCTGACCGTGGACGAGCTCGAGCTGGAGGTGGTGCGG
ATCGGAGGAGCCGAGGGCGGCACCAAGGTGCCGATAAGGCGCGTCGACCGCGTGCCGAAG
AAGCCGCTGCTCGTGATCTACTTTCACGATGCGCTGACCGCCGGGGCGGCGTACGAGGTG
CGGCTCCGCTTTGTCGGCAACATCTGGGAGAACGTGGAGGGCATCTTCGAGGGCAAGTAC
AAGCAGCAGCAATCGGCGGGTCCATCGGAGCCAGCGGGCACGGAATCGGAAGGTGTGACC
GAGCCCGAGGAACATTCGTTCATCGGCACGTACTTCCGGCCGCACCATGCACGGCGCGTG
TTTCCCTGCTTCGATGAACCGTCGTACAAGGTGCCGTTCAAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6257#0      CCGCCCACGCGTCCGGTTGATCTTAAGACGAAAGGACGCCCAAAGGAAAACCCCCCTCTG 60
consensus_6257#1      ------------------------------------------------------------
                                                                                  

consensus_6257#0      TGTGTGTGTGTGTGTCAGTTTTATGGTGATTTTTGTTTGTTTGTTTGTTTTTGTCCTGAT 120
consensus_6257#1      -------------------CCGCCCACGCGTCCGGGGCGCGTCAACATTACGCTGCTGTG 41
                                                 *  *   *   *  *     **    * ***  

consensus_6257#0      CCAGAAGGGAACCACTTCGATTGGTGGCAGCCTCGAGAGTTCCGTTACGACCTCGGGTTG 180
consensus_6257#1      CGCGAAGGCCACCAATCAGAT------CAACCT--GCACGCCCACCACGACCT--GACCG 91
                      *  *****  **** *  ***      ** ***    *   **   *******  *   *

consensus_6257#0      TAGTTTGGTCTGAGCAGGCGGCGACACCCGTTGACGGAGGAGTGCAAAAGCGAAGTGAAA 240
consensus_6257#1      TGGACGAGCTCGAGCTGGAGGTGGTGCGGAT---CGGAGGAGC-CGAGGGCGGCACCAAG 147
                      * *    *   **** ** ** *   *   *   ********  * *  ***     ** 

consensus_6257#0      AGCGAAAGCCAAGTCTACACCCACCCCGCCCCAAAGATGGGACGGCACCCTCTGTCCCTA 300
consensus_6257#1      -GTGCCGATAAGG--CGCGTCGACCGCGTGCCGAAGA--AGCCGCTGCTCGTGATCTACT 202
                       * *      * *    *  * *** **  ** ****   * **   * *    **    

consensus_6257#0      GTGATGGTGGTCCTAGCGATCATGCTGC---TGCCGTACGGCTACACCTGGAAGG-AGTA 356
consensus_6257#1      TTCACGATGCGCTGACCGCCGGGGCGGCGTACGAGGTGCGGCTCCGCTTTGTCGGCAACA 262
                       * * * **  *  * **     ** **    *  ** ***** * * * *  ** *  *

consensus_6257#0      CCGGATACGGCGCAGCATCGATCTGTCCGCCGCGAATCCACTGATCTCCGACACGAAGCT 416
consensus_6257#1      TCTGGGAGAACGTGGAGGGCATCT-TCGAGGGCAAGTACAAG------CAGCAGCAATCG 315
                       * *  *   **  *     **** **    ** * * **        *  **  ** * 

consensus_6257#0      GCCGACCGATCTGGTCCCGTCCGGATACAGCCTCCATCTGCACCCGGTGCTG--GACCGG 474
consensus_6257#1      GCGGGTCCATCGGAGCCAGCGGGCACGGAATCGGAAGGTGTGACCGAGCCCGAGGAACAT 375
                      ** *  * *** *  ** *   * *   *  *   *  **   ***   * *  ** *  

consensus_6257#0      TCGATCTTCTCCGGGCGCGTC-AACATTACGCTGCTGTGCGCGAAGGCCACCAATCAGAT 533
consensus_6257#1      TCGTTCATCGGCACGTACTTCCGGCCGCACCATGCACGGCGCGTGTTTCCCTGCTTCGAT 435
                      *** ** **  *  *  * **   *   **  ***   *****     * *   *  ***

consensus_6257#0      CAACCTGCACGCCCACCACGACCTGACCGTGGACGAGCTCGAGCTGGAGGTGGTGCGGAT 593
consensus_6257#1      GAACCGTCGTACAAGGTGCCGTTCAAT--------------------------------- 462
                       ****  *   *      *      *                                  

consensus_6257#0      CGGAGAAGCCGAGGGCGGCACCAAGGTGCCGATAAGGCGCGTCGACCGCGTGCCGAAGAA 653
consensus_6257#1      ------------------------------------------------------------
                                                                                  

consensus_6257#0      GCCGCTGCTCGTGATCTACTTCCACGATGCGCTGA 688
consensus_6257#1      -----------------------------------