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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6260#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1197 fasta sequence
[CCGCCCACGCGTCCGGGACAGTAGAGTTTACAGCTTTTTTTTTTCTAAGGTTTACTGCAGCGGCAATCACTGTGAACTTTGTGTGTAGAACTTGACTTTGTTAGATTTGCAACCCCTCGTGAGGAGGAGCAGGAGGAGGAGGAGGAGTAGTATTTTTACAACCCAATACCTTCTTAGCTAGACATAGGTGGCTACCGTTAATGTTACTCCTACACTAATGTAATGCACTGAAGCAGCTGTACGATCCTCGCGCTTGAGGTCAACCAGAAAGCGTCCGTCGCTAATTAGTACATTGCAGTGAAAGGTTGAGTGGTTAGTTAGTTTCTTTCTTTCCTCGTTTTGTTAAGCCTTAAACTTTGCTACATTGTTGTGCAGTGTGACGAAGAAGCAGAGCTGTGTCCGATTGAGGACATGATAGGTGGGAGTGCAAATGTGCAAACGGGGAGAGGGTGTAGTACACTCCCCGCAGCTCATTTGCTTGCTGCTTTGTTGTTAAACATTTAGCTTTACACACAAGGGTTAGCCGATTAGCTTAGCCGTTAGTGCAGTTGCGAGTTGCGAACGTAACCGCGCCTGAGCGATTTGGTTTCCTTGGGTCCCAAATCGCCCGGTCCAAAGAACGGGACGATTCAATCAGATACCAAATAACTTATTTTATAATCAACAATAACACATAGCAAACATCTACAGAGAGCACAGGATTACGCTTAGTCCTTATGTGCGCAAAAATGCAACTCCAGGCTGACAATGCGGGTAGGTTTTCGTGCACTAATCGAATGCAGAGAAGCATCCAATGCCTAAATGATGATATTATCGATAATCGCACGCATCCCCAATTTATAAACGAGACCTGCGACGTTGCTAAGAACAGCATGGTGATCAACTCCTCCGAACATGAATCTAATCACTTCCCCCACCAGTGAGGATTGTTGGGCCCATGTGCCGCCACGCGCTAGAAAAATCTAGTGTCTAGACTGCATCCACTGCTACGCACCATTGGTAGTAACCGCCCGTTGGTAGGTGGTGGTTACTACCACGGCACGGCTCTGAACATAATCTAAAACAGCGCATAATGGGGAACACTTGGGAACACTTACAACAGATAGTTAACCGCGGGAGCAAAGATAAGTAGCAGTAGTAGTGATAGCAGTAGCAGAGTAGTGATAGTAATATTGTACTAAAAATAGACATCTACAT]
[+] EMBL BM620850 [CCGCCCACGCGTCCGGGACAGTAGAGTTTACAGCTTTTTTTTTTCTAAGGTTTACTGCAGCGGCAATCACTGTGAACTTTGTGTGTAGAACTTGACTTTGTTAGATTTGCAACCCCTCGTGAGGAGGAGCAGGAGGAGGAGGAGGAGTAGTATTTTTACAACCCAATACCTTCTTAGCTAGACATAGGTGGCTACCGTTAATGTTACTCCTACACTAATGTAATGCACTGAAGCAGCTGTACGATCCTCGCGCTTGAGGTCAACCAGAAAGCGTCCGTCGCTAATTAGTACATTGCAGTGAAAGGTTGAGTGGTTAGTTAGTTTCTTTCTTTCCTCGTTTTGTTAAGCCTTAAACTTTGCTACATTGTTGTGCAGTGTGACGAAGAAGCAGAGCTGTGTCCGATTGAGGACATGATAGGTGGGAGTGCAAATGTGCAAACGGGGAGAGGGTGTAGTACACTCCCCGCAGCTCATTTGCTTGCTGCTTTGTTGTTAAACATTTAGCTTTACACACAAGGGTTAGCCGATTAGCTTAGCCGTTAGTGCAGTTGCGAGTTGCGAACGTAACCGCGCCTGAGCGATTTGGTTTCCTTGGGTCCCAAATCGCCCGGTCCAAAGAACGGGACGATTCA ]
[+] EMBL BM655025 [ ccgCAAGGGTTAGCCGATTAGCTTAGCCGTTAGTGCAGTTGCGAGTTGCGAACGTAACCGCGCCTGAGCGATTTGGTTTCCTTGGGTCCCAAATCGCCCGGTCAAAAGAACGGGACGATTCAATCAGATACCAAATAACTTATTTTATAATCAACAATAACACATAGCAAACATCTACAGAGAGCACAGGATTACGCTTAGTCCTTATGTGCGCAAAAATGCAACTCCAGGCTGACAATGCGGGTAGGTTTTCGTGCACTAATCGAATGCAGAGAAGCATCCAATGCCTAAATGATGATATTATCGATAATCGCACGCATCCCCAATTTATAAACGAGACCTGCGACGTTGCTAAGAACAGCATGGTGATCAACTCCTCCGAACATGAATCTAATCACTTCCCCCACCAGTGAGGATTGTTGGGCCCATGTGCCGCCACGCGCTAGAAAAATCTAGTGTCTAGACTGCATCCACTGCTACGCACCATTGGTAGTAACCGCCCGTTGGTAGGTGGTGGTTACTACCACGGCACGGCTCTGAACATAATCTAAAACAGCGCATAATGGGGAACACTTGGGAACACTTACAACAGATAGTTAACCGCGGGAGCAAAGATAAGTAGCAGTAGTAGTGATAGCAGTAGCAGAGTAGTGATAGTAATATTGTACTAAAAATAGACATCTACAT]
consensusID : consensus_6260#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 827 fasta sequence
[CAGATTGCCCAGGTTTAAAAGCAGAGCTGTGTCGATTGAGGACATTATAGGTGGGAGTGCAAATGTGCAAACGGGGAGAGGGTGTAGTACACTACCCCGCAGCTCATTTGCTTGCCTGCTTATGTATGTTAAACATATTAGCTTNTACACACAAGGGTTAGCCGATTAGCTATAGCCGTATAAGTAGCAGTTGCGAGTTGCAGAACTGTAACCTGGCCTGAGCGATATATGGTATATACCTTGGGTACCCAAATACGANCGGGTCAAAAGAGAACNGTGGAACCGATANNCGAATCAAGAATAACCAAATANCTCCTAATCTCTCGTATCNAATACCCNANCNANATNANACACGATTAAGACACAAAACNAATACTTAACCACGNCAGACGCCACCAAGCGCATATACACAGGCCTAATCAGNTACACCTATACATAGTCGCNGCNAAACAAACAANTAGCNAAAGATACCCAAGAGCCATTGGACACCNAAATTGGACAGAGGTAAANAAGTAAAAAAACGGGATATGGCCACCCTAACAACTTACCGACANACATTCGNCCCACCACCTANAACTNNCCAATTTACTCCAACANTTAAGAAACTAAAAACAATATGGAAANTCATCAATTNACATACTCATNCAACACCCAACTNCCCACAAATCACCAGACCACAAAATCAACCAANTTAAACNCACCCCCCCCACNAAAACTCAANNCACCANATNNCACANANACCCACACACACCANAACNCCNTTNNACACNCTAAANTCNCNCTATANATACCCCTACNACNACACTCCACACCCACACACCNACNCT]
[+] EMBL AL695970 [CAGATTGCCCAGGTTTAAAAGCAGAGCTGTGTCGATTGAGGACATTATAGGTGGGAGTGCAAATGTGCAAACGGGGAGAGGGTGTAGTACACTACCCCGCAGCTCATTTGCTTGCCTGCTTATGTATGTTAAACATATTAGCTTNTACACACAAGGGTTAGCCGATTAGCTATAGCCGTATAAGTAGCAGTTGCGAGTTGCAGAACTGTAACCTGGCCTGAGCGATATATGGTATATACCTTGGGTACCCAAATACGANCGGGTCAAAAGAGAACNGTGGAACCGATANNCGAATCAAGAATAACCAAATANCTCCTAATCTCTCGTATCNAATACCCNANCNANATNANACACGATTAAGACACAAAACNAATACTTAACCACGNCAGACGCCACCAAGCGCATATACACAGGCCTAATCAGNTACACCTATACATAGTCGCNGCNAAACAAACAANTAGCNAAAGATACCCAAGAGCCATTGGACACCNAAATTGGACAGAGGTAAANAAGTAAAAAAACGGGATATGGCCACCCTAACAACTTACCGACANACATTCGNCCCACCACCTANAACTNNCCAATTTACTCCAACANTTAAGAAACTAAAAACAATATGGAAANTCATCAATTNACATACTCATNCAACACCCAACTNCCCACAAATCACCAGACCACAAAATCAACCAANTTAAACNCACCCCCCCCACNAAAACTCAANNCACCANATNNCACANANACCCACACACACCANAACNCCNTTNNACACNCTAAANTCNCNCTATANATACCCCTACNACNACACTCCACACCCACACACCNACNCT]
consensusID : consensus_6260#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 566 fasta sequence
[CCGAGGCTTAAATCTACAGAGAGCACAGGATTACGCTTAGTCCTTATGTGCGCAAAAATGCAACTCCAGGCTGACAATGCGGGTAGGTTTTCGTGCACTAATCGAATGCAGAGAAGCATCCAATGCCTAAATGATGATATTATCGATAATCGCACGCATCCCCAATTTATAAACGAGACCTGCGACGTTGCTAAGAACAGCATGGTGATCAACTCCTCCGAACATGAATCTAATCACTTCCCCCACAGTTGAGGATTGTTGGGCCCATGTGCCGCACGCGCTAGAAAAATCTAGTGTCTAGACTGGNATCCACTGCTACGCACCATTGGTAGTAACCGCCGTTGGTAGGTGGCTGGTTACTACCACGGCACGGCTCTGAACATAATCTAAAACAGCGCATAATCGGGGAACACTTGGGAACACTTACAACAGATAGTTAACCGCGGGAGCAAAGATAAGTAGCAGTAGTACGTGATAGCAGTAGCNGAGTAGTGATACGTAANTATNGTACTAANAAATAGACATCTACATGNTGAGGACGTCGATGTGACACGTGACTGGACATT]
[+] EMBL AL694244 [CCGAGGCTTAAATCTACAGAGAGCACAGGATTACGCTTAGTCCTTATGTGCGCAAAAATGCAACTCCAGGCTGACAATGCGGGTAGGTTTTCGTGCACTAATCGAATGCAGAGAAGCATCCAATGCCTAAATGATGATATTATCGATAATCGCACGCATCCCCAATTTATAAACGAGACCTGCGACGTTGCTAAGAACAGCATGGTGATCAACTCCTCCGAACATGAATCTAATCACTTCCCCCACAGTTGAGGATTGTTGGGCCCATGTGCCGCACGCGCTAGAAAAATCTAGTGTCTAGACTGGNATCCACTGCTACGCACCATTGGTAGTAACCGCCGTTGGTAGGTGGCTGGTTACTACCACGGCACGGCTCTGAACATAATCTAAAACAGCGCATAATCGGGGAACACTTGGGAACACTTACAACAGATAGTTAACCGCGGGAGCAAAGATAAGTAGCAGTAGTACGTGATAGCAGTAGCNGAGTAGTGATACGTAANTATNGTACTAANAAATAGACATCTACATGNTGAGGACGTCGATGTGACACGTGACTGGACATT]
[+] EMBL BX618054 [ AGAAGCATCCAACGCCTAAATGATGATATGATCGATAATCGCACGCATCCCCAATTTATAAACGAGACCCGCGACGTCGCTAAGAACAGCAGGGTGATCAACTCCCCCGAACATGAATCTAATCACTTCCCC ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6260#0 CCGCCCACGCGTCCGGGACAGTAGAGTTTACAGCTTTTTTTTTTCTAAGGTTTACTGCAG 60
consensus_6260#2 ------------------------------------------------------------
consensus_6260#1 ------------------------------------------------------------
consensus_6260#0 CGGCAATCACTGTGAACTTTGTGTGTAGAACTTGACTTTGTTAGATTTGCAACCCCTCGT 120
consensus_6260#2 ------------------------------------------------------------
consensus_6260#1 ------------------------------------------------------------
consensus_6260#0 GAGGAGGAGCAGGAGGAGGAGGAGGAGTAGTATTTTTACAACCCAATACCTTCTTAGCTA 180
consensus_6260#2 ------------------------------------------------------------
consensus_6260#1 ------------------------------------------------------------
consensus_6260#0 GACATAGGTGGCTACCGTTAATGTTACTCCTACACTAATGTAATGCACTGAAGCAGCTGT 240
consensus_6260#2 ------------------------------------------------------------
consensus_6260#1 ------------------------------------------------------------
consensus_6260#0 ACGATCCTCGCGCTTGAGGTCAACCAGAAAGCGTCCGTCGCTAATTAGTACATTGCAGTG 300
consensus_6260#2 ------------------------------------------------------------
consensus_6260#1 ------------------------------------------------------------
consensus_6260#0 AAAGGTTGAGTGGTTAGTTAGTTTCTTTCTTTCCTCGTTTTGTTAAGCCTTAAACTTTGC 360
consensus_6260#2 ------------------------------------------------------------
consensus_6260#1 ------------------------------------------------------------
consensus_6260#0 TACATTGTTGTGCAGTGTGACGAAGAAGCAGAGCTGTGTCCGATTGAGGACATGATAGGT 420
consensus_6260#2 ------------------------------------------------------------
consensus_6260#1 ------------------------------------------------------------
consensus_6260#0 GGGAGTGCAAATGTGCAAACGGGGAGAGGGTGTAGTACACTCCCCGCAGCTCATTTGCTT 480
consensus_6260#2 ------------------------------------------------------------
consensus_6260#1 --CAGATTGCCCAGGTTTAAAAGCAGAGCTGTGTCGATTGAGGACATTATAGGTGGGAGT 58
consensus_6260#0 GCTGCTTTGTTGTTAAACATTTAGCTTTACACACAAGGGT-TAGCCGATTAGCTTAGCCG 539
consensus_6260#2 ------------------------------------------------------------
consensus_6260#1 GCAAATGTGCAAACGGGGAGAGGGTGTAGTACACTACCCCGCAGCTCATTTGCTTGCCTG 118
consensus_6260#0 TTAGTGCAGTTGCGAGTTGCGAACGTAACCGCGCCTGAGCGATTTGGTTTCCTTGGGTCC 599
consensus_6260#2 ------------------------------------------------------------
consensus_6260#1 CTTATGTATGTTAAACATATTAGCTTNTACACACAAGGGTTAGCCGATTAGCTATAGCCG 178
consensus_6260#0 CAAATCGCCCGGTCCAAAGAACGGGACGATTCAATCAGATACCAAATAACTTATTTTATA 659
consensus_6260#2 ------------------------------------------------------------
consensus_6260#1 TATAAGTAGCAGTT--GCGAGTTGCAGAACTGTAACCTGGCCTGAGCGATATATGGTATA 236
consensus_6260#0 ATCAACAATAACACATA-GCAAACATCTACAGAGAGCACAGGATTACGCTTAGTCCTTAT 718
consensus_6260#2 ------------CCGAG-GCTTAAATCTACAGAGAGCACAGGATTACGCTTAGTCCTTAT 47
consensus_6260#1 TACCTTGGGTACCCAAATACGANCGGGTCAAAAGAGAACNGTGGAACCGATANNCGAATC 296
* * * * **** ** * ** ** *
consensus_6260#0 GTGCGCAAAAATGCAACTCC-AGGCTGACAATGCGGGTAGGTTTTCGTGCACTAATCGAA 777
consensus_6260#2 GTGCGCAAAAATGCAACTCC-AGGCTGACAATGCGGGTAGGTTTTCGTGCACTAATCGAA 106
consensus_6260#1 AAGAATAACCAAATANCTCCTAATCTCTCGTATCNAATACCCNANCNANATNANACACGA 356
* ** * * **** * ** * * ** * * *
consensus_6260#0 TGCAGAGAAGCATCCAATGCCTAAATGATGATATTATCGATAATCGCACGCATCCCCAAT 837
consensus_6260#2 TGCAGAGAAGCATCCAATGCCTAAATGATGATATTATCGATAATCGCACGCATCCCCAAT 166
consensus_6260#1 TTAAGACACAAAACNAATACTTAACCACGNCAGACGCCACCAAGCGCATATACACAGGCC 416
* *** * * * *** * *** * ** **** * *
consensus_6260#0 TTATAAACGAGACCTG--CGACGTTGCTA-AGAACAGCATGGTGATCAACTCCTCCGAAC 894
consensus_6260#2 TTATAAACGAGACCTG--CGACGTTGCTA-AGAACAGCATGGTGATCAACTCCTCCGAAC 223
consensus_6260#1 TAATCAGNTACACCTATACATAGTCGCNGCNAAACAAACAANTAGCNAAAGATACCCAAG 476
* ** * * **** * ** ** **** * ** ** **
consensus_6260#0 ATGAATCTAATCACTTCCCCC-ACCAGTGAGGATTGTTGGGCCCATGTGCCGCCACGCGC 953
consensus_6260#2 ATGAATCTAATCACTTCCCCC-ACAGTTGAGGATTGTTGGGCCCATGTGCCGC-ACGCGC 281
consensus_6260#1 AGCCATTGGACACCNAAATTGGACAGAGGTAAANAAGTAAAAAAACGGGATATGGC-CAC 535
* ** * * ** * * * * * * * * *
consensus_6260#0 TAGAAAAATCTAGTGTCTAGACTG-CATCCACTGCTACGCACCATTGGTAGTAACCGCCC 1012
consensus_6260#2 TAGAAAAATCTAGTGTCTAGACTGGNATCCACTGCTACGCACCATTGGTAGTAACCGCC- 340
consensus_6260#1 CCTAACAACTTACCGACANACATTCGNCCCACCACCTANAACTNNC--CAATTTACTCCA 593
** ** ** * * * **** * ** * * * **
consensus_6260#0 GTTGGTAGGTGG-TGGTTAC--TACCACGGCACGGCTCTGAACATAATC-TAAAACAGCG 1068
consensus_6260#2 GTTGGTAGGTGGCTGGTTAC--TACCACGGCACGGCTCTGAACATAATC-TAAAACAGCG 397
consensus_6260#1 ACANTTAAGAAACTAAAAACAATATGGAAANTCATCAATTNACATACTCATNCAACACCC 653
** * * ** ** * * * ***** ** * **** *
consensus_6260#0 CATAAT-GGGGAA-CACTTGGGAACACTTACAACAGAT---AGTTAACCGCGGGAGCAAA 1123
consensus_6260#2 CATAATCGGGGAA-CACTTGGGAACACTTACAACAGAT---AGTTAACCGCGGGAGCAAA 453
consensus_6260#1 AACTNCCCACAAATCACCAGACCACAAAATCAACCAANTTAAACNCACCCCCCCCACNAA 713
* ** *** * *** **** * * *** * * **
consensus_6260#0 GATAAGTAGCAGTAGTA-GTGATAGCAGTAGCAGAGTAGTGATA-GTAAT-AT-TGTACT 1179
consensus_6260#2 GATAAGTAGCAGTAGTACGTGATAGCAGTAGCNGAGTAGTGATACGTAANTAT-NGTACT 512
consensus_6260#1 AACTCAANNCACCAN-ATNNCACANANACCCACACACACCANAACNCCNTTNNACACNCT 772
* ** * * * * * * **
consensus_6260#0 AAAAA-TAGACATCTACAT------------------------------------ 1197
consensus_6260#2 AANAAATAGACATCTACATGNTGAGGACGTCGATGTG-ACACGTGACTGGACATT 566
consensus_6260#1 AAANTCNCNCTATANATACCCCTACNACNACACTCCACACCCACACACCNACNCT 827
** ** * *
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||