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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6263#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 711 fasta sequence
[CCGCCCACGCGTCCGTGCGAGGGTGTGTATTACTTTTCGCGCACGGTGAATTCACAATCCCCCCGGCCATTTCGTACCGTGTGTGTGCGTGTGTGTGTGTGCACGATTTCGTGCCTGGAGCGAAATTCTCGTTGCTGGAGCACCCTCGTCCGCCCGCCTGCCTCCCCCCACCAACTCCGTTCAACGCCCGTCAGCGCCGCACACACGCACGAACGGTTCCTGTGAGTGTGTCTGTTCCTGTCCTGTGGTACGAAAGCTTGCAGTGTGCAGTGCGTGCGTGCGTGTGTGTGTTTGTCTGTCCGACGTTCTGATTCCTGCCTAGCCTCCTAGCGAGGAGAGTGTGTGTGTGTGTGTGTGCGTGCGATCAAACAGTAGGCGAGGAGCGTGTGTGCAACACTACCAGATAGGG-AAAAAAGGAGAAGAAGAAACACACCCCAGCTCTACTCTTGCAGAAGGTGGGCGGCCCCCGGGGGAAGAGAGAGAGAGAGCGAATCAATAGCAACCGGTAGCTAGCTGCTGCTGTCAAACGCGAAGAAAAGCGGCCCTAAACGTGGTCATCCTTGATTTTTGCCTTTTATTTTCGATTGTGAGACAGTGTGTGAGTGTGTGTGTAGTGTCCTGTGTCCTGTGGCTTCTACCCTGGTAAACGGGGAAGCAGGGCCACAAATGTAACACTTCACTGCTTTGCAGCTTCTTNCTCCTGACGACGGG]
[+] EMBL BM628804 [CCGCCCACGCGTCCGTGCGAGGGTGTGTATTACTTTTCGCGCACGGTGAATTCACAATCCCCCCGGCCATTTCGTACCGTGTGTGTGCGTGTGTGTGTGTGCACGATTTCGTGCCTGGAGCGAAATTCTCGTTGCTGGAGCACCCTCGTCCGCCCGCCTGCCTCCCCCCACCAACTCCGTTCAACGCCCGTCAGCGCCGCACACACGCACGAACGGTTCCTGTGAGTGTGTCTGTTCCTGTCCTGTGGTACGAAAGCTTGCAGTGTGCAGTGCGTGCGTGCGTGTGTGTGTTTGTCTGTCCGACGTTCTGATTCCTGCCTAGCCTCCTAGCGAGGAGAGTGTGTGTGTGTGTGTGTGCGTGCGATCAAACAGTAGGCGAGGAGCGTGTGTGCAACACTACCAGATAGGG AAAAAAGGAGAAGAAGAAACACACCCCAGCTCTACTCTTGCAGAAGGTGGGCGGCCCCCGGGGGAAGAGAGAGAGAGAGCGAATCAATAGCAACCGGTAGCTAGCTGCTGCTGTCAAACGCGAAGAAAAGCGGCCCTAAACGTGGTCATCCTTGATTTTTGCCTTTTATTTTCGATTGTGAGACAGTGTGTGAGTGTGTGTGTAGTGTCCTGTGTCCTGTGGCTTCTACCCTGGTAAACGGGGAAGCAGGGCCACAAATG ]
[+] EMBL BX626951 [ TATTACTTTTCGCGCACGGTGAATTCACGATCCCCCCGGCCATTTCGTACCGTGTGTGTGC GTGTGTGTGTGCACGATTTCGTGCCTGGAGCGAAATTCTGGTTGCTGGAGCACCCTCGTCCGCCCGCCTGCCTCCCCCCACCAACTCCGTTCAACGCCCGTCAGCGCCGCACACACGCACGAACGGTTCCTGTGAGTGTGTCTGTTCCTGTCCTGTGGTACGAAAGCTTGCAGTGTGCAGTGCGTGCGTGCGTGTGTGTGTTTGTCTGTCCGACGTTCTGATTCCTGCCTAGCCTCCTAGCGAGGAGAGTGTGTGTGTGTGTGTGTGCGTGCGATCAAACAGTAGGCGAGGAGCGTGTGTGCAACACTACCAGATAGGGAAAAAAAGGAGAAGAAGAAACACACCCCACCTCTACTCTTGCAGAAGGTGGGCGGCCCCCGGGGGAAGAGAGAGAGAGAGCGAATCAATAGCAACCGGTAGCTAGCTGCTGCTGTCAAACGCGAAGAAAAGCGGCCCTAAACGTGGTCATCCTTGATTTTTGCCTTTTATTTTCGATTGTGAGACAGTGTGTGAGTGTGTGTGTAGTGTCCTGTGTCCTGTGGCTTCTACCCTGGTAAACGGGG AGCAGGGNCACAAATGTAACACTTCACTGCTTTGCAGCTTCTTNCTCCTGACGACGGG]
[+] EMBL BM642032 [ ccgGGTGAATTCACAATCCCCCCGGCCATTTCGTACCGTGTGTGTGCGTGTGTGTGTGTGCACGATTTCATGCCTGGAGCGAAATTCTCGTTGCTGGAGCACCCTCGTCCGCCCGCCTGCCTCCCCCCACCAACTCCGTTCAACGCCCGTCAGCGCCGCACACACGCACGAACGGTTCCTGTGAGTGTGTCTGTTCCTGTCCTGTGGTACGAAAGCTTGCAGTGTGCAGTGCGTGCGTGCGTGTGTGTGTT ]
consensusID : consensus_6263#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 654 fasta sequence
[CCGGCTTTTTTACTATTGTGTACCGATTTAGTGCGTGTGTGTGTGTGGGTGGAAAGTGTAATGTTGTAATTTAATAATAAGAAAGAAAAAAAAGATGACGTGCTGTTAACAGTGCAGTGTAAAAGTAAGCTTAAAGTGTGTGAAAAATTAGCAAAAGAAGAAGAAGAAGAAGAAGAAGAAACACGTCCGTTTCCGTGTGTGCTGTCCCTACGAGCCTCTGCCGCGATCGTCAGCCTGCAATCCGGTTGAGAGATATACCTCACAAACAACGCAACAGCAATTGGCCACCATTGTGTAGTAATTAACCAGGCAGGAATAATCCTCGAGTAACACAGTAACAGCAAAGCGCGGTCAACAACGCGTATCCTGAGACGAGTAAAAGAAGAGTATCAGGCGAGGAGACACCGGAGTCTGCGGCTGTCCGTAGTTGCTGCTCGAGTCCCAAACCTCTGGCAGTGTCCCGGAGGGTTACACCGATCTTCACGAACAAGACACACGAAACATGAGCGTGTAAAGCCGGAAAGTGCGATTGGTAGTATGCGGCACATCGGATAGATAGCAAAACGCTAAAGGTGTGTTAATAACTGAAACTTGCAGTAAGAAACGGATTGAAGAAATAGCCGAAACTTCAATCAGAAACGTTCTCAATCCACA]
[+] EMBL BM652615 [CCGGCTTTTTTACTATTGTGTACCGATTTAGTGCGTGTGTGTGTGTGGGTGGAAAGTGTAATGTTGTAATTTAATAATAAGAAAGAAAAAAAAGATGACGTGCTGTTAACAGTGCAGTGTAAAAGTAAGCTTAAAGTGTGTGAAAAATTAGCAAAAGAAGAAGAAGAAGAAGAAGAAGAAACACGTCCGTTTCCGTGTGTGCTGTCCCTACGAGCCTCTGCCGCGATCGTCAGCCTGCAATCCGGTTGAGAGATATACCTCACAAACAACGCAACAGCAATTGGCCACCATTGTGTAGTAATTAACCAGGCAGGAATAATCCTCGAGTAACACAGTAACAGCAAAGCGCGGTCAACAACGCGTATCCTGAGACGAGTAAAAGAAGAGTATCAGGCGAGGAGACACCGGAGTCTGCGGCTGTCCGTAGTTGCTGCTCGAGTCCCAAACCTCTGGCAGTGTCCCGGAGGGTTACACCGATCTTCACGAACAAGACACACGAAACATGAGCGTGTAAAGCCGGAAAGTGCGATTGGTAGTATGCGGCACATCGGATAGATAGCAAAACGCTAAAGGTGTGTTAATAACTGAAACTTGCAGTAAGAAACGGATTGAAGAAATAGCCGAAACTTCAATCAGAAACGTTCTCAATCCACA]
consensusID : consensus_6263#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 621 fasta sequence
[CCGCTACTGCGAGGCTTGCAGTGTGCAGTGCGTGCGTGCGTGTGTGTGTTTGTCTGTCCGACGTTCTGATTCCTGCCTAGCCTCCTAGCGAGGAGAGTGTGTGTGTGTGTGTGTGCGTGCGATCAAACAGTAGGCGAGGAGCGTGTGTGCAACACTACCAGATAGGGAAAAAAGGAGAAGAAGAAACACACCCCAGCTCTACTCTTGCAGAAGTGCGTGTGTGTGTGTGGGTGGAAAGTGTAATGTTGTAATTTAATAATAAGAAAGAAAAAAAAGATGACGTGCTGTTAACAGTGCAGTGTAAAAGTAAGCTTAAAGTGTGTGAAAAATTAGCAAAAGAAGAAGAAGAAGAAGAAGAAGAAACACGTCCGTTTCCGTGTGTGCTGTCCCTACGAGCCTCTGCCGCGATCGTCAGCCTGCAATCCGGTTGAGAGATATACCTCACAAACAACGCAACAGCAATTGGCCACCATTGTGTAGTAATTAACCAGGCAGGAATAATCCTCGAGTAACACAGTAACAGCAAAGCGCGGTCAACAACGCGTATCCTGAGACGAGTAAAAGAAGAGTATCAGGCGAGGAGACACCGGAGTCTGCGGCTGTCCGTAGTTGCTGCTCGAG]
[+] EMBL BM604566 [CCGCTACTGCGAGGCTTGCAGTGTGCAGTGCGTGCGTGCGTGTGTGTGTTTGTCTGTCCGACGTTCTGATTCCTGCCTAGCCTCCTAGCGAGGAGAGTGTGTGTGTGTGTGTGTGCGTGCGATCAAACAGTAGGCGAGGAGCGTGTGTGCAACACTACCAGATAGGGAAAAAAGGAGAAGAAGAAACACACCCCAGCTCTACTCTTGCAGAAGTGCGTGTGTGTGTGTGGGTGGAAAGTGTAATGTTGTAATTTAATAATAAGAAAGAAAAAAAAGATGACGTGCTGTTAACAGTGCAGTGTAAAAGTAAGCTTAAAGTGTGTGAAAAATTAGCAAAAGAAGAAGAAGAAGAAGAAGAAGAAACACGTCCGTTTCCGTGTGTGCTGTCCCTACGAGCCTCTGCCGCGATCGTCAGCCTGCAATCCGGTTGAGAGATATACCTCACAAACAACGCAACAGCAATTGGCCACCATTGTGTAGTAATTAACCAGGCAGGAATAATCCTCGAGTAACACAGTAACAGCAAAGCGCGGTCAACAACGCGTATCCTGAGACGAGTAAAAGAAGAGTATCAGGCGAGGAGACACCGGAGTCTGCGGCTGTCCGTAGTTGCTGCTCGAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6263#1 ------------------------------------------------------------
consensus_6263#2 CCGCTACTGCGAGGCTTGCAGTGTGCAGTGCGTGCGTGCGTGTGTGTGTTTGTCTGTCCG 60
consensus_6263#0 ------------------------------------------------------------
consensus_6263#1 ------------------------------------------------------------
consensus_6263#2 ACGTTCTGATTCCTGCCTAGCCTCCTAGCGAGGAGAGTGTGTGTGTGTGTGTGTGCGTGC 120
consensus_6263#0 ------------------------------------------------------------
consensus_6263#1 ------------------------------------------------------------
consensus_6263#2 GATCAAACAGTAGGCGAGGAGCGTGTGTGCAACACTACCAGATAGGGAAAAAAGGAGAAG 180
consensus_6263#0 ------------CCGCCCACGCGTCCGTGCGAGGGTGTGTATTACTTTTCGCGCACGGTG 48
consensus_6263#1 ------CCGGCTTTTTTACTATTGTGTACCGATTTAGTGCGTGTGTGTGTGTGGGTGGAA 54
consensus_6263#2 AAGAAACACACCCCAGCTCTACTCT-TGCAGA---AGTGCGTGTGTGTGTGTGGGTGGAA 236
consensus_6263#0 AATTCACAATCCCCCCGGCCATTTCGTACCGT----GTGTGTGCGTGTGTGTGTGTGCAC 104
* * * * * * * * *** *** ********* *** *
consensus_6263#1 AGTGTAATGT-TGTAATTTAATAATAAGAAAGAAAAAAAAGATGACGTGCTGTTAACAGT 113
consensus_6263#2 AGTGTAATGT-TGTAATTTAATAATAAGAAAGAAAAAAAAGATGACGTGCTGTTAACAGT 295
consensus_6263#0 GATTTCGTGCCTGGAGCGAAATTCTCGTTGCTGGAGCACCCTCGTCCGCCCGCCTGCCTC 164
* * ** ** * *** * * * * * * * *
consensus_6263#1 GCAGTGTAAAAGTAAGCTTAAAGTGTGTGAAAAATTAGCAAAAGAAGAAGAAGAAGAAGA 173
consensus_6263#2 GCAGTGTAAAAGTAAGCTTAAAGTGTGTGAAAAATTAGCAAAAGAAGAAGAAGAAGAAGA 355
consensus_6263#0 CCCCCACCAAC-TCCGTTCAACGCCCGTCAGC-----GCCGCACACACGCACGAACGGTT 218
* ** * * * ** * ** * ** * * * ***
consensus_6263#1 AGAAGAAACACGTCCGTTTCCGTGTGTGCTGTCCCTACGAGCCTCTGCCGCGATCGTCAG 233
consensus_6263#2 AGAAGAAACACGTCCGTTTCCGTGTGTGCTGTCCCTACGAGCCTCTGCCGCGATCGTCAG 415
consensus_6263#0 CCTGTGAGTGTGTCTGTTCC----TGTCCTGTGG-TACGAAAGCTTGCAGTGTGCAGT-G 272
* *** *** * *** **** ***** *** * * * *
consensus_6263#1 CCTGCAATCCGGTTGAGAGATATACCTCACAAACAACGCAACAGCAATTGGCCACCATTG 293
consensus_6263#2 CCTGCAATCCGGTTGAGAGATATACCTCACAAACAACGCAACAGCAATTGGCCACCATTG 475
consensus_6263#0 CGTGCG-TGCGTGTGTGTG-TTTGTCTGTCCGACGTTCTGATTCCTGCCTAGCCTCCTAG 330
* *** * ** ** * * * * ** * ** * * * * * *
consensus_6263#1 TGTAGTAATTAACCAGGCAGGAATAATCCTCGAGTAACACAGTAACAGCAAAGCGCG-GT 352
consensus_6263#2 TGTAGTAATTAACCAGGCAGGAATAATCCTCGAGTAACACAGTAACAGCAAAGCGCG-GT 534
consensus_6263#0 CGAGGAGAGTGTGTGTGTGTGTGTGTGCGTGCGATCAAACAGTAGGCGAGGAGCGTGTGT 390
* * * * * * * * * * * ****** * **** * **
consensus_6263#1 -CAACAACGC-GTATCCTGAGACGAGTAAAAGAAGAGTATCAGGCGAGGAG-ACAC---C 406
consensus_6263#2 -CAACAACGC-GTATCCTGAGACGAGTAAAAGAAGAGTATCAGGCGAGGAG-ACAC---C 588
consensus_6263#0 GCAACACTACCAGATAGGGAAAAAAGGAGAAGAAGAAACACACCCCAGCTCTACTCTTGC 450
***** * ** ** * ** * ******* ** * ** ** * *
consensus_6263#1 GGAGTCTGCGGCTGTCCGTAGTTGCTGCTCGAGTCCCAAACCTCTGGCAGTGTCCCGGAG 466
consensus_6263#2 GGAGTCTGCGGCTGTCCGTAGTTGCTGCTCGAG--------------------------- 621
consensus_6263#0 AGAAGGTG-GGCGGCCCCCGGGGGAAGAGAGAGAGAGAGCGAATCAATAGCAACC-GGTA 508
** ** *** * ** * * * ***
consensus_6263#1 GGTTACACCGATCTTCACGAACAAGACACACGAAACATGAGCGTGTAAAGCCGGAAAGTG 526
consensus_6263#2 ------------------------------------------------------------
consensus_6263#0 GCTAGCTGCTGCTGTCAAACGCGAAGAAAAGCGGCCCTAAACGTGGTCATCCTTGATTTT 568
consensus_6263#1 CGATTGGTAGTATGCGGCACATCGGATAGATAGCAAAACGCTAAAGGTGTGTTAATAACT 586
consensus_6263#2 ------------------------------------------------------------
consensus_6263#0 TGCCTTTTA-TTTTCGATTGTGAGACAGTGTGTGAGTGTGTGTGTAGTGTCCTGTGTCCT 627
consensus_6263#1 GAAACTTGCAGTAAGAAACGGATTGAAGAAATAGCCGAAACTTCAATCAGAAACGTTCTC 646
consensus_6263#2 ------------------------------------------------------------
consensus_6263#0 GTGGCTTCTACCCTGGTAAACGGGGAAGCAGGGCCACAAATGTAACACTTCACTGCTTTG 687
consensus_6263#1 AATCCACA---------------- 654
consensus_6263#2 ------------------------
consensus_6263#0 CAGCTTCTTNCTCCTGACGACGGG 711
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||