|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6271#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1122 fasta sequence
[CAGATTGCCCCAGGTTTAAGGCAGCTCCGTGGTACAGCTTGATCCAGACGCACACGGTACAGAGGTTCGTTACTATGTGCTTCCATATCCTGGCATACTACGATAAAGTAAACCGAGAGCGGGTCAGAAACACCAAAAGCCTGTGGTTAGTGTTTTTAATCGTTCGAAAATGTCACTTCTTCTCGAAGCAACCCTGCCGAAGAACCAGTTTAGTTTAGGGTTGCTTCCCGTCCAAGATCGTCGCCAGTTATCCATCCATATCCGTGCTGGTTTTGCAACATGATTCATACGAACGTGCCCTGCGTACGATGTTCGTGTCCATGACTGAGCATCATAACTTACCTCGCCGGAAGCATACGCAACTGAGGTAACTGCGTANACTATCTAAGGTCGCACCGGAATTGCATACANTAGCCTTAACATCCGAANCGAAACTCAAAGGGACGGGCGAGTNTACTCTAAANTTTCTCNATTTCATGGGTCTGTGCCAAGCCTTGTATTCTTCAATGGTACGAATTTCGGGCCAGAGCTGTGCCTAGGAGTTGTGCTAGTGGCCCCACAAATGGGTGGCAAGNAGGAAGNANACACAAGGNAAAACAAACCAAACGGCAAAAATTTCCAAACACACCGGTTATGGGTTACGGNGATTTGGGGTTACATNGGTAGGTAGGNGTTGGCCGGCCTTATACGGTTTACCGGCAACCTTTAAAAAATTCCCAAAGCCTGGTTATAGCGCGATGGGAACGTTCGACACACAATTCCGNCAACCAGCAAAGCAGCTGGTTGGAACCCGGGGACAACCAATTGGAACAGAATANCCTAGTTGACNTCACACCAAGTCCAAANTCCCCGATAAATATTCCCAGGTTAGGTCACATAAACACAACACAGANGGGAAAAAAACNATCCATGGGTATGATNCACTCAAAAACAAAGTGGTTACACTAGACAANTTTACCGACCCAAACGAGAGCGTTTNGGGNGTGGAACAAGCAGCGGTTTCTGGGGTTAAACAAAGGTTTCCCCCACTTTAGGGATGACACGACCCCCCAGGAGATTAGGATNTAAANNTNATAGNCACAGAGNTAAAATAAAGGAGCTTGTTAGNGAATTTTGCGNACN]
[+] EMBL AL697329 [CAGATTGCCCCAGGTTTAAGGCAGCTCCGTGGTACAGCTTGATCCAGACGCACACGGTACAGAGGTTCGTTACTATGTGCTTCCATATCCTGGCATACTACGATAAAGTAAACCGAGAGCGGGTCAGAAACACCAAAAGCCTGTGGTTAGTGTTTTTAATCGTTCGAAAATGTCACTTCTTCTCGAAGCAACCCTGCCGAAGAACCAGTTTAGTTTAGGGTTGCTTCCCGTCCAAGATCGTCGCCAGTTATCCATCCATATCCGTGCTGGTTTTGCAACATGATTCATACGAACGTGCCCTGCGTACGATGTTCGTGTCCATGACTGAGCATCATAACTTACCTCGCCGGAAGCATACGCAACTGAGGTAACTGCGTANACTATCTAAGGTCGCACCGGAATTGCATACANTAGCCTTAACATCCGAANCGAAACTCAAAGGGACGGGCGAGTNTACTCTAAANTTTCTCNATTTCATGGGTCTGTGCCAAGCCTTGTATTCTTCAATGGTACGAATTTCGGGCCAGAGCTGTGCCTAGGAGTTGTGCTAGTGGCCCCACAAATGGGTGGCAAGNAGGAAGNANACACAAGGNAAAACAAACCAAACGGCAAAAATTTCCAAACACACCGGTTATGGGTTACGGNGATTTGGGGTTACATNGGTAGGTAGGNGTTGGCCGGCCTTATACGGTTTACCGGCAACCTTTAAAAAATTCCCAAAGCCTGGTTATAGCGCGATGGGAACGTTCGACACACAATTCCGNCAACCAGCAAAGCAGCTGGTTGGAACCCGGGGACAACCAATTGGAACAGAATANCCTAGTTGACNTCACACCAAGTCCAAANTCCCCGATAAATATTCCCAGGTTAGGTCACATAAACACAACACAGANGGGAAAAAAACNATCCATGGGTATGATNCACTCAAAAACAAAGTGGTTACACTAGACAANTTTACCGACCCAAACGAGAGCGTTTNGGGNGTGGAACAAGCAGCGGTTTCTGGGGTTAAACAAAGGTTTCCCCCACTTTAGGGATGACACGACCCCCCAGGAGATTAGGATNTAAANNTNATAGNCACAGAGNTAAAATAAAGGAGCTTGTTAGNGAATTTTGCGNACN]
consensusID : consensus_6271#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 802 fasta sequence
[CGATAAAGTAAACCGAGAGCGGGTCAGAAACACCGAAAGCCGTGCGTGGTTAGTGTTTTTTTGAAAATGTCACTTCTTCTCCAAGCAACCCGTCGAAGAACCAGTTTAGTTTAGGGTTGCCTCCCGTCCAAGTTCGTCGCCAGTTATCCATCCATATCCGTGTGGTTTGCAACATGATTCATACGAACGTGCCCGCGTACGATGTTGTGTTATGATGAGATCTAACTTACTCGCCGAAGCATACGCAATGAGCTGTGTTTATGGTCGATTCGGCAGGCTGTGCTGGGTGTGTAGTGCCACAAGGGAGAGAGAAAAGAAAACAAGAAATCCAAACGTTGGTCGGTGGTTGTGTGGTGCGCTTCGTTCGCACTAAATCAACGTTGGTGGAGTGAAAATCGCACAGAACGTGACCGGAACCATGACGATTCTGTGCTCCCATCATCGTATCGTGGAAAAGGAACCGTCCAAAGTAAATCCACGCTGGAAGTCTAAGTGTAAGCTGGTGCAACTGTTTCTAAATCTTTTTCGCATGCACTGTACTTCAAACCACTTGTGGCACTTATCTTATCGTTTCGTCCTTTCAGCCTGTACCGTGTTTTCGTTGCTGATGATTGTGTCATCATGCCTGGTGGTTAGTTTCAGTTTGCACGGTCTAATTGCAGACTACAAACACCATTGTTTGCTAAAAGCAAACCTACATTTTGTGCCGATAGCAGTCGAGAACGGCTCCGATACCGGAACGAACCAAACGGATGTTCAATATGGAATCGATGAATATTGGAGCAATTGGAACAGNGGGCTG]
[+] EMBL CNS09EMR [CGATAAAGTAAACCGAGAGCGGGTCAGAAACACCGAAAGCCGTGCGTGGTTAGTGTTTTTTTGAAAATGTCACTTCTTCTCCAAGCAACCCGTCGAAGAACCAGTTTAGTTTAGGGTTGCCTCCCGTCCAAGTTCGTCGCCAGTTATCCATCCATATCCGTGTGGTTTGCAACATGATTCATACGAACGTGCCCGCGTACGATGTTGTGTTATGATGAGATCTAACTTACTCGCCGAAGCATACGCAATGAGCTGTGTTTATGGTCGATTCGGCAGGCTGTGCTGGGTGTGTAGTGCCACAAGGGAGAGAGAAAAGAAAACAAGAAATCCAAACGTTGGTCGGTGGTTGTGTGGTGCGCTTCGTTCGCACTAAATCAACGTTGGTGGAGTGAAAATCGCACAGAACGTGACCGGAACCATGACGATTCTGTGCTCCCATCATCGTATCGTGGAAAAGGAACCGTCCAAAGTAAATCCACGCTGGAAGTC ]
[-] EMBL BX610036 [ CCATCATCGTATCGTGGAAAAGGAACCGTCCAAAGTAAATCCACGCTGGAAGTGTAAGTGTAAGCTGGTGCAACTGTTTCTAAATCTTTTTCGCATGCACTGTACTTCAAACCACTTGTGGCACTTATCTTATCGTTTCGTCCTTTCAGCCTGTACCGTGTTTTCGTTGCTGATGATTGTGTCATCATGCCTGGTGGTTAGTTTCAGTTTGCACGGTCTAATTGCAGACTACAAACACCATTGTTTGCTAAAAGCAAACCTACATTTTGTGCCGATAGCAGTCGAGAACGGCTCCGA ]
[+] EMBL BX625859 [ CCATTGTTTGCTAAAAGCAAACCTACATTTTGTGCCGATAGCAGTCGAGAATGGCTCCGATACCGGAACGAACCAAACGGATGTTCAATATGGAATCGATGAATATTGGAGCAATTGGAACAGNGGGCTG]
consensusID : consensus_6271#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 587 fasta sequence
[GATCCCCCGAGTTTAGATCCAGACGCACACGGTACAGAGGTTCGTTACTATGGCTTCCATATCCGGCATACTACGATAAAGTAAACCGAGAGCGGGTCAGAAACACCAAAAGCCGTGGTTAGTGTTTTTTTCGTTCGAAAATGTCACTTCTTCTCGAAGCAACCCGCCGAAGAACCAGTTTAGTTTAGGGTTGCTTCCCGTCCAAGATCGTCGCCAGTTATCCATCCATATCCGTGTGGTTTGCAACATGATTCATACGAACGTGCCCGCGTACGATGTTGTGTTATGATGAGATCATAACTTACTCGCCGAAGCATACGCAATGAGGTAATGCGTTATTTCTAAGTCGCACCGGAATGCATACATAGGCTTAAATCCGAACGAACTCAAGGACGGGCGAGTTTTAATTTATTCATGGTTGTGCAGCTGTATTTATGGTCGATTCGGCAGGCTGTGCTGGGTGTGTAGTGCCACAAGGGAGAGAGAAAAGAAAACAAGAAATCCAAACGTTGGTCGGTGGTTGTGTGGTGCGCTTCGTTCGCACTAAATCAACGTTGGTGGAGTGAAAATCGCACAGAACGTGACCG]
[+] EMBL AL692748 [GATCCCCCGAGTTTAGATCCAGACGCACACGGTACAGAGGTTCGTTACTATGGCTTCCATATCCGGCATACTACGATAAAGTAAACCGAGAGCGGGTCAGAAACACCAAAAGCCGTGGTTAGTGTTTTTTTCGTTCGAAAATGTCACTTCTTCTCGAAGCAACCCGCCGAAGAACCAGTTTAGTTTAGGGTTGCTTCCCGTCCAAGATCGTCGCCAGTTATCCATCCATATCCGTGTGGTTTGCAACATGATTCATACGAACGTGCCCGCGTACGATGTTGTGTTATGATGAGATCATAACTTACTCGCCGAAGCATACGCAATGAGGTAATGCGTTATTTCTAAGTCGCACCGGAATGCATACATAGGCTTAAATCCGAACGAACTCAAGGACGGGCGAGTTTTAATTTATTCATGGTTGTGCAGCTGTATTTATGGTCGATTCGGCAGGCTGTGCTGGGTGTGTAGTGCCACAAGGGAGAGAGAAAAGAAAACAAGAAATCCAAACGTTGGTCGGTGGTTGTGTGGTGCGCTTCGTTCGCACTAAATCAACGTTGGTGGAGTGAAAATCGCACAGAACGTGACCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6271#0 CAGATTGCCCCAGGTTTAAGGCAGCTCCGTGGTACAGCTTGATCCAGACGCACACGGTAC 60
consensus_6271#2 -----------------------GATCCCCCGAGT--TTAGATCCAGACGCACACGGTAC 35
consensus_6271#1 ------------------------------------------------------------
consensus_6271#0 AGAGGTTCGTTACTATGTGCTTCCATATCCTGGCATACTACGATAAAGTAAACCGAGAGC 120
consensus_6271#2 AGAGGTTCGTTACTATG-GCTTCCATATCC-GGCATACTACGATAAAGTAAACCGAGAGC 93
consensus_6271#1 ----------------------------------------CGATAAAGTAAACCGAGAGC 20
********************
consensus_6271#0 GGGTCAGAAACACCAAAAGCCT---GTGGTTAGTGTTTTTAATCGTTCGAAAATGTCACT 177
consensus_6271#2 GGGTCAGAAACACCAAAAGCC----GTGGTTAGTGTTTTTT-TCGTTCGAAAATGTCACT 148
consensus_6271#1 GGGTCAGAAACACCGAAAGCCGTGCGTGGTTAGTGTTTTT------TTGAAAATGTCACT 74
************** ****** *************** * ************
consensus_6271#0 TCTTCTCGAAGCAACCCTGCCGAAGAACCAGTTTAGTTTAGGGTTGCTTCCCGTCCAAGA 237
consensus_6271#2 TCTTCTCGAAGCAACCC-GCCGAAGAACCAGTTTAGTTTAGGGTTGCTTCCCGTCCAAGA 207
consensus_6271#1 TCTTCTCCAAGCAACCC-GTCGAAGAACCAGTTTAGTTTAGGGTTGCCTCCCGTCCAAGT 133
******* ********* * *************************** ***********
consensus_6271#0 TCGTCGCCAGTTATCCATCCATATCCGTGCTGGTTTTGCAACATGATTCATACGAACGTG 297
consensus_6271#2 TCGTCGCCAGTTATCCATCCATATCCGTGTGG--TTTGCAACATGATTCATACGAACGTG 265
consensus_6271#1 TCGTCGCCAGTTATCCATCCATATCCGTGTGG--TTTGCAACATGATTCATACGAACGTG 191
***************************** * **************************
consensus_6271#0 CCCTGCGTACGATGTTCGTGTCCATGACTGAGCATCATAACTTACCTCGCCGGAAGCATA 357
consensus_6271#2 CCC-GCGTACGATGTT-GTGTT-ATGA-TGAG-ATCATAACTTAC-TCGCCG-AAGCATA 318
consensus_6271#1 CCC-GCGTACGATGTT-GTGTT-ATGA-TGAG-ATC-TAACTTAC-TCGCCG-AAGCATA 243
*** ************ **** **** **** *** ******** ****** *******
consensus_6271#0 CGCAACTGAGGTAACTGCGTANACTATCTAAGGTCGCACCGGAATTGCATACANTAGCCT 417
consensus_6271#2 CGCAA-TGAGGTAA-TGCGTTA--TTTCTAAG-TCGCACCGGAAT-GCATACAT-AGGCT 371
consensus_6271#1 CGCAA-TGAGCTG-----------TGTTTATGGTCGATTCGGCAGGCTGTGCTGGGTGTG 291
***** **** * * * ** * *** *** * * *
consensus_6271#0 TAACATCCGAANCGAAACTCAAAGGGACGGGCGAGTNTACTCTAAANTTTCTCNATTTCA 477
consensus_6271#2 TAA-ATCCGAAC--GAACTCAA--GGACGGGCGAGTTTT------AATTTATTCAT---- 416
consensus_6271#1 TAGTGCCACAAGGGAGAGAGAAAAGAAAACAAGAAATCC---AAACGTTGGTCGGT---- 344
** * ** * ** * * ** ** * *
consensus_6271#0 TGGGTCTGTGCCAAGCCTTGTATTCTTCAATGGTACGAATTTCGGGCCAGAGCTGTGCCT 537
consensus_6271#2 ---GGTTGTGC--AGC--TGTATTT----ATGGT-CGA--TTCGG--CAG-GCTGTGCTG 459
consensus_6271#1 -GGTTGTGTGGTGCGCTTCGTTCGCACTAAATCAACGTTGGTGGAGTGAAAATCGCACAG 403
**** ** ** * ** * * * * *
consensus_6271#0 AGGAGTTGTGCTAGTGGCCCC-ACAAATGGGTGGCAAGNAGGAAGNANACACAAGGNAAA 596
consensus_6271#2 GG----TGTG-TAGTG-CCAC-AAGGGAGAGAGAAAAGAAAACAAGAAATCCAAACGTTG 512
consensus_6271#1 AA----CGTGACCGGAACCATGACGATTCTGTGCTCCCATCATCGTATCGTGGAAAAGGA 459
*** * ** * * * * *
consensus_6271#0 ACAAACCAAACGGCAAAAATTTCCAAACACACCGGTTATGGGTTACGGNGATTTGGGGTT 656
consensus_6271#2 GTCGGTGGTTGTGTGGTGCGCTTCGTTCGCACTAAATCAACGTTG-GTGGAGTGAAAATC 571
consensus_6271#1 ACCGTCCAAA--GTAAATCCACGCTGGAAGTCTAAGTGTAAGCTGGTGCAACTGTTTCTA 517
* * * * * * * * *
consensus_6271#0 ACATNGGTAGGTAGGNGTTGGCCGGCCTTATACGGTTTACCGGCAACCTTTAAAAAATTC 716
consensus_6271#2 GCACAGA-ACGTGACCG------------------------------------------- 587
consensus_6271#1 AATCTTTTTCGCATGCACTGT---ACTTCAAACCACTTGTGGCACTTATCTTATCGTTTC 574
*
consensus_6271#0 CCAAAGCCTGGTTATAGCGCGATGGGAACGTTCGACACACAATTCCGNCAACCAGCAAAG 776
consensus_6271#2 ------------------------------------------------------------
consensus_6271#1 GTCCTTTCAGCCTGTACCGTGTTTT---CGTT--GCTGATGATTGTGTCATCATGCCTGG 629
consensus_6271#0 CAGCTGGTTGGAACCCGGGGACAACCAATTG--GAACA-GAATANCCTAGTTGACNTCAC 833
consensus_6271#2 ------------------------------------------------------------
consensus_6271#1 TGGTTAGTTTCAGTTTGCACG-GTCTAATTGCAGACTACAAACACCATTGTTTGCTAAA- 687
consensus_6271#0 ACCAAGTCCAAANTCCCCGATAAATATTCCCAGGTTAGGTCACATAAACACAACACAGAN 893
consensus_6271#2 ------------------------------------------------------------
consensus_6271#1 AGCAAACCTACATTTTGTGCCGA----TAGCAGTCGAGA----ACGGCTCCGATACCGGA 739
consensus_6271#0 GGGAAAAAAACNATCCATGGGTATG-ATNCACTCAAAAACAAAGTGGTTACACTAGACAA 952
consensus_6271#2 ------------------------------------------------------------
consensus_6271#1 ACGAACCAAACGGATGTTCAATATGGAATCGATGAATATTGGAGCAATTGGAACAGNGGG 799
consensus_6271#0 NTTTACCGACCCAAACGAGAGCGTTTNGGGNGTGGAACAAGCAGCGGTTTCTGGGGTTAA 1012
consensus_6271#2 ------------------------------------------------------------
consensus_6271#1 CTG--------------------------------------------------------- 802
consensus_6271#0 ACAAAGGTTTCCCCCACTTTAGGGATGACACGACCCCCCAGGAGATTAGGATNTAAANNT 1072
consensus_6271#2 ------------------------------------------------------------
consensus_6271#1 ------------------------------------------------------------
consensus_6271#0 NATAGNCACAGAGNTAAAATAAAGGAGCTTGTTAGNGAATTTTGCGNACN 1122
consensus_6271#2 --------------------------------------------------
consensus_6271#1 --------------------------------------------------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||