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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6274#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1197 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGGTGGGCTTCAACGTCAAGAACGTGTCGGTGAAGGAGCTGCGTCGTGGCTACGTCGCCGGCGACTCGAAGAACGCCCCGCCCAAGGGCGCCGCCGACTTCACTGCCCAGGTCATCGTGCTGAACCACCCGGGACAGATCAGCAACGGATACACCCCGGTGCTGGATTGCCACACCGCTCACATTGCGTGCAAGTTCTCCGAGATCAAGGAGAAGGTCGATCGTCGTTCCGGCAAGTCGACCGAGGACAACCCCAAGTTCATCAAGTCGGGCGATGCCGCCATCGTCATCCTGGTGCCGTCGAAGCCGCTGTGCGTCGAGTCCTTCCAGGAGTTCCCGCCGCTCGGCCGTTTCGCCGTGCGTGACATGCGACAGACCGTCGCCGTCGGTGTCATCAAGGCAGTCAGCTTCAAGGATGCTGCCGGTGGTAAGGTCACCAAGGCCGCTGAGAAGGCCACCAAGGGCAAGAAATAGCCGCCAACTGGTGCGCCTGATCATACGATGCTTAGTAGCAACAACGCCGCCAACAACAACAACAGAAAAGATGATGCAACCCTTATTACCGACCACCACCACATCCTCGAGAAGAAACAACAGCACGACCACCAACTAGCGCTTTCCTCCGGCGGGAGCACACCATCGTCCTCTTCCTCATCGCCCGTGGCTGACTACGGCAGCAGCGGCGGCGCCGGTGAAGTTGACGAACAGCAGCAGCAGCAACACAAGCAGCCACAACATCCTGGCAGTGGTGGCTGTGGCCAGAGCCGCCCCAATGGACGACGGAATGCAGCAGCACGGTGACGCGATGATGGTGATGCTGGTGGACGATCCGATGATGCACGAGCAGCAGCCGCAAACGCTGGAGGATATGGTTGCGGTTTACGATCAGCCTGAGATGGATTCGATGGGCGAAATGGCACGGGAGAAGCGGCACCATCGATATGGCGGCGGCTACGGAGGCTATGGCGGCTACGGTGGTGGCTTCGGAGGATACAGAGGAGGATACGGTGGCTACCGGGGTGGGTACGGCGGTTATGGCGGCTTCCGTGGTGGATATGGTGGATATCGTCGGGGTGGATTCCACTGAGCATCCAGCGCTGTATGAGCTGTAAAGTGTAAAATAACAAAAAAATAAAAATAAAAAAAGAAACTTAATAAAGAACGATTGTGATA]
[+] EMBL BM610559 [CCGCCCACGCGTCCGCCCACGCGTCCGGTGGGCTTCAACGTCAAGAACGTGTCGGTGAAGGAGCTGCGTCGTGGCTACGTCGCCGGCGACTCGAAGAACGCCCCGCCCAAGGGCGCCGCCGACTTCACTGCCCAGGTCATCGTGCTGAACCACCCGGGACAGATCAGCAACGGATACACCCCGGTGCTGGATTGCCACACCGCTCACATTGCGTGCAAGTTCTCCGAGATCAAGGAGAAGGTCGATCGTCGTTCCGGCAAGTCGACCGAGGACAACCCCAAGTTCATCAAGTCGGGCGATGCCGCCATCGTCATCCTGGTGCCGTCGAAGCCGCTGTGCGTCGAGTCCTTCCAGGAGTTCCCGCCGCTCGGCCGTTTCGCCGTGCGTGACATGCGACAGACCGTCGCCGTCGGTGTCATCAAGGCAGTCAGCTTCAAGGATGCTGCCGGTGGTAAGGTCACCAAGGCCGCTGAGAAGGCCACCAAGGGCAAGAAATAGCCGCCAACTGGTGCGCCTGATCATACGATGCTTAGTAGCAACAACGCCGCCAACAACAACAACAGAAAAGATGATGCAACCCTTATTACCGACCACCACCACATCCTCGAGAAGAAACAACAGCACGACCACCAACTAGCGCTTTCCTCCGGCGGGAGCACACCATCGTCCT ]
[+] EMBL BX608504 [ AAAGATGATGCAACCCTTATTACCGACCACCACCACATCCTCGAGAAGAAACAACAGCACGACCACCAACTAGCGCTTTCCTCCGGCGGCAGCACACCATCGTCCTCTTCCTCATCGCCCGTGGCTGACTACGGCAGCAGCGGCGGCGCCGGTGAAGTTGACGAACAGCAGCAGCAGCAACACAAGCAGCCACAACATCCTGGCAGTGGTGGCTGTGGCCAGAGCCGCCCCAATGGACGACGGAATGCAGCAGCACGGTGACGCGATGATGGTGATGCTGGTGGACGATCCGATGATGCACGAGCAGCAGCCGCAAACGCTGGAGGATATGGTTGCGGTTTACGATCAGCCTGAGATGGATTCGATGGGCGAAATGGCACGGGAGAAGCGGCACCATCGATATGGCGGCGGCTACGGAGGCTATGGCGGCTACGGTGGTGGCTTCGGAGGATACAGAGGAGGATACGGTGGCTACCGGGGTGGGTACGGCGGTTATGGCGGCTTCCGTGGTGGATATGGTGGATATCGTCGGGGTGGATTCCACTGAGCATCCAGCGCTGTATGAGCTGTAAAGTGTAAAATAACAAAAAAATAAAAATAAAAAAAGAAACTTAATAAAGAACGATTGTGATA]
consensusID : consensus_6274#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 660 fasta sequence
[CCGCGGACGCGTGGGTGCGGTGGCACGTACCTGCAATCTGATTTTCATGGTGCTGGACGTGCTGAAACCGCTCACGCACAAGAAGCTGCTCGAGCACGAGTTGGAAGGGTTCGGGCTGCGGCTGAACAAGCAGCCGCCGAACATTTCCTACCGCCGGAAGGACAAGGGTGGAGTGAACCTGAACGCCACCGTAGCACAGTCGGAGCTGGACCTGGACACGGTGAAGACGATTCTGGGCGAGTACAAGATTCATAATGCGGACATTACGCTGAAGTACGATGCGACGGCGGACGATCTGATCGACGTGATCGAGGGCAACCGCATTTACATCCCGTGCATCTATCTGCTGAACAAGATCGATCAGATTTCGATCGAGGAGCTGGACGTCATCTATAAAATCCCGCACTGCGTACCAATCTCTGCCCATCACCACTGGAACTTTGACGATTTGCTCGATATGATGTGGCAGTATCTGAAGCTGGTGCGAATCTATACCAAACCGAAGGGCCAGCTGCCGGACTACAGCTCACCGATTGTGCTGCACCACGAGCATACTACCGTGGAAAGTTTCTGTAACAAGCTTCACCGAACGATTGCGAAAGAATTTAAATATGCACTTGTGTGAGGGTTCGTCCGTCAAGCATCAACCGCAAAAGGTCG]
[+] EMBL BM612673 [CCGCGGACGCGTGGGTGCGGTGGCACGTACCTGCAATCTGATTTTCATGGTGCTGGACGTGCTGAAACCGCTCACGCACAAGAAGCTGCTCGAGCACGAGTTGGAAGGGTTCGGGCTGCGGCTGAACAAGCAGCCGCCGAACATTTCCTACCGCCGGAAGGACAAGGGTGGAGTGAACCTGAACGCCACCGTAGCACAGTCGGAGCTGGACCTGGACACGGTGAAGACGATTCTGGGCGAGTACAAGATTCATAATGCGGACATTACGCTGAAGTACGATGCGACGGCGGACGATCTGATCGACGTGATCGAGGGCAACCGCATTTACATCCCGTGCATCTATCTGCTGAACAAGATCGATCAGATTTCGATCGAGGAGCTGGACGTCATCTATAAAATCCCGCACTGCGTACCAATCTCTGCCCATCACCACTGGAACTTTGACGATTTGCTCGATATGATGTGGCAGTATCTGAAGCTGGTGCGAATCTATACCAAACCGAAGGGCCAGCTGCCGGACTACAGCTCACCGATTGTGCTGCACCACGAGCATACTACCGTGGAAAGTTTCTGTAACAAGCTTCACCGAACGATTGCGAAAGAATTTAAATATGCACTTGTGTGAGGGTTCGTCCGTCAAGCATCAACCGCAAAAGGTCG]
consensusID : consensus_6274#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 621 fasta sequence
[CCGGTCGACCACCACCGGCCATTTGATCTACAAATGCGGCGGTATCGACAAGCGTACGATTGAGAAGTTCGAGAAGGAAGCTCAGGAGATGGGCAAGGGCTCGTTCAAGTACGCCTGGGTGCTGGACAAGCTGAAGGCCGAGCGCGAGCGTGGTATCACCATCGATATTGCGCTGTGGAAGTTCGAAACCTCCAAGTACTACGTCACCATCATCGACGCCCCCGGACATCGTGATTTCATCAAGAACGTGTCGGTGAAGGAGCTGCGTCGTGGCTACGTCGCCGGTGACTCGAAGAACGCCCCGCCCAAGGGCGCCGCCGACTTCACTGCCCAGGTCATCGTGCTGAACCACCCGGGACAGATCAGCAACGGATACACCCCGGTGCTGGATTGCCACACCGCTCACATTGCGTGCAAGTTCTCCGAGATCAAGGAGAAGGTCGATCGTCGTTCCGGCAAGTCGACCGAGGACAACCCCAAGTTCATCAAGTCGGGCGATGCCGCCATCGTCATCCTGGTGCCGTCGAAGCCGCTGTGCGTCGAGTCCTTCCAGGAGTTCCCGCCGCTCGGCCGTTTCGCCGTGCGTGACATGCGACAGACCGTCGCCGTCGGTGTCATCAA]
[+] EMBL BM657272 [CCGGTCGACCACCACCGGCCATTTGATCTACAAATGCGGCGGTATCGACAAGCGTACGATTGAGAAGTTCGAGAAGGAAGCTCAGGAGATGGGCAAGGGCTCGTTCAAGTACGCCTGGGTGCTGGACAAGCTGAAGGCCGAGCGCGAGCGTGGTATCACCATCGATATTGCGCTGTGGAAGTTCGAAACCTCCAAGTACTACGTCACCATCATCGACGCCCCCGGACATCGTGATTTCATCAAGAACGTGTCGGTGAAGGAGCTGCGTCGTGGCTACGTCGCCGGTGACTCGAAGAACGCCCCGCCCAAGGGCGCCGCCGACTTCACTGCCCAGGTCATCGTGCTGAACCACCCGGGACAGATCAGCAACGGATACACCCCGGTGCTGGATTGCCACACCGCTCACATTGCGTGCAAGTTCTCCGAGATCAAGGAGAAGGTCGATCGTCGTTCCGGCAAGTCGACCGAGGACAACCCCAAGTTCATCAAGTCGGGCGATGCCGCCATCGTCATCCTGGTGCCGTCGAAGCCGCTGTGCGTCGAGTCCTTCCAGGAGTTCCCGCCGCTCGGCCGTTTCGCCGTGCGTGACATGCGACAGACCGTCGCCGTCGGTGTCATCAA]
consensusID : consensus_6274#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 167 fasta sequence
[AAGAAAATCGTGCTGCGTATGGAATGTGTCCAGTGCAAGTACCGCATGCAGACCCCACTGAAGCGCTGCATACACTTCGAGCTCAGCGGTGACGAAAAGCGCAAGGGACAGATGATCCAGATCTAACCTGTTATCTATCGCCTCCGGAACGTGCGTTGGCGCATTCG]
[+] EMBL BM634428 [AAGAAAATCGTGCTGCGTATGGAATGTGTCCAGTGCAAGTACCGCATGCAGACCCCACTGAAGCGCTGCATACACTTCGAGCTCAGCGGTGACGAAAAGCGCAAGGGACAGATGATCCAGATCTAACCTGTTATCTATCGCCTCCGGAACGTGCGTTGGCGCATTCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6274#0 ------------------------------------------------------------
consensus_6274#2 CCGGTCGACCACCACCGGCCATTTGATCTACAAATGCGGCGGTATCGACAAGCGTACGAT 60
consensus_6274#3 ------------------------------------------------------------
consensus_6274#1 ------------------------------------------------------------
consensus_6274#0 ------------------------------------------------------------
consensus_6274#2 TGAGAAGTTCGAGAAGGAAGCTCAGGAGATGGGCAAGGGCTCGTTCAAGTACGCCTGGGT 120
consensus_6274#3 ------------------------------------------------------------
consensus_6274#1 ------------------------------------------------------------
consensus_6274#0 ------------------------------------------------------------
consensus_6274#2 GCTGGACAAGCTGAAGGCCGAGCGCGAGCGTGGTATCACCATCGATATTGCGCTGTGGAA 180
consensus_6274#3 ------------------------------------------------------------
consensus_6274#1 ---------------------------------------CCGCGGACGCGTGGGTGCGGT 21
consensus_6274#0 -----------------CCGCCCACGCGTCCGCCCACGCGTCCGGTGGGCTTCAA--CGT 41
consensus_6274#2 GTTCGAAACCTCCAAGTACTACGTCACCATCATCGACGCCCCCGGACATCGTGATTTCAT 240
consensus_6274#3 ----------------------------------------------------------AA 2
consensus_6274#1 GGCACGTACCTGCAATCTGATTTTCATGGTGCTGGACGTGCTGAAACCGCTCACGCACAA 81
consensus_6274#0 CAAGAA-CGTGTCGGTGAAGGAGCTGCGTCGTGGCTACGTC---GCCGGCGACT-CGAAG 96
consensus_6274#2 CAAGAA-CGTGTCGGTGAAGGAGCTGCGTCGTGGCTACGTC---GCCGGTGACT-CGAAG 295
consensus_6274#3 GAAAAT-CGTGCTG-CGTATGGAATGTGTC-------CAGT---GCAAGT-ACC-GCATG 48
consensus_6274#1 GAAGCTGCTCGAGCACGAGTTGGAAGGGTTCGGGCTGCGGCTGAACAAGCAGCCGCCGAA 141
** * * * * ** * * * *
consensus_6274#0 AACGCCCCGCC-CAAGGGCGCCGCCGACTTCACTGCCCAGGTCATCGTGCTGAACCACCC 155
consensus_6274#2 AACGCCCCGCC-CAAGGGCGCCGCCGACTTCACTGCCCAGGTCATCGTGCTGAACCACCC 354
consensus_6274#3 CAGACCCCACT-GAAGCGCTGCATACACTTCGA-GCTCAG--CGGTGACGAAAAGCGCAA 104
consensus_6274#1 CATTTCCTACCGCCGGAAGGACAAGGGTGGAGTGAACCTGAACGCCACCGTAGCACAGTC 201
* ** * * * * * * *
consensus_6274#0 GGGACAGATCAGCAACGGATACACCCCGGTGCTGGATTGCCACACCGCTCACATTGCGTG 215
consensus_6274#2 GGGACAGATCAGCAACGGATACACCCCGGTGCTGGATTGCCACACCGCTCACATTGCGTG 414
consensus_6274#3 GGGACAGATGATC--CAGATCTAACCTGTTATCTATCGCCTCCGGAACGTGCGTTG---G 159
consensus_6274#1 GGAGCTGGACCTGGACACGGTGAAGACGATTCTGGGCGAGTACAAGATTCATAATGCGGA 261
** * * * * * * * **
consensus_6274#0 CAAGTTCTCCGAGATCAAGGAGAAGGTCGATCGTCGTTCCGGCAAGTCGACCGAGGACAA 275
consensus_6274#2 CAAGTTCTCCGAGATCAAGGAGAAGGTCGATCGTCGTTCCGGCAAGTCGACCGAGGACAA 474
consensus_6274#3 CGCATTCG---------------------------------------------------- 167
consensus_6274#1 CATTACGCTGAAGTACGATGCGACGGCGGACGATCTGATCGACG---TGATCGAGGGCAA 318
*
consensus_6274#0 CCCCAAGTTCATCAAGTCGGGCGATGCCGCCATCGTCATCCTGGTGCCGTCGAAGCCGCT 335
consensus_6274#2 CCCCAAGTTCATCAAGTCGGGCGATGCCGCCATCGTCATCCTGGTGCCGTCGAAGCCGCT 534
consensus_6274#3 ------------------------------------------------------------
consensus_6274#1 CCGCATTTACATCCCGTGCATCTATCTGCTGAACAAGATCGATCAGATTTCGA--TCGAG 376
consensus_6274#0 GTGCGTCGAGTCCTTCCAGGAGTTCCCGCCGCTCGGCCGTTTCGCCGTGCGTGACATGCG 395
consensus_6274#2 GTGCGTCGAGTCCTTCCAGGAGTTCCCGCCGCTCGGCCGTTTCGCCGTGCGTGACATGCG 594
consensus_6274#3 ------------------------------------------------------------
consensus_6274#1 GAGC-TGGACGTCATCTATAAAATCCCGCACTGCGTACCAATCTCTGCCCATCACCACTG 435
consensus_6274#0 ACAGACCGTCGCCGTCGGTGTCATCAAGGCAGTCAGCTTCAAGGATGCTGCCGGTGGTAA 455
consensus_6274#2 ACAGACCGTCGCCGTCGGTGTCATCAA--------------------------------- 621
consensus_6274#3 ------------------------------------------------------------
consensus_6274#1 GAACTTTGACGATTTGCTCGATAT-GATGTGGCAGTATCTGAAGCTGGTGCGAATCTATA 494
consensus_6274#0 GGTCACCAAGGCCGCTGAGAAGGCCACCAAGGGCAAGAAATAGCCGCCAACTGGTGCGCC 515
consensus_6274#2 ------------------------------------------------------------
consensus_6274#3 ------------------------------------------------------------
consensus_6274#1 CCAAACCGAAGGGCCAGCTGCCGGACTACAGCTCACCGATTGTGCTGCACCACGAGCATA 554
consensus_6274#0 TGATCATACGATGCTTAGTAGCAACAACGCCGCCAACAACAACAACAGAAAAGATGATGC 575
consensus_6274#2 ------------------------------------------------------------
consensus_6274#3 ------------------------------------------------------------
consensus_6274#1 CTACCGTGGAAAGTTTCTGTAACAAGCTTCACCGAACGATTGCGAAAGAATTTAAATATG 614
consensus_6274#0 AACCCTTATTACCGACCACCACCACATCCTCGAGAAGAAACAACAGCACGACCACCAACT 635
consensus_6274#2 ------------------------------------------------------------
consensus_6274#3 ------------------------------------------------------------
consensus_6274#1 CACTTGTGTGAGGGTTCGTCCGTCAAGCATCAACCGCAAAAGGTCG-------------- 660
consensus_6274#0 AGCGCTTTCCTCCGGCGGGAGCACACCATCGTCCTCTTCCTCATCGCCCGTGGCTGACTA 695
consensus_6274#2 ------------------------------------------------------------
consensus_6274#3 ------------------------------------------------------------
consensus_6274#1 ------------------------------------------------------------
consensus_6274#0 CGGCAGCAGCGGCGGCGCCGGTGAAGTTGACGAACAGCAGCAGCAGCAACACAAGCAGCC 755
consensus_6274#2 ------------------------------------------------------------
consensus_6274#3 ------------------------------------------------------------
consensus_6274#1 ------------------------------------------------------------
consensus_6274#0 ACAACATCCTGGCAGTGGTGGCTGTGGCCAGAGCCGCCCCAATGGACGACGGAATGCAGC 815
consensus_6274#2 ------------------------------------------------------------
consensus_6274#3 ------------------------------------------------------------
consensus_6274#1 ------------------------------------------------------------
consensus_6274#0 AGCACGGTGACGCGATGATGGTGATGCTGGTGGACGATCCGATGATGCACGAGCAGCAGC 875
consensus_6274#2 ------------------------------------------------------------
consensus_6274#3 ------------------------------------------------------------
consensus_6274#1 ------------------------------------------------------------
consensus_6274#0 CGCAAACGCTGGAGGATATGGTTGCGGTTTACGATCAGCCTGAGATGGATTCGATGGGCG 935
consensus_6274#2 ------------------------------------------------------------
consensus_6274#3 ------------------------------------------------------------
consensus_6274#1 ------------------------------------------------------------
consensus_6274#0 AAATGGCACGGGAGAAGCGGCACCATCGATATGGCGGCGGCTACGGAGGCTATGGCGGCT 995
consensus_6274#2 ------------------------------------------------------------
consensus_6274#3 ------------------------------------------------------------
consensus_6274#1 ------------------------------------------------------------
consensus_6274#0 ACGGTGGTGGCTTCGGAGGATACAGAGGAGGATACGGTGGCTACCGGGGTGGGTACGGCG 1055
consensus_6274#2 ------------------------------------------------------------
consensus_6274#3 ------------------------------------------------------------
consensus_6274#1 ------------------------------------------------------------
consensus_6274#0 GTTATGGCGGCTTCCGTGGTGGATATGGTGGATATCGTCGGGGTGGATTCCACTGAGCAT 1115
consensus_6274#2 ------------------------------------------------------------
consensus_6274#3 ------------------------------------------------------------
consensus_6274#1 ------------------------------------------------------------
consensus_6274#0 CCAGCGCTGTATGAGCTGTAAAGTGTAAAATAACAAAAAAATAAAAATAAAAAAAGAAAC 1175
consensus_6274#2 ------------------------------------------------------------
consensus_6274#3 ------------------------------------------------------------
consensus_6274#1 ------------------------------------------------------------
consensus_6274#0 TTAATAAAGAACGATTGTGATA 1197
consensus_6274#2 ----------------------
consensus_6274#3 ----------------------
consensus_6274#1 ----------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||