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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6284#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1139 fasta sequence
[ATATTTTTAAAAGCCACACTCTTCCCTCACAGCAACACAGCAACACCATCGTCGCACTGTGTGAGCGTGTGCGTTCTGTTTGTGTGTGTGAGTGTGTGGCCATAGACATATATTTGTAGCTTAAGCTGGCCGACCCGTTAGGCCTCCCAAACGCGCCCACGTGCAGCAGCTGCAGCTGCAACTGGCAGGGCGTGGACGGACGGGCAAGAACCGATTTGTGTTTTTATCTGGACACCTTTGTACTACCAAACCAGCTGGATAGATTGTTAGACTGTTGTTCCAAGTTGTGTTAGTTGGTGTTTATTTGGCCCTTGTTAAAGTGTTTAGTGGTTAAGAGCAGCGATTCAAACAGCGATAGAGCGACAAACACAGAAGAAAAAAAAACAACCGAGGAAGGTGAGAGAAAACAAATAGAACGAATAACAAATCAGAAATGTTGATGGAATGAAGAAAACAAAAAAAGGATATTAAAAAAGAAAGTTAAGTGGTAAGA--ACACACACACACACAGGAGGGTCATGTTGAAGAAAGAGATAAAAAGGCATGCGAAAAAGAGAATGGCCCCGTGTGATGCAAACAAGGGTTGCTGCGCGTTAAAGCACAACACCACACCAAAACAGACAAACAATATATATTCATCACAGACAGTCCGGAGCGAGAAACCATCAACAGCAACCTAACTACTATTAGTACTACTACTATTACTAACACTACCACTACTACTACTACTACTACTACTTTGTCGTTTGTCGAGGGGAAAGAAGGGTTTTATTGCATTTCTTCACCCAACCCTGTAGCTAAAAACAAAATCAGTTGGGATAACGGAAGAAACTGGTAATATGTTGGGTGTAGCAAAGAAGGGTGCGATATGCGCACAGAGACAAACGAGAGAAAACGCAAACGCAAGCAAAACAATAGCAAAAGAAAAGAGAGAGAAAAACACAGAAAACTATCACACTACGCGTAAACTACTAAAACAAATGTGAAGCAAAATGGAAACAAAGCAAAAAACAAACAAACAAACAAACAAACATATTAAATAATCTGGTTATACGAGAAAGAGAGAGAAAGAGCGCGCGATGATGCAGCTTTGCTGAATAGCATTTAATAATCTCAATAAATTCGTTCATTGTGTAACTGA]
[+] EMBL BX621631 [ATATTTTTAAAAGCCACACTCTTCCCTCACAGCAACACAGCAACACCATCGTCGCACTGTGTGAGCGTGTGCGTTCTGTTTGTGTGTGTGAGTGTGTGGCCATAGACATATATTTGTAGCTTAAGCTGGCCGACCCGTTAGGCCTCCCAAACGCGCCCACGTGCAGCAGCTGCAGCTGCAACTGGCAGGGCGTGGACGGACGGGCAAGAACCGATTTGTGTTTTTATCTGGACACCTTTGTACTACCAAACCAGCTGGATAGATTGTTAGACTGTTGTTCCAAGTTGTGTTAGTTGGTGTTTATTTGGCCCTTGTTAAAGTGTTTAGTGGTTAAGAGCAGCGATTCAAACAGCGATAGAGCGACAAACACAGAAGAAAAAAAAACAACCGAGGAAGGTGAGAGAAAACAAATAGAACGAATAACAAATCAGAAATGTTGATGGAATGAAGAAAACAAAAAAAGGATATTAAAAAAGAAAGTTAAGTGGTAAGA ACACACACACACACAGGAGGGTCATGTTGAAGAAAGAGATAAAAAGGCATGCGAAAAAGAGAATGGCCCCGTGTGATGCAAACAAGGGTTGCTGCGCGTTAAAGCACAACACCACACCAAAACAGACAAACAATATATATTCATCACAGACAGTGCGGAACGGGAAACCATCAACAGCAACCTAACTACTATTAGTACTACTACTATTACTAACACTACC ACTACTACTACTACTACTACTTTGTCGTTTGTCGAGGGGAAAGAAGGGNTTTATTGCATTTCTTCACCCAACCCTGT ]
[+] EMBL BX625697 [ AGAACGAATAACAAATCAGAAATGTTGATGGAATGAAGAAAACAAAAAAAGGATATTAAAAAAGAAAGTTAAGTGGTAAGAACACACACACACACACAGGAGGGTCATGTTGAAGAAAGAGATAAAAAGGCATGCGAAAAAGAGAATGGCCCCGTGTGATGCAAAAAAGGGTTGCTGCGCGTTAAAGCACAACACCACACCAAAACAGACAAACAATATATATTCATCACAGACAGTCCGGAGCGAGAAACCATCAACAGCAACCTAACTACTATTAGTACTACTACTATTACTAACACTACCACTACTACTACTACTACTACTACTTTGTCGTTTGTCGAGGGGAAAGAAGGGTTTTATTGCATTTCTTCACCCAACCCTGTAGCTAAAAACAAAATCAGTTGGGATAACGGAAGAAACTGGTAATATGTTGGGTGTAGCAAAGAAGGGTGCGATATGCGCACAGAGACAAACGAGAGAAAACGCAAACGCAAGCAAAACAATAGCAAAAGAAAAGAGAGAGAAAAACACAGAAAACTATCACACTACGCGTAAACTACTAAAACAAATGTGAAGCAAAATGGAAACAAAGCAAAAAACAAACAAACAAACAAACAAACATATTAAATAATCTGGTTATACGAGAAAGAGAGAGAAAGAGCGCGCGATGATGCAGCTTTGCTGAATAGCATTTAATAATCTCAATAAATTCGTTCATTGTGTAACTGA]
[+] EMBL BX617226 [ GCTGCGCGTTAAAGCACAACACCACACCAAAACAGACAAACAATATATATTCATCACAGACAGTCCGGAGCGAGAAACCATCAACAGCAACCTAACTACTATTAGTACTACTACTATTACTAACACTACCACTACTACTACTACTACTACTACTTTGTCGTTTGTCGAGGGGAAAGAAGGGTTTTATTGCATTTCTTCACCCAACCCTGTAGCTAAAAACAAAATCAGTTGGGATAACGGAAGAAACTGGTAATATGTTGGGTGTAGCAAAGAAGGGTGCGATATGCGCACAGAGACAAACGAGAGAAAACGCAAACGCAAGCAAAACAATAGCAAAAGAAAAGAGAGAGAAAAACACAGAAAACTATCACACTACGCGTAAACTACTAAAACAAATGTGAAGCAAAATGGAAACAAAGCAAAAAACAAACAAACAAACAAACAAACATATTAAATAATCTGGTTATACGAGAAAGAGAGAGAAAGAGCGCGCGATGATGCAGCTTTGCTGAAT ]
consensusID : consensus_6284#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 750 fasta sequence
[ATCGCCCCAGGGTTTAGGAATCACTAATACAATATTTATTATGTGGTCTATGAATGTGATCTACTATATTTAAAAAAAATGAGAAGAAAAAAAACAGAGAAAAAGTAACAGCAAAACAAAACCTAGTACTAAACTTAAGTAGGTGTTTAGTGGTTAAGAGCAGCGATTCAAACAGCGATAGAGCGACAAACACAGAAG-AAAAAAAAACAACCGAGGAAGGTGAGAGAAAACAAATAGAACGAATAACAAATCAGAAATGTTGATGGAATGAAGAAAACAAAAAAAGGATATTAAAAAAGAAAGTTAAGTGGTAAGAACACACA--CACACACAGGAGGGTCATGTTGAAGAAAGAGATAAAAAGGCATGCGAAAAAGAGAATGGCCCCGTGTGATGCAAACAAGGGTTGCTGCGCGTTAAAGCACAACACCACACCAAAACAGACAAACAATATATATTCATCACAGACAGTGCGGATCGAGAAACCATCAACAGCAACCTAACTACTATTAGTACTACTACTATTACTAACACTACCACTACTACTACTACTACTACTACTTTGTCGTTTGTCGAGGGGAAAGAAGGGTTTTATTGCATTTCTTCACCCAACCCTGTAGCTAAAAACAAAATCAGTTGGGATAACGGAAGAAACTGGTAATATGTTGGGTGTAGCAAAGAAGGGTGCGATATGCGCACAGAGACAAACGAGAGAAAACGCAAACGCAAGCAAAACAATAGCAAAAGAAAAG]
[+] EMBL AL932590 [ATCGCCCCAGGGTTTAGGAATCACTAATACAATATTTATTATGTGGTCTATGAATGTGATCTACTATATTTAAAAAAAATGAGAAGAAAAAAAACAGAGAAAAAGTAACAGCAAAACAAAACCTAGTACTAAACTTAAGTAGGTGTTTAGTGGTTAAGAGCAGCGATTCAAACAGCGATAGAGCGACAAACACAGAAG AAAAAAAAACAACCGAGGAAGGTGAGAGAAAACAAATAGAACGAATAACAAATCAGAAATGTTGATGGAATGAAGAAAACAAAAAAAGGATATTAAAAAAGAAAGTTAAGTGGTAAGAACACACA CACACACAGGAGGGTCATGTTGAAGAAAGAGATAAAAAGGCATGCGAAAAAGAGAATGGCCCCGTGTGATGCAAACAAGGGTTGCTGCGCGTTAAAGCACAACACCACACCAAAACAGACAAACAATATATATTCATCACAGACAGTGC ]
[+] EMBL BX615097 [ CCTAGTACTAAACTTAAGTAGGTGTTTAGTGGTTAAGAGCAGCGATTCAAACAGCGATAGAGCGACAAACACAGAAGAAAAAAAAAACAACCGAGGAAGGTGAGAGAAAACAAATAGAACGAATAACAAATCAGAAATGTTGATGGAATGAAGAAAACAAAAAAAGGATATTAAAAAAGAAAGTTAAGTGGTAAGAACACACACGCACACACAGGAGGGTCATGTTGAAGAAAGAGATAAAAAGGCATGCGAAAAAGAGAATGGCCCCGTGTGATGCA AAGGGTTGCTGCGCGTTAAAGCACAACACCACACCAAAACAGACAAACAATATATATTCATCACAGACAGTCCGGATCGAGAAACCATCAACAGCAACCTAACTACTATTAGTACTACTACTATTACTAACACTACCACTACTACTACTACTACTACTACTTTGTCGTTTGTCGAGGGGAAAGAAGGGTTTTATTGCATTTCTTCACCCAACCCTGTAGCTAAAAACAAAATCAGTTGGGATAACGGAAGAAACTGGTAATATGTTGGGTGTAGCAAAGAAGGGTGCGATATGCGCACAGAGACAAACGAGAGAAAACGCAAACGCAAGCAAAACAATAGCAAAAGAAAAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6284#0 ATATTTTTAAAAGCCACACTCTTCCCTCACAGCAACACAGCAACACCATCGTCGCACTGT 60
consensus_6284#1 ------------------------------------------------------------
consensus_6284#0 GTGAGCGTGTGCGTTCTGTTTGTGTGTGTGAGTGTGTGGCCATAGACATATATTTGTAGC 120
consensus_6284#1 ------------------------------------------------------------
consensus_6284#0 TTAAGCTGGCCGACCCGTTAGGCCTCCCAAACGCGCCCACGTGCAGCAGCTGCAGCTGCA 180
consensus_6284#1 -----------------------------ATCGCCCCAGGGTTTAGGAATCACTAATACA 31
* *** ** ** ** * * * **
consensus_6284#0 ACTGGCAGGGCGTGGACGGACGGGCAAGAACCGATTTGTGTTTTTATCTGGACACCTTTG 240
consensus_6284#1 ATATTTATTATGTGGTCT-ATGAATGTGATCTACTATAT-------TTAAAAAAAATGAG 83
* * **** * * * ** * * * * * * * * *
consensus_6284#0 TACTACCAAACCAGCTGGATAGATTGTTAGACTGTTGTTCCAAGTTGTGTTAGTTGGTGT 300
consensus_6284#1 AAGAAAAAAAACAG--AGAAAAAGTAACAG----------CAAA--ACAAAACCTAGTAC 129
* * *** *** ** * * * ** *** * * **
consensus_6284#0 TTATTTGGCCCTTGTTAAAGTGTTTAGTGGTTAAGAGCAGCGATTCAAACAGCGATAGAG 360
consensus_6284#1 TAAA------CTTAAGTAGGTGTTTAGTGGTTAAGAGCAGCGATTCAAACAGCGATAGAG 183
* * *** * *****************************************
consensus_6284#0 CGACAAACACAGAAGAAAAAAAAACAACCGAGGAAGGTGAGAGAAAACAAATAGAACGAA 420
consensus_6284#1 CGACAAACACAGAAGAAAAAAAAACAACCGAGGAAGGTGAGAGAAAACAAATAGAACGAA 243
************************************************************
consensus_6284#0 TAACAAATCAGAAATGTTGATGGAATGAAGAAAACAAAAAAAGGATATTAAAAAAGAAAG 480
consensus_6284#1 TAACAAATCAGAAATGTTGATGGAATGAAGAAAACAAAAAAAGGATATTAAAAAAGAAAG 303
************************************************************
consensus_6284#0 TTAAGTGGTAAGAACACACACACACACAGGAGGGTCATGTTGAAGAAAGAGATAAAAAGG 540
consensus_6284#1 TTAAGTGGTAAGAACACACACACACACAGGAGGGTCATGTTGAAGAAAGAGATAAAAAGG 363
************************************************************
consensus_6284#0 CATGCGAAAAAGAGAATGGCCCCGTGTGATGCAAACAAGGGTTGCTGCGCGTTAAAGCAC 600
consensus_6284#1 CATGCGAAAAAGAGAATGGCCCCGTGTGATGCAAACAAGGGTTGCTGCGCGTTAAAGCAC 423
************************************************************
consensus_6284#0 AACACCACACCAAAACAGACAAACAATATATATTCATCACAGACAGTCCGGAGCGAGAAA 660
consensus_6284#1 AACACCACACCAAAACAGACAAACAATATATATTCATCACAGACAGTGCGGATCGAGAAA 483
*********************************************** **** *******
consensus_6284#0 CCATCAACAGCAACCTAACTACTATTAGTACTACTACTATTACTAACACTACCACTACTA 720
consensus_6284#1 CCATCAACAGCAACCTAACTACTATTAGTACTACTACTATTACTAACACTACCACTACTA 543
************************************************************
consensus_6284#0 CTACTACTACTACTACTTTGTCGTTTGTCGAGGGGAAAGAAGGGTTTTATTGCATTTCTT 780
consensus_6284#1 CTACTACTACTACTACTTTGTCGTTTGTCGAGGGGAAAGAAGGGTTTTATTGCATTTCTT 603
************************************************************
consensus_6284#0 CACCCAACCCTGTAGCTAAAAACAAAATCAGTTGGGATAACGGAAGAAACTGGTAATATG 840
consensus_6284#1 CACCCAACCCTGTAGCTAAAAACAAAATCAGTTGGGATAACGGAAGAAACTGGTAATATG 663
************************************************************
consensus_6284#0 TTGGGTGTAGCAAAGAAGGGTGCGATATGCGCACAGAGACAAACGAGAGAAAACGCAAAC 900
consensus_6284#1 TTGGGTGTAGCAAAGAAGGGTGCGATATGCGCACAGAGACAAACGAGAGAAAACGCAAAC 723
************************************************************
consensus_6284#0 GCAAGCAAAACAATAGCAAAAGAAAAGAGAGAGAAAAACACAGAAAACTATCACACTACG 960
consensus_6284#1 GCAAGCAAAACAATAGCAAAAGAAAAG--------------------------------- 750
***************************
consensus_6284#0 CGTAAACTACTAAAACAAATGTGAAGCAAAATGGAAACAAAGCAAAAAACAAACAAACAA 1020
consensus_6284#1 ------------------------------------------------------------
consensus_6284#0 ACAAACAAACATATTAAATAATCTGGTTATACGAGAAAGAGAGAGAAAGAGCGCGCGATG 1080
consensus_6284#1 ------------------------------------------------------------
consensus_6284#0 ATGCAGCTTTGCTGAATAGCATTTAATAATCTCAATAAATTCGTTCATTGTGTAACTGA 1139
consensus_6284#1 -----------------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||