cluster # 6287

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Anopheles gambiae
cluster # 6287 cluster # 6287 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6287#0 length = 692 sequences # 4

consensus_6287#1 length = 437 sequences # 1

consensusID : consensus_6287#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 692
fasta sequence

                              [CCGCCCACGCGTCCGCACCGAGTGAAGCGTCGCACAACGTTCACAACTTGCGCGTCGTGTGGTTTTGGGCGATTCCATTCGTCGGTGACACAAAACGTGCTCTGTTTGTAACTGTCTGTTGATATTAGAGTATCCTGAACACAGTAGAACAATGGCCACGATTGGAAGCCGAATCGTGCTAGTGCTGTTTTGTTTCGTGCTGGGGAATTTCGTACTGTTTCACGATCGTGAACGGATCGTTCTCGCGCAGTACATCGAAGATGAAACGTCATTACGCGGGCTCGACTTTCTTGGTGATTCGCCCAAAGGACTTTTTGGACGATGGCATTCCGAGAAGCAATATTTGAGACGCTTGCACCTCGATCGTACGGGTGAATGATGGATGACCTTGAAATGCAACCGTCTCTCTAGTGCTTCTATCAATCGAAAGCAGGTTTATCGAATACTCAGGACAATTGAAATTCGATCCCAATGGATGCCACAAAACATGTATGAGACTGAGCTGATGATTTCAGAACCAAGGCGGGATGAATTACCTTAGGACAAAGCCATCCAGGAGTGTTGCAAGTTATCAACGAAAGAAATTAAATATAATTAGTTTTAGGTTGTACTGTCGAAGTTTGTGTGTTATATGATGAAGATAAGAATATTGTTTAAAACTCATAATTGAAGTTCAATAAAAAGTAATATTT]

[+] EMBL BM646031             [CCGCCCACGCGTCCGCACCGAGTGAAGCGTCGCACAACGTTCACAACTTGCGCGTCGTGTGGTTTTGGGCGATTCCGTTCGTCGGTGACACAAAACGTGCTCTGTTTGTAACTATCTGTTGATATTAGAGCATCCTGAACACAGTAGAACAATGGCCACGATTGGAAGCCGAGTCGTGCTAGTGCTGTTTTGTTTCGTGCTGGGGAATTTCGTACTGTTTCACGATCGTGAGCGGATCGTTCTCGCGCAGTACCTCGAAGATGAAACGTCATTACGCGGGCTCGACTTTCTTGGTGATTCGCCCAAAGGACTTTTTGGACGATGGCACTCCGAGAAGCAATATTTGAGACGCTTGCATCTCGATCGTACGGGCGAATGATGGATGACCTTGAAATGCAACCGTCTCTCTAGTGCTTCTATCAATCGAAAGCAGGTTTATCGAATACTCAGGACAATTGAAATTCGATCCCAATGGATGCCACAATACATGTATGAGACTGAGCTGATGATTTCAGAACCAAGGCGGGATGAATTATCTTAGGACAAAGCCATCCAGGAGTGTTGCAAGTTATCAACGAAAGAAATTAAATATAATTAGTTTTAGGTTGTACTGTCGAAGTTTGTGTGTTATATGATGAAGATATGAATATTGTTTAAAA                                 ]
[+] EMBL BX611417             [                                       TTCACAACTTGCGCGTCGTGTGGTTTTGGGCGATTCCATTCGTCGGTGACACAAAACGTGCTCTGTTTGTAACTGTCTGTTGATATTAGAGTATCCTGAACACAGTAGAACAATGGCCACGATTGGAAGCCGAATCGTGCTAGTGCTGTTTTGTTTCGTGCTGGGGAATTTCGTACTGTTTCACGATCGTGAACGGATCGTTCTCGCGCAGTACATCGAAGATGAAACGTCATTACGCGGGCTCGACTTTCTTGGTGATTCGCCCAAAGGACTTTTTGGACGATGGCATTCCGAGAAGCAATATTTGAGACGCTTGCACCTCGATCGTACGGGTGAATGATGGATGACCTTGAAATGCAACCGTCTCTCTAGTGCTTCTATCAATCGAAAGCAGGTTTATCGAATACTCAGGACAATTGAAATTCGATCCCAATGGATGCCACAAAACATGTATGAGACTGAGCTGATGATTTCAGAACCAAGGCGGGATGAATTACCTTAGGACAAAGCCATCCAGGAGTGTTGCAAGTTATCAACGAAAGAAATTAAATATAATTAGTTTTAGGTTGTACTGTCGAAGTTTGTGTGTTATATG                                                          ]
[+] EMBL BX626186             [                                                           TGGTTTTGGGCGATTCCATTCGTCGGTGACACAAAACGTGCTCTGTTTGTAACTGTCTGTTGATATTAGAGTATCCTGAACACAGTAGAACAATGGCCACGATTGGAAGCCGAATCGTGCTAGTGCTGTTTTGTTTCGTGCTGGGGAATTTCGTACTGTTTCACGATCGTGAACGGATCGTTCTCGCGCAGTACATCGAAGATGAAACGTCATTACGCGGGCTCGACTTTCTTGGTGATTCGCCCAAAGGACTTTTTGGACGATGGCATTCCGAGAAGCAATATTTGAGACGCTTGCACCTCGATCGTACGGGTGAATGATGGATGACCTTGAAATGCAACCGTCTCTCTAGTGCTTCTATCAATCGAAAGCAGGTTTATCGAATACTCAGGACAATTGAAATTCGATCCCAATGGATGCCACAAAACATGTATGAGACTGAGCTGATGATTTCAGAACCAAGGCGGGATGAATTACCTTAGGACAAAGCCATCCAGGAGTGTTGCAAGTTATCAACGAAAGAAATTAAATATAATTAGTTTTAGGTTGTACTGTCGAAGTTTGTGTGTTATATGATGAAGATAAGAATATTGTTTAAAACTCATAATTGAAGTTCAATAAAAAGTAATATTT]
[+] EMBL BX615521             [                                                                                                                                                                                                                                                                                                                                     CATTCCGAGAAGCAATATTTGAGACGCTTGCACCTCGATCGTACGGGTGAATGATGGATGACCTTGAAATGCAACCGTCTCTCTAGGGCTTCTATCAATCGAAAGCAGGGTTATCGAATACTCAGGACAATTGAAATTCGATCCCAATGGATGCCACAAAACATGTATGAGACTGAGCTGATGATTTCAGAACCAAGGCGGGATGAATTACCTTAGGACAAAGCCATCCAGGAGGGTTGCAAGTTATCAACGAAAGAAATTAAATATAATTAGTTTTAGGGTGTACTGTCGAAGTTTGTGTGTTATATGATGAAGAAAAGAATATTGTTTAAAACTCATAATTGAAGTTCAATAAAAAG        ]




>consensus_6287#0
CCGCCCACGCGTCCGCACCGAGTGAAGCGTCGCACAACGTTCACAACTTGCGCGTCGTGT
GGTTTTGGGCGATTCCATTCGTCGGTGACACAAAACGTGCTCTGTTTGTAACTGTCTGTT
GATATTAGAGTATCCTGAACACAGTAGAACAATGGCCACGATTGGAAGCCGAATCGTGCT
AGTGCTGTTTTGTTTCGTGCTGGGGAATTTCGTACTGTTTCACGATCGTGAACGGATCGT
TCTCGCGCAGTACATCGAAGATGAAACGTCATTACGCGGGCTCGACTTTCTTGGTGATTC
GCCCAAAGGACTTTTTGGACGATGGCATTCCGAGAAGCAATATTTGAGACGCTTGCACCT
CGATCGTACGGGTGAATGATGGATGACCTTGAAATGCAACCGTCTCTCTAGTGCTTCTAT
CAATCGAAAGCAGGTTTATCGAATACTCAGGACAATTGAAATTCGATCCCAATGGATGCC
ACAAAACATGTATGAGACTGAGCTGATGATTTCAGAACCAAGGCGGGATGAATTACCTTA
GGACAAAGCCATCCAGGAGTGTTGCAAGTTATCAACGAAAGAAATTAAATATAATTAGTT
TTAGGTTGTACTGTCGAAGTTTGTGTGTTATATGATGAAGATAAGAATATTGTTTAAAAC
TCATAATTGAAGTTCAATAAAAAGTAATATTT

consensusID : consensus_6287#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 437
fasta sequence

                              [AATCCCCGAGGTNCGCGTCGTGTGGTTTTGGGCGATCCATTCGTCGGTGACACAAAACGTGCTCTGTTTGTAACTGTCTGTTGATATTAGAGTATCCTGAACACAGTAGAACAATGGCCACGATTGGAAGCCGAATCGTGCTAGTGCTGTTTTGTTTCGTGCTGGGGAATTTCGTACTGTTTCACGATCGTGAACGGATCGTTCTCGCGCAGTACATCGAAGATGAAACGTCATTACGCGGGCTCGACTTTCTTGGTGATTCGCCCAAAGGACTTTTTGGACGATGGCATTCCGAGAAGCAATATTTGAGACGCTTGCACCTCGATCGTACGGGTGAATGATGGATGACCTTGAAATGCAACCGTCTCTCTAGTGCTTCTATCAATCGAAAGCAGGTTTATCGAATACTCAGGACAATTGAAATTCGATCCCAATGG]

[+] EMBL AL932583             [AATCCCCGAGGTNCGCGTCGTGTGGTTTTGGGCGATCCATTCGTCGGTGACACAAAACGTGCTCTGTTTGTAACTGTCTGTTGATATTAGAGTATCCTGAACACAGTAGAACAATGGCCACGATTGGAAGCCGAATCGTGCTAGTGCTGTTTTGTTTCGTGCTGGGGAATTTCGTACTGTTTCACGATCGTGAACGGATCGTTCTCGCGCAGTACATCGAAGATGAAACGTCATTACGCGGGCTCGACTTTCTTGGTGATTCGCCCAAAGGACTTTTTGGACGATGGCATTCCGAGAAGCAATATTTGAGACGCTTGCACCTCGATCGTACGGGTGAATGATGGATGACCTTGAAATGCAACCGTCTCTCTAGTGCTTCTATCAATCGAAAGCAGGTTTATCGAATACTCAGGACAATTGAAATTCGATCCCAATGG]




>consensus_6287#1
AATCCCCGAGGTNCGCGTCGTGTGGTTTTGGGCGATCCATTCGTCGGTGACACAAAACGT
GCTCTGTTTGTAACTGTCTGTTGATATTAGAGTATCCTGAACACAGTAGAACAATGGCCA
CGATTGGAAGCCGAATCGTGCTAGTGCTGTTTTGTTTCGTGCTGGGGAATTTCGTACTGT
TTCACGATCGTGAACGGATCGTTCTCGCGCAGTACATCGAAGATGAAACGTCATTACGCG
GGCTCGACTTTCTTGGTGATTCGCCCAAAGGACTTTTTGGACGATGGCATTCCGAGAAGC
AATATTTGAGACGCTTGCACCTCGATCGTACGGGTGAATGATGGATGACCTTGAAATGCA
ACCGTCTCTCTAGTGCTTCTATCAATCGAAAGCAGGTTTATCGAATACTCAGGACAATTG
AAATTCGATCCCAATGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6287#0      CCGCCCACGCGTCCGCACCGAGTGAAGCGTCGCACAACGTTCACAACTTGCGCGTCGTGT 60
consensus_6287#1      -------------------------------------AATCCCCGAGGTNCGCGTCGTGT 23
                                                             * * * *  * **********

consensus_6287#0      GGTTTTGGGCGATTCCATTCGTCGGTGACACAAAACGTGCTCTGTTTGTAACTGTCTGTT 120
consensus_6287#1      GGTTTTGGGCGAT-CCATTCGTCGGTGACACAAAACGTGCTCTGTTTGTAACTGTCTGTT 82
                      ************* **********************************************

consensus_6287#0      GATATTAGAGTATCCTGAACACAGTAGAACAATGGCCACGATTGGAAGCCGAATCGTGCT 180
consensus_6287#1      GATATTAGAGTATCCTGAACACAGTAGAACAATGGCCACGATTGGAAGCCGAATCGTGCT 142
                      ************************************************************

consensus_6287#0      AGTGCTGTTTTGTTTCGTGCTGGGGAATTTCGTACTGTTTCACGATCGTGAACGGATCGT 240
consensus_6287#1      AGTGCTGTTTTGTTTCGTGCTGGGGAATTTCGTACTGTTTCACGATCGTGAACGGATCGT 202
                      ************************************************************

consensus_6287#0      TCTCGCGCAGTACATCGAAGATGAAACGTCATTACGCGGGCTCGACTTTCTTGGTGATTC 300
consensus_6287#1      TCTCGCGCAGTACATCGAAGATGAAACGTCATTACGCGGGCTCGACTTTCTTGGTGATTC 262
                      ************************************************************

consensus_6287#0      GCCCAAAGGACTTTTTGGACGATGGCATTCCGAGAAGCAATATTTGAGACGCTTGCACCT 360
consensus_6287#1      GCCCAAAGGACTTTTTGGACGATGGCATTCCGAGAAGCAATATTTGAGACGCTTGCACCT 322
                      ************************************************************

consensus_6287#0      CGATCGTACGGGTGAATGATGGATGACCTTGAAATGCAACCGTCTCTCTAGTGCTTCTAT 420
consensus_6287#1      CGATCGTACGGGTGAATGATGGATGACCTTGAAATGCAACCGTCTCTCTAGTGCTTCTAT 382
                      ************************************************************

consensus_6287#0      CAATCGAAAGCAGGTTTATCGAATACTCAGGACAATTGAAATTCGATCCCAATGGATGCC 480
consensus_6287#1      CAATCGAAAGCAGGTTTATCGAATACTCAGGACAATTGAAATTCGATCCCAATGG----- 437
                      *******************************************************     

consensus_6287#0      ACAAAACATGTATGAGACTGAGCTGATGATTTCAGAACCAAGGCGGGATGAATTACCTTA 540
consensus_6287#1      ------------------------------------------------------------
                                                                                  

consensus_6287#0      GGACAAAGCCATCCAGGAGTGTTGCAAGTTATCAACGAAAGAAATTAAATATAATTAGTT 600
consensus_6287#1      ------------------------------------------------------------
                                                                                  

consensus_6287#0      TTAGGTTGTACTGTCGAAGTTTGTGTGTTATATGATGAAGATAAGAATATTGTTTAAAAC 660
consensus_6287#1      ------------------------------------------------------------
                                                                                  

consensus_6287#0      TCATAATTGAAGTTCAATAAAAAGTAATATTT 692
consensus_6287#1      --------------------------------