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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6298#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 956 fasta sequence
[GCTCCTGCTCGGCAGCACTCTCGTCCCGCTCGCCTTCGGTGCCCTCGCCCTGCTCGCCGGTAAGGCTCTGATCGTGTCCAAGCTCGCCCTCGCCCTCGCCTCGATCATTGTTATCAAGAAGCTGATCTCGAGCGGCAGCGGACACCACGAATCGGCCCATGAGGTGGTCGTCTCCGGTGGACACGGTGGCGGCTGGGGACGTATCGGATCTGGCCAGGGTCTTGCCTACAATGGCTACGGACACTACGCCCAGTAAGCGCAGTATACCTTGATCCCCCCATCCCAGCCAACTCCCATATCCCCAAAAACCCACCAAAACAACCAGTCGCGGGCTGCTCGTTGTCAGCCGGTGCCACTGGTGGGAGT-CCGGTTAGAAACAAACGGTTAGAAGCAAGTGCAACCTGGGTCCTTCGGCATCTCGACAGCGCTCACGAACATCCTCAGCCAAATCACCCCATTAATCTCACCCTCAGTGGATCGGCGCTTGGATCGGTGTAATGCAGAAGGAACCAGCCCTGTTCCATTCGACCCGCTTTCAAACCCACTCCTCCACCCGCAACGGCCCCAGCGCAGCAAGCACCGAACTCGCACTCAATACCGACTGACGAACTGATACCCCGCCGGTAGGGCATCGTTCTATCACGCCGCGTCATATGGAATTTGCATGCAAAACGTCGTCTACAAAAACCGCGAAGCGAACATTACACACAGCCAAAAAATGGTTCCTGCTGAACCCTCACTCACACAATCATTCCCCAATCTCTCTCACACATCTCGTAATCCCCCAATAACCAGACAGGGGGCCCACCGTTCCCCGATCGGAACATATCGATGGGCACACCAGCTTTAGCTCTTAGCGGTCGAGGCGGCTCCCGTTTTTGCCGGAGCGCNGNCCACCGCACAGCAGTTTATTTATTTAACTTAATTTAATTTATTGNACTGCTCCTCAACAGAAC]
[+] EMBL BX625161 [GCTCCTGCTCGGCAGCACTCTCGTCCCGCTCGCCTTCGGTGCCCTCGCCCTGCTCGCCGGTAAGGCTCTGATCGTGTCCAAGCTCGCCCTCGCCCTCGCCTCGATCATTGTTATCAAGAAGCTGATCTCGAGCGGCAGCGGACACCACGAATCGGCCCATGAGGTGGTCGTCTCCGGTGGACACGGTGGCGGCTGGGGACGTATCGGATCTGGCCAGGGTCTTGCCTACAATGGCTACGGACACTACGCCCAGTAAGCGCAGTATACCTTGATCCCCCCATCCCAGCCAACTCCCATATCCCCAAAAACCCACCAAAACAACCAGTCGCGGGCTGCTCGTTGTCAGCCGGTGCCACTGGTGGGAGT CCGGTTAGAAACAAACGGTTAGAAGCAAGTGCAACCTGGGTCTTTCGGCATCTCGACAGAGCCCACGAACATCCTCGGCCAAATCACCCCATTAATCTCACCCTCAGTGGATCGGCGCTCGGATCGATGTAATGCAGAAGGAACCAGCCCTGTTCCATTCGACCCGCTTTCAAACCCACTCCTCCACCCGCAACGGCCCCAGCGCAGCAAGCACCGAACTCGCACTCAATACCGACTG ]
[+] EMBL BX623323 [ CGGTGGACACGGTGGCGGCTGGGGACGTATCGGATCTGGCCAGGGTCTTGCCTACAATGGCTACGGACACTACGCCCAGTAAGCGCAGTATACCTTGATCCCCCCATCCCAGCCAACTCCCATATCCCCAAAAACCCACCAAAACAACCAGTCGCGGGCTGCTCGTTGTCAGCCGGTGCCACTGGTGGGAGT CCGGTTAGAAACAAACGGTTAGAAGCAAGTGCAACCTGGGTCCTTCGGCATCTCGACAGCGCTCACGAACATCCTCAGCCAAATCACCCCATTAATCTCACCCTCAGTGGATCGGCGCTTGGATCGGTGTAATGCAGAAGGAACCAGCCCTGTTCCATTCGACCCGCTTTCAAACCCGCTCCTCCACCCGCAACGGCCCCAGCGCAGCAAGCACCGAACTCGCACTCAATACCGACTGACGAACTGATACCCCGCCGGTAGGGCATCGTTCTATCACGCCGCGTCATATGGAATTTGCATGCAAAACGTCGTCTACAAAAACCGCGAAGCGAACATTACACACAGCCAAAAAATGGTTCCTGCTGAACCCTCACTCACACAATCATTCCCCAATCTCTCTCACACATCTCGTAATCCCCCAATAACCAGACAGGGGGCCCACCGTTCCCCGATCGGAACATATCGATGGGCACACCAGCTTTAGCTCTTAGCGGTCGAGGCGGCTCCCGTTTTTGCCGGAGCGCNGNCCACCGCACAGCAGTTTATTTATTTAACTTAATTTAATTTATTGNACTGCTCCTCAACAGAAC]
[+] EMBL BX619967 [ ggnTGGGAGTCCCGGTTAGAAACAAACGGTTAGAAGCAAGTGCAACCTGGGTCCTTCGGCATCTCGACAGCGCTCACGAACATCCTCAGCCAAATCACCCCATTAATCTCACCCTCAGTGGATCGGCGCTTGGATCGGTGTAATGCAGAAGGAACCAGCCCTGTTCCATTCG ]
consensusID : consensus_6298#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 612 fasta sequence
[GGCCATAGTTGTCGTNTCCGGTGGACACGGTGGCGGCTGGGGACGTATCGGATCTGGCCAGTGGTCTTGCCTACAATGGCTACGGACACTACGCCCAGTAAGCGCAGTATACCTTGATCCCACCCATCCCAGCAAATACCCATATCCCCAAAAACCCACCAAAACAACAGTCGCGGGCTGCTCGTTGTCAGCCTGGTGCCACTGGTGGGAGTCCGGTTAGAAACAAACGGTTAGAAGCCNATTTGCANCACTGGTGTCCTTCTGGCATCTCGACAGCTGCTCACTGAACATCCTCAGCCAAATCAACCCATTAATCTCACCGCTCAGATGGATCGGCGCTTGGATCGGTGTAATGCAGAAGGAACGCAGCCCTGTTCCAGTATACGACGCCGGNTTTCAAACCNCGAGNTCCTACCAGACCGCAAACGTGGCCCAGNCGCAGACAANGCACCGAANCTACGGCACTCNAATACCGACATGACGAACTGATACCCCGCCGGTAGGGCGATCGTATCTATCACGCCGGGTCGATATGGAATANGCNATGCCAAACGTCGTCTACCANAACCGACGACAGGCGAACNTTACACCACAGGGCAACAGAAATGGTTC]
[+] EMBL AL932746 [GGCCATAGTTGTCGTNTCCGGTGGACACGGTGGCGGCTGGGGACGTATCGGATCTGGCCAGTGGTCTTGCCTACAATGGCTACGGACACTACGCCCAGTAAGCGCAGTATACCTTGATCCCACCCATCCCAGCAAATACCCATATCCCCAAAAACCCACCAAAACAACAGTCGCGGGCTGCTCGTTGTCAGCCTGGTGCCACTGGTGGGAGTCCGGTTAGAAACAAACGGTTAGAAGCCNATTTGCANCACTGGTGTCCTTCTGGCATCTCGACAGCTGCTCACTGAACATCCTCAGCCAAATCAACCCATTAATCTCACCGCTCAGATGGATCGGCGCTTGGATCGGTGTAATGCAGAAGGAACGCAGCCCTGTTCCAGTATACGACGCCGGNTTTCAAACCNCGAGNTCCTACCAGACCGCAAACGTGGCCCAGNCGCAGACAANGCACCGAANCTACGGCACTCNAATACCGACATGACGAACTGATACCCCGCCGGTAGGGCGATCGTATCTATCACGCCGGGTCGATATGGAATANGCNATGCCAAACGTCGTCTACCANAACCGACGACAGGCGAACNTTACACCACAGGGCAACAGAAATGGTTC]
consensusID : consensus_6298#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 609 fasta sequence
[CCTATGCTCAGGCAGAATTGCCAGAGGTGTNAGAAATCAAGCGCTCCATGGACTGAGGTCGCGGAGGATTGCGGTGGCTTCGGAGGTGCCGGAGGCGGTGGCTTCGGAGGCGGCAAGGACAAGGACAAGAAGAACGGCCACTGGATCATGATCCCGCTCCTGCTCGGCAGCACTCTCGTCCCGCTCGCCTTCGGTGCCCTCGCCCTGCTCGCCGGTAAGGCTCTGATCGTGTCCAAGCTCGCCCTCGCCCTCGCCTCGATCATTGGCCATCAAGAAGCTGATCTCGAGGCTGGCAGCGGACACCACGAATCGGCCCATGAGGTGGTCGTCTCCGGTGGACACGGTGGCCGTGCTGGGGACGTATCGGGATCTGGCCAGTGTCTTGCCTACAAATGGCTACGGACACTATGCCCAGTAAGCGCAGTATACCTTGATCCCCNCGCATCCCAGCAATCCCATATCCCAAAAACCAGCCAAAAAGAACCAGTACGCAGGGCTGACTCAGTTGTCAAGCCGGTGCCAACTGGTGGGAGTCCCGGTTAGAAACCAAAACGGTTAGAANGCACAGTGCAACCTGGTGTCCTTCGGCATCTCCGACAGGCGCTCACG]
[+] EMBL AL696621 [CCTATGCTCAGGCAGAATTGCCAGAGGTGTNAGAAATCAAGCGCTCCATGGACTGAGGTCGCGGAGGATTGCGGTGGCTTCGGAGGTGCCGGAGGCGGTGGCTTCGGAGGCGGCAAGGACAAGGACAAGAAGAACGGCCACTGGATCATGATCCCGCTCCTGCTCGGCAGCACTCTCGTCCCGCTCGCCTTCGGTGCCCTCGCCCTGCTCGCCGGTAAGGCTCTGATCGTGTCCAAGCTCGCCCTCGCCCTCGCCTCGATCATTGGCCATCAAGAAGCTGATCTCGAGGCTGGCAGCGGACACCACGAATCGGCCCATGAGGTGGTCGTCTCCGGTGGACACGGTGGCCGTGCTGGGGACGTATCGGGATCTGGCCAGTGTCTTGCCTACAAATGGCTACGGACACTATGCCCAGTAAGCGCAGTATACCTTGATCCCCNCGCATCCCAGCAATCCCATATCCCAAAAACCAGCCAAAAAGAACCAGTACGCAGGGCTGACTCAGTTGTCAAGCCGGTGCCAACTGGTGGGAGTCCCGGTTAGAAACCAAAACGGTTAGAANGCACAGTGCAACCTGGTGTCCTTCGGCATCTCCGACAGGCGCTCACG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6298#0 GCTCCTGCTCGGCAGCACTCTCGTCCCGCTCGCCTTCGGTGCCCTCGCCCTGCTCGCCGG 60
consensus_6298#1 ------------------------------------------------------------
consensus_6298#2 ------------------------------------------------------------
consensus_6298#0 TAAGGCTCTGATCGTGTCCAAGCTCGCCCTCGCCCTCGCCTCGATCATTGTTATCAAGAA 120
consensus_6298#1 ------------------------------------------------------------
consensus_6298#2 ------------------------------------------------------------
consensus_6298#0 GCTGATCTCGAGCGGCAGCGGACACCACGAATCGGCCCATGAGGTGGTCGTCTCCGGTGG 180
consensus_6298#1 ----------------------------------GGCCAT--AGTTGTCGTNTCCGGTGG 24
consensus_6298#2 ---------CCTATGCTCAGGCAGAATTGCCAGAGGTGTNAGAAATCAAGCGCTCCATGG 51
* * * ***
consensus_6298#0 AC-ACGGTGGCGG----CTGGGGACGTATCGGATCTGGCCAG-GGTCTTGCCTACAATGG 234
consensus_6298#1 AC-ACGGTGGCGG----CTGGGGACGTATCGGATCTGGCCAGTGGTCTTGCCTACAATGG 79
consensus_6298#2 ACTGAGGTCGCGGAGGATTGCGGTGGCTTCGGAGGTG-CCGGAGGCGGTGGCTTCGGAGG 110
** *** **** ** ** * ***** ** ** * ** ** ** * **
consensus_6298#0 CTACGGACACTACGCCCAGTA-AGCG--CAGTATACCTTGATCCC-CCCATCCCAGCCAA 290
consensus_6298#1 CTACGGACACTACGCCCAGTA-AGCG--CAGTATACCTTGATCCCACCCATCCCAGCAAA 136
consensus_6298#2 CGGCAAGGACAAGGACAAGAAGAACGGCCACTGGATCATGATCCCGCTCCTGCTCGGCAG 170
* * ** * * * ** * * ** ** * * * ******* * * * * * *
consensus_6298#0 CTCCCATATCCC---------CAAAAACC-CACCAAAACAACCAGTCGCGGGCTGCTCGT 340
consensus_6298#1 TACCCATATCCC---------CAAAAACC-CACCAAAACAAC-AGTCGCGGGCTGCTCGT 185
consensus_6298#2 CACTCTCGTCCCGCTCGCCTTCGGTGCCCTCGCCCTGCTCGCCGGTAAGGCTCTGATCGT 230
* * **** * ** * ** * ** * *** ****
consensus_6298#0 TGTCAGCC-GGTGCCACTGGTGGGAGTCCGGTTAGAAACAAACGGTTAGAAGCAAGT--G 397
consensus_6298#1 TGTCAGCCTGGTGCCACTGGTGGGAGTCCGGTTAGAAACAAACGGTTAGAAGCCNATTTG 245
consensus_6298#2 GTCCAAGC--TCGCCCTCGCCCTCGCCTCGATCATTGGCCATCA---AGAAGCTGATC-T 284
** * *** * ** * * * * * ****** *
consensus_6298#0 CAAC-CTGG-GTCCTTC-GGCATCTCGACAGC-GCTCAC-GAACATCCTCAGCCAAATCA 452
consensus_6298#1 CANCACTGGTGTCCTTCTGGCATCTCGACAGCTGCTCACTGAACATCCTCAGCCAAATCA 305
consensus_6298#2 CGAGGCTGG----CAGCGGACACCACGA-ATCGGCCCATGAGGTGGTCGTCTCCGG-TGG 338
* **** * * * ** * *** * * ** ** * ** *
consensus_6298#0 CCCCATTAATCTCACC-CTCAG-TGGATCGGCGCTTGGATCGGTGTAATGCA---GAAGG 507
consensus_6298#1 ACCCATTAATCTCACCGCTCAGATGGATCGGCGCTTGGATCGGTGTAATGCA---GAAGG 362
consensus_6298#2 ACACGGTGGCCGTGCT--GGGGACGTATCGGGATCTGG-CCAGTGTCTTGCCTACAAATG 395
* * * * * * * ***** *** * **** *** ** *
consensus_6298#0 AAC-CAGCC-CTGT-TCCATT---CGACCC--GCTTTCAAACCC---ACTCCTCC--ACC 554
consensus_6298#1 AACGCAGCC-CTGT-TCCAGTATACGACGCCGGNTTTCAAACCNCGAGNTCCTACCAGAC 420
consensus_6298#2 GCTACGGACACTATGCCCAGTAAGCGCAGTATACCTTGATCCCCNCGCATCCCAGC-AAT 454
* * * ** * *** * ** ** * ** ***
consensus_6298#0 CGCAA---CGGCCCCAGCGCAGC--AAGCACCGAACTC---GCACTCAA-T-ACCGAC-T 603
consensus_6298#1 CGCAAACGTGGCCCAGNCGCAGACAANGCACCGAANCTACGGCACTCNAAT-ACCGACAT 479
consensus_6298#2 CCCA----TATCCCAAAAACCAGCCAAAAA--GAACCAGT-ACGCAGGGCTGACTCAGTT 507
* ** *** * * * *** * * * ** * *
consensus_6298#0 GACGAACTGATACCCCGCCGGTAGGGC-ATCGT-TCTATCACGCCGCGTC-ATATGGAAT 660
consensus_6298#1 GACGAACTGATACCCCGCCGGTAGGGCGATCGTATCTATCACGCCGGGTCGATATGGAAT 539
consensus_6298#2 GTCAAGCCGGTGCCA-ACTGGTGGGA--GTCCCGGTTAGAA-ACCAAAACGGT-TAGAAN 562
* * * * * * ** * *** ** ** ** * ** * * * ***
consensus_6298#0 TTGCA-TGCAAAACGTCGTCTACAAAAACCG-CGA--AGCGAACATTACAC-ACAGCCAA 715
consensus_6298#1 ANGCNATGCCAAACGTCGTCTACCANAACCGACGACAGGCGAACNTTACACCACAGGGCA 599
consensus_6298#2 GCACAGTGCAACCTGGTGTCCTTCGGCATCTCCGACAGGCGCTCACG------------- 609
* *** * * *** * * *** *** *
consensus_6298#0 A---AAATGGTTCCTGCTGAACCCTCACTCACACAATCATTCCCCAATCTCTCTCACACA 772
consensus_6298#1 ACAGAAATGGTTC----------------------------------------------- 612
consensus_6298#2 ------------------------------------------------------------
consensus_6298#0 TCTCGTAATCCCCCAATAACCAGACAGGGGGCCCACCGTTCCCCGATCGGAACATATCGA 832
consensus_6298#1 ------------------------------------------------------------
consensus_6298#2 ------------------------------------------------------------
consensus_6298#0 TGGGCACACCAGCTTTAGCTCTTAGCGGTCGAGGCGGCTCCCGTTTTTGCCGGAGCGCNG 892
consensus_6298#1 ------------------------------------------------------------
consensus_6298#2 ------------------------------------------------------------
consensus_6298#0 NCCACCGCACAGCAGTTTATTTATTTAACTTAATTTAATTTATTGNACTGCTCCTCAACA 952
consensus_6298#1 ------------------------------------------------------------
consensus_6298#2 ------------------------------------------------------------
consensus_6298#0 GAAC 956
consensus_6298#1 ----
consensus_6298#2 ----
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||