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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6306#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1384 fasta sequence
[TAGTCTATTTCATTTCGATTGAGCAGTTTTTTTTTTCATGTTGTATAGCATTTACAAGATAGAATGCAGTTAGGCGTAATACTATGGAGGAAGGAACAAAGCCTTAACATAAGTTGTACTTTTATTTTAAAATAAAATCTTAATCGCTCTTAATCAATCAATGATTGACGATGTGTTAATGCACATCGGTNTATGTTTTTTTAACTTTCACGTTGTGCTCCTATTATGTGTGTGTGTGTGTGCAAGTAAACAGAAAGATCTCAATACAAAAAAATTACTAGTATATCCCGTTCCGAGCCGATACATTGAGCGATAAATTCTAGTCACGATAAAACAATGAAAAGAAACAAAAACACAAACATTAAGATTACAAATTAAACGAACAAACTAAAACATACGGTGATGGGATGGTTTTTAAGCATAATGATACGTTCATAGTTGAAAGTCAATTGCGTTAGTGAATTTTAATGCGCCTCAATGTTAAAGCCCTACCCCATTTGCTTCGTATTTGTTCGGTTGAAGTAAGAG-AAAAAAATAAGCATACCTTACATATTGTGTGCCCTTCACGAAACATTACAAAACGCACTTATCCAGACAAATCTTCGTACTAAAAAATGTTCAATGATTTCTCCTCGAAGTGAAGAAATTGAACTGGACTGCGAATAAAAACATGAAACTAAATGGGAATTAATGGTAAAACGTGAAAAATTAAACATGAAATTAAATAATGCTGATACAAATGCACGAAATCTGTAAATTACGCTCGTAATCTGTGTCGAACTTGGATGGAACAGTACT-GGAAGTAAAATATGTTTGCAAAACGGTCCTTAGGACTAGCGTAGG-TTCCCCGCACCCCCATATAGCAATAATACAGTGCTGTAAGGCTCAAAAGTAGTTTACGCGGTAAAGCTTAACAAATAGCGTTCGATAACAAAAGCATACCCGAACAAGGAATGTAAAGATAAAAAAAAAAACGTTACAGAACAGCAAGGACAATAATAACATAAACTGCTGGACGAATCTGTCGTAGAATGTGAAGAACGCAACAAACTAAAAGGAC-AAAAACAACAAAAGTTAAATAATATTTCCACAACATAACACGAACCTGTTATATGCTTAAGAAAAGTGAAGCTGAATAATTTGATTCCGG------AT----A-AT-TGTAGGCGTTTAAAATGTTAACAAAACAGAATAACACAAAAAAACAGTTGTGTCCGGCATTGTTCGCTTTGGTTTGAAACGGTACTTGGCACGAGACGCGTTCAAACAAATCAAACCTTAAGAGCTGATTACAATCGCCGGAAGTGTTGCGGTGGCCAGTGGTAGATCCACGCAGCAAATAGCAATAGAAACGAGCATGATAACAACCACAATAATATTTAATTGAAAT]
[+] EMBL BX625777 [TAGTCTATTTCATTTCGATTGAGCAGTTTTTTTTTTCATGTTGTATAGCATTTACAAGATAGAATGCAGTTAGGCGTAATACTATGGAGGAAGGAACAAAGCCTTAACATAAGTTGTACTTTTATTTTAAAATAAAATCTTAATCGCTCTTAATCAATCAATGATTGACGATGTGTTAATGCACATCGGTNTATGTTTTTTTAACTTTCACGTTGTGCTCCTATTATGTGTGTGTGTGTGTGCAAGTAAACAGAAAGATCTCAATACAAAAAAATTACTAGTATATCCCGTTCCGAGCCGATACATTGAGCGATAAATTCTAGTCACGATAAAACAATGAAAAGAAACAAAAACACAAACATTAAGATTACAAATTAAACGAACAAACTAAAACATACGGTGATGGGATGGTTTTTAAGCATAATGATACGTTCATAGTTGAAAGTCAATTGCGTTAGTGAATTTTAATGCGCCTCAATGTTAAAGCCCTACCCCATTTGCTTCGTATTTGTTCGGTTGAAGTAAGAG AAAAAAATAAGCATACCTTACATATTGTGTGCCCTTCACGAAACATTACAAAACGCACTTATCCAGACAAATCTTCGTACTAAAAAATGTTCAATGATTTCTCCTCGAAGTGAAGAAATTGAACTGGACTGCGAATAAAAACATGAAACTAAATGGGAATTAATGGTAAAACGTGAAAAATTAAACATGAAATTAAATAATGCTGATACAAATGCACGAAATCTGTAAATTACGCTCGTAATCTGTGTCGAACTTGGATGGAACAGTACTGGGAAGT AAATATGTTTGCAAAACGGTCCTTANGACTAGCGTAGG TTCCCCGCACCCCCATA ]
[+] EMBL BX618616 [ CATTGAGCGATAAATTCTAGTCACGATAAAACAATGAAAAGAAACAAAAACACAAACATTAAGATTACAAATTAAACGAACAAACTAAAACATACGGTGATGGGATGGTTTTTAAGCATAATGATACGTTCATAGTTGAAAGTCAATTGCGTTAGTGAATTTTAATGCGCCTCAATGTTAAAGCCCTACCCCATTTGCTTCGTATTTGTTCGGTTGAAGTAAGAGAAAAAAAATAAGCATACCTTACATATTGTGTGCCCTTCACGAAACATTACAAAACGCACTTATCCAGACAAATCTTCGTACTAAAAAATGTTCAATGATTTCTCCTCGAAGTGAAGAAATTGAACTGGACTGCGAATAAAAACATGAAACTAAATGGGAATTAATGGTAAAACGTGAAAAATTAAACATGAAATTAAATAATGCTGATACAAATGCACGAAATCTGTAAATTACGCTCGTAATCTGTGTCGAACTTGGATGGAACAGTACT GGAAGTAAAATATGTTTGCAAAACGGTCCTTAGGACTAGCGTAGG T ]
[+] EMBL BM641064 [ ccgATTAAACATGAAATTAAATAATGCTAGTACAAATGTACGAAATCTGTAAATTACGCTCGTTATCTGTGTCGAACTTGGATGGAACAGTACT GGAAGTAAAATATGTATGCAAAACGGTCCTTAGGACAAGCGTAGGTTTCCCCGCACCCCCATATAGCAATAATACAGTGCTGTAAGGCTCAAAAGTAGTTTACGCGGTAAAGCTTAACAAATAGCGTTCGATAACAAAAGCATACCCGAACAAGGAATGTAAAGATAAAAAAAAAAACGTTACAGAACAGCAAGGACAATAATAACATAAACTGCTGGACGAATCTGTCGTAGAATGTGAAGAACGCAACAAACTAAAAGGAC AAAAACAACAAAAGTTAAATAATATTTCCACAACATAACACGAACCTGTTATATGCTTAAGAAAAGTGAAGCTGAATAATTTGATTCCGG AT A AT TGTAGGCGTTTAAAATGTTAACAAAACAGAATAACACAAAAAAACAGTTGTGTCCGGCATTGTTCGCTTTGGTTTGAAACGGTACTTGGCACGAGACGCGTTCAAACAAATCAAACCTTAAGAGCTGATTACAATCGCCGGAAGTGTTGCGGTGGCCAGTGGTAGATCCACGCAGCAAATAGCAATAGAAACGAGCATGATAACAA ]
[+] EMBL BX612916 [ TAGCGTTCGATAACAAAAGCATACCAGAACAAGGAATGTAAAG AGAAAAAAAAACGTTACAGAACAGCAAGGACAATAATAACATAAACTGCTGGACGAATCTGTCGTAGAATGTGAAGAACTTAACAAACTAAAAGGACAAAAAACAACAAAAGTTGAATAATATTTCCACAACATAACACGAACCTGTTATATGCTTAAGAAAAGTGAAGCCGAATAATTCGATTTCGGTCGATCATTCTGATATCTGTAGGCGTTTAAAATGTTAACAAAACAGAACAA AC AAAAAACAGTTGTGTCCGGCATTGTTCGCTTTGGTTTGAAACGGTACTTGGCACGAGACGCGTTCAAACAAATCAAACCTTAAGAGCTGATTACACTCGCCGGAAGTGTTGCGGTGGCCAGTGGTAGATCCACGCAGCAAATAGCAATAGAAACGAGCATGATAACAACCACAATAATATTTAATTGAAAT]
consensusID : consensus_6306#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 387 fasta sequence
[TCGGCCAGANTAACAGAAGATCTCATACAAAAAAATTACTAGTATATCCCGTTCCGAGCCGATACATTGAGCGATAAATTCTAGTCACGATAAAACAATGAAAAGAAACAAAAACACAAACATTAAGATTACAAATTAAACGAACAAACTAAAACATACGGTGATGGGATGGTTTTTAAGCATAATGATACGTTCATAGTTGAAAGTCAATTGCGTTAGTGAATTTTAATGCGCCTCAATGTTAAAGCCCTACCCCATTTGCTTCGTATTTGTTCGGTTGAAGTAAGAGAAAAAAAATAAGCATACCTTACATATTGTGTGCCCTTCACGAAACATTACAAAACGCACTTATCCAGACAAATCTTCGTACTAAAAAATGTTCAATGA]
[+] EMBL AL932454 [TCGGCCAGANTAACAGAAGATCTCATACAAAAAAATTACTAGTATATCCCGTTCCGAGCCGATACATTGAGCGATAAATTCTAGTCACGATAAAACAATGAAAAGAAACAAAAACACAAACATTAAGATTACAAATTAAACGAACAAACTAAAACATACGGTGATGGGATGGTTTTTAAGCATAATGATACGTTCATAGTTGAAAGTCAATTGCGTTAGTGAATTTTAATGCGCCTCAATGTTAAAGCCCTACCCCATTTGCTTCGTATTTGTTCGGTTGAAGTAAGAGAAAAAAAATAAGCATACCTTACATATTGTGTGCCCTTCACGAAACATTACAAAACGCACTTATCCAGACAAATCTTCGTACTAAAAAATGTTCAATGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6306#0 TAGTCTATTTCATTTCGATTGAGCAGTTTTTTTTTTCATGTTGTATAGCATTTACAAGAT 60
consensus_6306#1 ------------------------------------------------------------
consensus_6306#0 AGAATGCAGTTAGGCGTAATACTATGGAGGAAGGAACAAAGCCTTAACATAAGTTGTACT 120
consensus_6306#1 ------------------------------------------------------------
consensus_6306#0 TTTATTTTAAAATAAAATCTTAATCGCTCTTAATCAATCAATGATTGACGATGTGTTAAT 180
consensus_6306#1 ------------------------------------------------------------
consensus_6306#0 GCACATCGGTNTATGTTTTTTTAACTTTCACGTTGTGCTCCTATTATGTGTGTGTGTGTG 240
consensus_6306#1 ---------------------------------------------------------TCG 3
*
consensus_6306#0 TGCAAGTAAACAGAAAGATCTCAATACAAAAAAATTACTAGTATATCCCGTTCCGAGCCG 300
consensus_6306#1 GCCAGANTAACAGAA-GATCTCA-TACAAAAAAATTACTAGTATATCCCGTTCCGAGCCG 61
** ******* ******* ************************************
consensus_6306#0 ATACATTGAGCGATAAATTCTAGTCACGATAAAACAATGAAAAGAAACAAAAACACAAAC 360
consensus_6306#1 ATACATTGAGCGATAAATTCTAGTCACGATAAAACAATGAAAAGAAACAAAAACACAAAC 121
************************************************************
consensus_6306#0 ATTAAGATTACAAATTAAACGAACAAACTAAAACATACGGTGATGGGATGGTTTTTAAGC 420
consensus_6306#1 ATTAAGATTACAAATTAAACGAACAAACTAAAACATACGGTGATGGGATGGTTTTTAAGC 181
************************************************************
consensus_6306#0 ATAATGATACGTTCATAGTTGAAAGTCAATTGCGTTAGTGAATTTTAATGCGCCTCAATG 480
consensus_6306#1 ATAATGATACGTTCATAGTTGAAAGTCAATTGCGTTAGTGAATTTTAATGCGCCTCAATG 241
************************************************************
consensus_6306#0 TTAAAGCCCTACCCCATTTGCTTCGTATTTGTTCGGTTGAAGTAAGAGAAAAAAA-TAAG 539
consensus_6306#1 TTAAAGCCCTACCCCATTTGCTTCGTATTTGTTCGGTTGAAGTAAGAGAAAAAAAATAAG 301
******************************************************* ****
consensus_6306#0 CATACCTTACATATTGTGTGCCCTTCACGAAACATTACAAAACGCACTTATCCAGACAAA 599
consensus_6306#1 CATACCTTACATATTGTGTGCCCTTCACGAAACATTACAAAACGCACTTATCCAGACAAA 361
************************************************************
consensus_6306#0 TCTTCGTACTAAAAAATGTTCAATGATTTCTCCTCGAAGTGAAGAAATTGAACTGGACTG 659
consensus_6306#1 TCTTCGTACTAAAAAATGTTCAATGA---------------------------------- 387
**************************
consensus_6306#0 CGAATAAAAACATGAAACTAAATGGGAATTAATGGTAAAACGTGAAAAATTAAACATGAA 719
consensus_6306#1 ------------------------------------------------------------
consensus_6306#0 ATTAAATAATGCTGATACAAATGCACGAAATCTGTAAATTACGCTCGTAATCTGTGTCGA 779
consensus_6306#1 ------------------------------------------------------------
consensus_6306#0 ACTTGGATGGAACAGTACTGGAAGTAAAATATGTTTGCAAAACGGTCCTTAGGACTAGCG 839
consensus_6306#1 ------------------------------------------------------------
consensus_6306#0 TAGGTTCCCCGCACCCCCATATAGCAATAATACAGTGCTGTAAGGCTCAAAAGTAGTTTA 899
consensus_6306#1 ------------------------------------------------------------
consensus_6306#0 CGCGGTAAAGCTTAACAAATAGCGTTCGATAACAAAAGCATACCCGAACAAGGAATGTAA 959
consensus_6306#1 ------------------------------------------------------------
consensus_6306#0 AGATAAAAAAAAAAACGTTACAGAACAGCAAGGACAATAATAACATAAACTGCTGGACGA 1019
consensus_6306#1 ------------------------------------------------------------
consensus_6306#0 ATCTGTCGTAGAATGTGAAGAACGCAACAAACTAAAAGGACAAAAACAACAAAAGTTAAA 1079
consensus_6306#1 ------------------------------------------------------------
consensus_6306#0 TAATATTTCCACAACATAACACGAACCTGTTATATGCTTAAGAAAAGTGAAGCTGAATAA 1139
consensus_6306#1 ------------------------------------------------------------
consensus_6306#0 TTTGATTCCGGATAATTGTAGGCGTTTAAAATGTTAACAAAACAGAATAACACAAAAAAA 1199
consensus_6306#1 ------------------------------------------------------------
consensus_6306#0 CAGTTGTGTCCGGCATTGTTCGCTTTGGTTTGAAACGGTACTTGGCACGAGACGCGTTCA 1259
consensus_6306#1 ------------------------------------------------------------
consensus_6306#0 AACAAATCAAACCTTAAGAGCTGATTACAATCGCCGGAAGTGTTGCGGTGGCCAGTGGTA 1319
consensus_6306#1 ------------------------------------------------------------
consensus_6306#0 GATCCACGCAGCAAATAGCAATAGAAACGAGCATGATAACAACCACAATAATATTTAATT 1379
consensus_6306#1 ------------------------------------------------------------
consensus_6306#0 GAAAT 1384
consensus_6306#1 -----
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||