|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6308#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1732 fasta sequence
[CCGTATTTTTGTCCATACATTTTGGAAAAATGTAATCTTAATAAGTGTGTGTGTGTGAGAGAGAGGTAAAACATAGAGGGAAACAGTATAGCGAAGAGCACACCAAAACGATCGGTTCGTTAAACCCACAATCAAAAGCTCCATCGGGAGTGAAGCTCTCTCTTCCGCTCGCATCTTCCACCACGACGATATACCTATGTGTCAAAGGGTTTTGCATTTATTTCACATGCTCTCTGTCTCTGTTTTCTCTGCATCGAGCGTGGAGACAACGGATCTGTATGTTACCATTTCTTTTTTTTTATTTAAACACGAAACGGAAGAAAAAATCGCATACAACGCGTCGGGAGAGGATCCTCCTTGAAAGTGATAATGGCTAAAAATGCCTGCGTGATGGAACTATAGGAGTGAAGGCGGAGAAGGCGGGCGAGTAAAGAGAAAGTATTTTTGAAACCATATTCCACATTACTATTTATCCGGTACAATTTTTTTTTTGCCCATCCTACCCAAACAGTTGGGAGAGAGGGAACGCGTGTGAACTGTGACCGAAGATGCAATGTATTTTTGTTTAGTTTATTGTCGATTTTTGTTTTTTTATTTTTTATTTTTTATGTTAAGATATGTTTTCTTTGATTGCTTCGTAACTCGTGGAGGTGCTTTTGTGCTTCAAACCAAATCTCATTTTTGCAGTATTTTTTAGTTTATTGAGTTGCAGCTACCAGTTTTGTTTTATATTTTTGGTTTAAATTTTGGTTTTTTGGGCTTTACGGCTGGTTCTAGTTGTTGTACATCAGGACAGGACTTGAGAACAAACGCTCCCGCTCTCGCTCTCTTTCTCTCTCTATCACACACTTTTGTGTGTATTGTGAACGATTTAGTATTTTGTTTTTCAGTGTATGAGATTTTTCGGTAACAATTTGGTTAATTTTGTTTGCGCTGATATGCGATCCACACATGCGAACCTGGGTGTAGTGGCACAGACAAGAGCGGGAAGGAAAAAGCCGTAAACATACAGAGCGTGTTATAAAAACAGCAGAGGATGAAGAAAAACGCGCGCAGAAGAATTTCAGCAGGTCAATTTCTCCGCTAGGCACCGTGCAAAACCAGTTACGCCTATGATTTCCCCTCAATTAAACAACTCCTGTGTGAAAGCGGAAGGAGCGTGCAAGACACACACACACGCACACCGCGATGGAATGTTTCTTTCTTGTACATGCGTTTATATTTCGGTCCCCAGTAAAAAAAAACTCCAACCAACAACCAACAGCACACCCCCAACGTACCCGAGGATCGTTCTTGTTTCACTTG-TTTTTTTTTTTCGTTTTCCCCATTGTGCGAAATTAAGTACTGCGAAAAGAAGAAGGGCGCCTTAATGTTTAGGCAAATAGCAAAGGAGTAGGCTGAAAAGCAACCCCCCGCGCGAGGGACAACGGTTCGCATTTTCATCGGAAAAAAGGAAGCGAAAAGCACACGCAAATCCCTGGCCCTTGAAACGAAGTGTATCTGTGTTTTTTAAACGCTGAGATTGAAGAACAAGAGAAAAAAAAACACGAGAAAGACTAATAATGAGACGATGAGACGAGAAAATCAATCCTATTTCAGAGAGAAGGAGGAGAAGGGGGTGTGTATGAATTTTTACCGCTACCGCTAACGCAACTATCAACTACTACATCTACTATGAAGAAATAAATATTCTATAAAATATACAAAACGTGAGCAAACACAACCACAAGCA]
[+] EMBL BM650373 [CCGTATTTTTGTCCATACATTTTGGAAAAATGTAATCTTAATAAGTGTGTGTGTGTGAGAGAGAGGTAAAACATAGAGGGAAACAGTATAGCGAAGAGCACACCAAAACGATCGGTTCGTTAAACCCACAATCAAAAGCTCCATCGGGAGTGAAGCTCTCTCTTCCGCTCGCATCTTCCACCACGACGATATACCTATGTGTCAAAGGGTTTTGCATTTATTTCACATGCTCTCTGTCTCTGTTTTCTCTGCATCGAGCGTGGAGACAACGGATCTGTATGTTACCATTTCTTTTTTTTTATTTAAACACGAAACGGAAGAAAAAATCGCATACAACGCGTCGGGAGAGGATCCTCCTTGAAAGTGATAATGGCTAAAAATGCCTGCGTGATGGAACTATAGGAGTGAAGGCGGAGAAGGCGGGCGAGTAAAGAGAAAGTATTTTTGAAACCATATTCCACATTACTATTTATCCGGTACAATTTTTTTTTTGCCCATCCTACCCAAACAGTTGGGAGAGAGGGAACGCGTGTGAACTGTGACCGAAGATGCAATGTATTTTTGTTTAGTTTATTGTCGATTTTTGTTTTTTTATTTTTTATTTTTTATGTTAAGATATGTTTTCTTTGATTGCTTCGTAACTCGTGGAGGTGCTTTTGTGCTTCAAACCAAAT ]
[+] EMBL BX625806 [ CTTCGTAACTCGTGGAGGTGCTTTTGTGCTTCAAACCAAATCTCATTTTTGCAGTATTTTTTAGTTTATTGAGTTGCAGCTACCAGTTTTGTTTTATATTTTTGGTTTAAATTTTGGTTTTTTGGGCTTTACGGCTGGTTCTAGTTGTTGTACATCAGGACAGGACTTGAGAACAAACGCTCCCGCTCTCGCTCTCTTTCTCTCTCTATCACACACTTTTGTGTGTATTGTGAACGATTTAGTATTTTGTTTTTCAGTGTATGAGATTTTTCGGTAACAATTTGGTTAATTTTGTTTGCGCTGATATGCGATCCACACATGCGAACCTGGGTGTAGTGGCACAGACAAGAGCGGGAAGGAAAAAGCCGTAAACATACAGAGCGTGTTATAAAAACAGCAGAGGATGAAGAAAAACGCGCGCAGAAGAATTTCAGCAGGTCAATTTCTCCGCTAGGCACCGTGCAAAACCAGTTACGCCTATGATTTCCCCTCAATTAAACAACTCCTGTGTGAAAGCGGAAGGAGCGTGCAAGACACACACACACGCACACCGCGATGGAATGTTTCTTTCTTGTACATGCGTTTATATTTCGGTCCCCAGTAAAAAAAAACTCCAACCAACAACCAACAGCACACCCCCAACGTACCCGAGGATCGTTCTTGTTTCACTTG TTTTTTTTTTTCGTTTTCCCCATTGTGCGAAATTAAGTACTGCGAAAAGAAGAAGGGCGCCTTAATGTTTAGGCAAATAGCAAAGGAGTAGGCTGAAAAGCAACCCCC ]
[+] EMBL BX617267 [ GTAAAAAAAAACTCCAACCAACAACCAACAGCACACCCCCAACGTACCCGAGGATCGTTCTTGTTTCACTTGTTTTTTTTTTTTCGTTTTCCCCATTGTGCGAAATTAAGTACTGCGAAAAGAAGAAGGGCGCCTTAATGTTTAGGCAAATAGCAAAGGAGTAGGCTGAAAAGCAACCCCCCGCGCGAGGGACAACGGTTCGCATTTTCATCGGAAAAAAGGAAGCGAAAAGCACACGCAAATCCCTGGCCCTTGAAACGAAGTGTATCTGTGTTTTTTAAACGCTGAGATTGAAGAACAAGAGAAAAAAAAACACGAGAAAGACTAATAATGAGACGATGAGACGAGAAAATCAATCCTATTTCAGAGAGAAGGAGGAGAAGGGGGTGTGTATGAATTTTTACCGCTACCGCTAACGCAACTATCAACTACTACATCTACTATGAAGAAATAAATATTCTATAAAATATACAAAACGTGAGCAAACACAACCACAAGCA]
consensusID : consensus_6308#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 385 fasta sequence
[AGAATCGCCCGAGGGTTTTCTCTGCATCGAGCGTGGAGACAGCGGATCTGTATGTTACCATTTCTTTTTTTTTTTTAAACACGAAACGGAAGAAAAAATCGCATACAACGCGTCGGGAGAGGATCCTCCTTGAAAGTGATAATGGCTAAAAATGCCTGCGTGATGGAACTATATGGAGTGAAGGCGGAGAGGGCGGGCGAGAAAGGAGAAAGTATTTTTGAAACCATTTTCCACATCACTATTTATCCGGTACAATTTTTTTTTTTGCCCATCCTACCCAAACAGTTGGGAGAGAGGGAACGCGTGTGAACTGTGACCGAAGATGCAATGTATTTTTGTTTAGTTTATTGTCGATTTTTGTCTTTATTTTTTTATTTTTTATGTT]
[+] EMBL AL932429 [AGAATCGCCCGAGGGTTTTCTCTGCATCGAGCGTGGAGACAGCGGATCTGTATGTTACCATTTCTTTTTTTTTTTTAAACACGAAACGGAAGAAAAAATCGCATACAACGCGTCGGGAGAGGATCCTCCTTGAAAGTGATAATGGCTAAAAATGCCTGCGTGATGGAACTATATGGAGTGAAGGCGGAGAGGGCGGGCGAGAAAGGAGAAAGTATTTTTGAAACCATTTTCCACATCACTATTTATCCGGTACAATTTTTTTTTTTGCCCATCCTACCCAAACAGTTGGGAGAGAGGGAACGCGTGTGAACTGTGACCGAAGATGCAATGTATTTTTGTTTAGTTTATTGTCGATTTTTGTCTTTATTTTTTTATTTTTTATGTT]
consensusID : consensus_6308#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 308 fasta sequence
[GGCCAGAATCGCCACGAGGGTACGAAGAGCACACCACAACGATCGGTTCGTCAAACCCACAATCAAAAGCTCCATCGGGAGTGAAGCTCTCTCTTCCGCTCGCATCTTCCATCACGACGATATACCTATGTGTCAAAGGGTTTTGCATTTATTTCACATGCGTCTCTGGTCTCTGGTGTTCTCTGCATCGAGCGTGGAAACAGCGGATCTGTATGTTACCATTNCTTTTGGTGGATTGAAAGCACGAAACGGAAGAAAATCGCATACAACGCGTCGGGAGAGGATCCTCCTTGAAAGTGATAATGGNG]
[+] EMBL BX469204 [GGCCAGAATCGCCACGAGGGTACGAAGAGCACACCACAACGATCGGTTCGTCAAACCCACAATCAAAAGCTCCATCGGGAGTGAAGCTCTCTCTTCCGCTCGCATCTTCCATCACGACGATATACCTATGTGTCAAAGGGTTTTGCATTTATTTCACATGCGTCTCTGGTCTCTGGTGTTCTCTGCATCGAGCGTGGAAACAGCGGATCTGTATGTTACCATTNCTTTTGGTGGATTGAAAGCACGAAACGGAAGAAAATCGCATACAACGCGTCGGGAGAGGATCCTCCTTGAAAGTGATAATGGNG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6308#0 CCGTATTTTTGTCCATACATTTTGGAAAAATGTAATCTTAATAAGTGTGTGTGTGTGAGA 60
consensus_6308#1 ------------------------------------------------------------
consensus_6308#2 ------------------------------------------------------------
consensus_6308#0 GAGAGGTAAAACATAGAGGGAAACAGTATAGCGAAGAGCACACCAAAACGATCGGTTCGT 120
consensus_6308#1 ------------------------------------------------------------
consensus_6308#2 ------------------------------------------------------------
consensus_6308#0 TAAACCCACAATCAAAAGCTCCATCGGGAGTGAAGCTCTCTCTTCCGCTCGCATCTTCCA 180
consensus_6308#1 ------------------------------------------------------------
consensus_6308#2 ------------------------------------------------------------
consensus_6308#0 CCACGACGATATACCTATGTGTCAAAGGGTTTTGCATTTATTTCACATGCTCTCTGTCTC 240
consensus_6308#1 ----------------------------------------------AGAATCGCC-CGAG 13
consensus_6308#2 ------------------------------------------------------------
consensus_6308#0 TGTTTTCTCTGCATCGAGCGTGGAGACAACGGATCTGTATGTTACCATTTCTTTTTTTTT 300
consensus_6308#1 GGTTTTCTCTGCATCGAGCGTGGAGACAGCGGATCTGTATGTTACCATTTCTTTTTTTTT 73
consensus_6308#2 GGCCAGAATCGCCACGAGGGTACGAAGAGCACACCACAACG--ATCGGTTCGTC------ 52
* ** **** ** * * * * * * * * * *** *
consensus_6308#0 ATTTAAACACGAAACGGAAGAAAAAATCGCATACAACGCGTCGGGAGAGGATCCTCCTTG 360
consensus_6308#1 -TTTAAACACGAAACGGAAGAAAAAATCGCATACAACGCGTCGGGAGAGGATCCTCCTTG 132
consensus_6308#2 ----AAACCCACAATCAAAAGCTCCATCGGGAGTGAAGCTCTCTC------TTCCGCTCG 102
**** * ** ** **** * ** * * ** *
consensus_6308#0 AAAGTGATAATGGCTAAAAATGCCTGCGTGATGGAACTATA-GGAGTGAAGGCGGAGAAG 419
consensus_6308#1 AAAGTGATAATGGCTAAAAATGCCTGCGTGATGGAACTATATGGAGTGAAGGCGGAGAGG 192
consensus_6308#2 CATCTTCCATCACGACGATATACCTATGTGTCAAAGGGTTTTGCATTTATTTCACATGCG 162
* * * * ** *** *** * * * * * * * * *
consensus_6308#0 GCGGGCGAGTAAAGAGAAAGTATTTTTGAAACCATATTCCACATTACT-ATTTATCCGGT 478
consensus_6308#1 GCGGGCGAGAAAGGAGAAAGTATTTTTGAAACCATTTTCCACATCACT-ATTTATCCGGT 251
consensus_6308#2 TCTCTGGTCTCTGGTGT-----TCTCTGCATCGAGCGTGGAAACAGCGGATCTGTATGTT 217
* * * * * * ** * * * * * * * ** * * * *
consensus_6308#0 ACAATTTTTTTTTT-GCCCATCCTACCCAAACAGTTGGGAGAGAGGGAACGCGTGTGAAC 537
consensus_6308#1 ACAATTTTTTTTTTTGCCCATCCTACCCAAACAGTTGGGAGAGAGGGAACGCGTGTGAAC 311
consensus_6308#2 ACCATTNCTTTTGGTG--------GATTGAAAGCACGAAACGGAAGAAAATCGCATACAA 269
** *** **** * ** * * ** * ** ** * *
consensus_6308#0 TGTGACCGAAGATGCAATGTATTTTTGTTTAGTTTATTGTCGATTTTTGTTTTTTTATTT 597
consensus_6308#1 TGTGACCGAAGATGCAATGTATTTTTGTTTAGTTTATTGTCGATTTTTGTCTTTAT-TTT 370
consensus_6308#2 CGCGTCGGGAGAGG------ATCCTCCTTGAAAGTGATAATGGNG--------------- 308
* * * * *** * ** * ** * * * *
consensus_6308#0 TTTATTTTTTATGTTAAGATATGTTTTCTTTGATTGCTTCGTAACTCGTGGAGGTGCTTT 657
consensus_6308#1 TTTATTTTTTATGTT--------------------------------------------- 385
consensus_6308#2 ------------------------------------------------------------
consensus_6308#0 TGTGCTTCAAACCAAATCTCATTTTTGCAGTATTTTTTAGTTTATTGAGTTGCAGCTACC 717
consensus_6308#1 ------------------------------------------------------------
consensus_6308#2 ------------------------------------------------------------
consensus_6308#0 AGTTTTGTTTTATATTTTTGGTTTAAATTTTGGTTTTTTGGGCTTTACGGCTGGTTCTAG 777
consensus_6308#1 ------------------------------------------------------------
consensus_6308#2 ------------------------------------------------------------
consensus_6308#0 TTGTTGTACATCAGGACAGGACTTGAGAACAAACGCTCCCGCTCTCGCTCTCTTTCTCTC 837
consensus_6308#1 ------------------------------------------------------------
consensus_6308#2 ------------------------------------------------------------
consensus_6308#0 TCTATCACACACTTTTGTGTGTATTGTGAACGATTTAGTATTTTGTTTTTCAGTGTATGA 897
consensus_6308#1 ------------------------------------------------------------
consensus_6308#2 ------------------------------------------------------------
consensus_6308#0 GATTTTTCGGTAACAATTTGGTTAATTTTGTTTGCGCTGATATGCGATCCACACATGCGA 957
consensus_6308#1 ------------------------------------------------------------
consensus_6308#2 ------------------------------------------------------------
consensus_6308#0 ACCTGGGTGTAGTGGCACAGACAAGAGCGGGAAGGAAAAAGCCGTAAACATACAGAGCGT 1017
consensus_6308#1 ------------------------------------------------------------
consensus_6308#2 ------------------------------------------------------------
consensus_6308#0 GTTATAAAAACAGCAGAGGATGAAGAAAAACGCGCGCAGAAGAATTTCAGCAGGTCAATT 1077
consensus_6308#1 ------------------------------------------------------------
consensus_6308#2 ------------------------------------------------------------
consensus_6308#0 TCTCCGCTAGGCACCGTGCAAAACCAGTTACGCCTATGATTTCCCCTCAATTAAACAACT 1137
consensus_6308#1 ------------------------------------------------------------
consensus_6308#2 ------------------------------------------------------------
consensus_6308#0 CCTGTGTGAAAGCGGAAGGAGCGTGCAAGACACACACACACGCACACCGCGATGGAATGT 1197
consensus_6308#1 ------------------------------------------------------------
consensus_6308#2 ------------------------------------------------------------
consensus_6308#0 TTCTTTCTTGTACATGCGTTTATATTTCGGTCCCCAGTAAAAAAAAACTCCAACCAACAA 1257
consensus_6308#1 ------------------------------------------------------------
consensus_6308#2 ------------------------------------------------------------
consensus_6308#0 CCAACAGCACACCCCCAACGTACCCGAGGATCGTTCTTGTTTCACTTGTTTTTTTTTTTC 1317
consensus_6308#1 ------------------------------------------------------------
consensus_6308#2 ------------------------------------------------------------
consensus_6308#0 GTTTTCCCCATTGTGCGAAATTAAGTACTGCGAAAAGAAGAAGGGCGCCTTAATGTTTAG 1377
consensus_6308#1 ------------------------------------------------------------
consensus_6308#2 ------------------------------------------------------------
consensus_6308#0 GCAAATAGCAAAGGAGTAGGCTGAAAAGCAACCCCCCGCGCGAGGGACAACGGTTCGCAT 1437
consensus_6308#1 ------------------------------------------------------------
consensus_6308#2 ------------------------------------------------------------
consensus_6308#0 TTTCATCGGAAAAAAGGAAGCGAAAAGCACACGCAAATCCCTGGCCCTTGAAACGAAGTG 1497
consensus_6308#1 ------------------------------------------------------------
consensus_6308#2 ------------------------------------------------------------
consensus_6308#0 TATCTGTGTTTTTTAAACGCTGAGATTGAAGAACAAGAGAAAAAAAAACACGAGAAAGAC 1557
consensus_6308#1 ------------------------------------------------------------
consensus_6308#2 ------------------------------------------------------------
consensus_6308#0 TAATAATGAGACGATGAGACGAGAAAATCAATCCTATTTCAGAGAGAAGGAGGAGAAGGG 1617
consensus_6308#1 ------------------------------------------------------------
consensus_6308#2 ------------------------------------------------------------
consensus_6308#0 GGTGTGTATGAATTTTTACCGCTACCGCTAACGCAACTATCAACTACTACATCTACTATG 1677
consensus_6308#1 ------------------------------------------------------------
consensus_6308#2 ------------------------------------------------------------
consensus_6308#0 AAGAAATAAATATTCTATAAAATATACAAAACGTGAGCAAACACAACCACAAGCA 1732
consensus_6308#1 -------------------------------------------------------
consensus_6308#2 -------------------------------------------------------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||