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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6316#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 804 fasta sequence
[AGCAGATCCCCGAGTTAATAATGGGTGGGTGGGTTGGTTGTCTGACCGCTGGGCAATGTAGAGAAAACAAACGTTTTTGTTTTGTTCGTTTAAACGC-AAATGAATGGAAGGGGAGACACAGGAT-AAGAAGCAGTGT-AACACACTGACACACACACACACACACAAAATAAACAAAGCTTACAATAAGTGAAACGATTACCA-CTAATGTGCATATTT-CATTT-CAT-CACTCGTAGCAATTGATGATTATGCTGAGAATAGGACGAAACGGAACAGGATACGAACGAAACGGAAAAAGGGTGAGAGGGGAGTGGTGGTCTTGGACTGTAGACGATTGATTGATACGAGAGACGGGAGAGAGAGAGGGAATGTTGACTTGGATTCTAGTGGGTTTGGAATGT-GGAACAATC-AAAGAACGAAGGACAAAACGATGGTTTTGGTTGGTGGCTGGCGTGGCCCATTCGTTGTTGTACGGTCTCAATCAAAACGGGTCATTTTCTTCAACTCAAACGTAACACACCATCAACATGCACACACACAGATACGCATTTTTTTGGTCTTTCC-AAAAAAAAAAGGAATAAACGAACTACGGGCAGTAGTAGCAGCAATGCAACAACGGTTCAAACAACGTAAACGCCTTGGCACAGATTTCGAACCATGCAAGCGAAAAGATTTCCGTTTTTAAGGACTTTTTTATCCTTTTCCAACACAACAATATATGTGTTTGTGTGCATGTGCTGGTGCGTGTGTGTGTGTGTGTGTGTGTGTGGAAGTAAGAGTTGGCCCTTTTAACATTGTACGGCTGCA]
[+] EMBL AL696068 [AGCAGATCCCCGAGTTAATAATGGGTGGGTGGGTTGGTTGTCTGACCGCTGGGCAATGTAGAGAAAACAAACGTTTTTGTTTTGTTCGTTTAAACGC AAATGAATGGAAGGGGAGACACAGGAT AAGAAGCAGTGT AACACACTGACACACACACACACACACAAAATAAACAAAGCTTACAATAAGTGAAACGATTACCA CTAATGTGCATATTT CATTT CAT CACTCGTAGCAATTGATGATTATGCTGAGAATAGGACGAAACGGAACAGGATACGAACGAAACGGAAAAAGGGTGAGAGGGGAGTGGTGGTCTTGGACTGTAGACGATTGATTGATACGAGAGACGGGAGAGAGAGAGGGAATGTTGACTTGGATTCTAGTGGGTTTGGAATGTNGGAACAATCAAAAGAACGAAGGACAAAAC ]
[+] EMBL BM632711 [ ccgGAGAAAACAAACGTTTTTGTTTTGTTCGTTTAAACGCAAAATGAATGGAAGGGGAGACACAGGATAAAGAAGCAGTGTAAACACACTGACACACACACACACACACAAAATAAACAAAGCTTACAATAAGTGAAACGATTACAACCTAATGTGCATATTTACATTTACATACACTCGTAGCAATTGATGATAATGCTGAGAATAGGACGAAACGGAACAGGATACGAA GAAA GGAAAAAGGGTGAGAGGGGAGTGGTGGTCTTGGACTGTAGACGATTGATTGATACGAGAGA GGGAGAGAGAGAGGGAATG TGA TTGGATT TAGTGGGTTTGGAATGT GGAACAATC AAAGAACGAAGGACAAAACGATGGTTTTGGTTGGTGGCTGGCGTGGCCCATTCGTTGTTGTACGGTCTCAATCAAAACGGGTCATTTTCTTCAACTCAAACGTAACACACCATCAACATGCACACACACAGATACGCATTTTTTTGGTCTTTCC AAAAAAAAAAGGAATAAACGAACTACGGGCAGTAGTAGCAGCAATGCAACAACGGTTCAAACAACGTAAACGCCTTGGCACAGATTTCGAACCATGCAAGCGAAAAGATTTCCGTTTTTAAGGACTTTTTTATCCTTTTCCAACACAACAATATATGTGTT ]
[+] EMBL BX612769 [ ATGT GGAACAATC AAAGAACGAAGGACAAAACGATGGTTTTCGTTGGTGGCTGGCGTGGCCCATTCGTTGTTGTACGGTCTCAATCAAAACGGGTCATTTTCTTCAACTCAAACGTAACACACCATCAACATGCACACACACAGATACGCATTTTTTTGGTCTTTCCAAAAAAAAAAAGGAATAAACGAACTACGGGCAGTAGTAGCAGCAATGCAACAACGGTTAAAGCAACGTAAACGCCTTGGCACAGATTTCGAACCATGCAAGCGAAAAGA TTCCGTTTTTAAGGAC TTTTTATCCTTTCCAAACACAACAATATATGTGTTTGTGTGCATGTGCTGGTGCGTGTGTGTGTGTGTGTGTGTGTGTGGAAGTAAGAGTTGGCCCTTTTAACATTGTACGGCTGCA]
consensusID : consensus_6316#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 789 fasta sequence
[CAGCAACCCCGTTTAGAAAGGAAAAAGGGTGAGACGGGAGTGNTGGTCTTGGACTGTAGACGATTGATTGATACGAGAGAGGGAGAGAGAGAGGGAATGTGATTGGATTATAGTGGGTTCTGGAATGTGGAACAATCAAAGCAACGAAGGACAAANCGNTGGTTTCTGGTTTGGTGGCTGGCGTGGCCCATTCGCTTGTTGTACGGTCTCAATCAAAACGGGTCATTTTCTTACAACTCAAACGTAACACACCATCAACATGCACANACACAGATACGCATTTTACGGTCTTTCCNAACACAAANAGGAATAAACGAACTACGGGCAGTAGTAGCAGCAATGCACNAACGGTTCAAACAACGTAAACGCCTTGGCCACAGATTTCGAACCATGCAAGCGAACNAGATTCCGTTATAAGGACTTTATCCTATACCAAACACAACCATATATGTGTACGGGTGCATGTGCTGGTGCGTGTGTGTGTGTGANGCTGANGNTGTGGAAAGATACAGCAGTTGACCCCCTATNTGNAAACATTGNTACGCGAATGCCAGNCAACANACCAGACGTACAACCGAAACCGGAAGANTGCATTGTTGNGANACTCAAGCGGCTTCCGTGACAGATCGGCGGACATGTGGCCGCNGGNTGGGTCACCCGCTCATTCCGCGANTAATATAGGAAATAGTACANACANTCGGCANTTCGACTACACGTAGGAAGGGAGGGNTTCAGAAAGAGGGAAGACAAATGNTNCTTTGACAGTTAAAAAAAACGCCGGATAGTGAT]
[+] EMBL AL692647 [CAGCAACCCCGTTTAGAAAGGAAAAAGGGTGAGACGGGAGTGNTGGTCTTGGACTGTAGACGATTGATTGATACGAGAGAGGGAGAGAGAGAGGGAATGTGATTGGATTATAGTGGGTTCTGGAATGTGGAACAATCAAAGCAACGAAGGACAAANCGNTGGTTTCTGGTTTGGTGGCTGGCGTGGCCCATTCGCTTGTTGTACGGTCTCAATCAAAACGGGTCATTTTCTTACAACTCAAACGTAACACACCATCAACATGCACANACACAGATACGCATTTTACGGTCTTTCCNAACACAAANAGGAATAAACGAACTACGGGCAGTAGTAGCAGCAATGCACNAACGGTTCAAACAACGTAAACGCCTTGGCCACAGATTTCGAACCATGCAAGCGAACNAGATTCCGTTATAAGGACTTTATCCTATACCAAACACAACCATATATGTGTACGGGTGCATGTGCTGGTGCGTGTGTGTGTGTGANGCTGANGNTGTGGAAAGATACAGCAGTTGACCCCCTATNTGNAAACATTGNTACGCGAATGCCAGNCAACANACCAGACGTACAACCGAAACCGGAAGANTGCATTGTTGNGANACTCAAGCGGCTTCCGTGACAGATCGGCGGACATGTGGCCGCNGGNTGGGTCACCCGCTCATTCCGCGANTAATATAGGAAATAGTACANACANTCGGCANTTCGACTACACGTAGGAAGGGAGGGNTTCAGAAAGAGGGAAGACAAATGNTNCTTTGACAGTTAAAAAAAACGCCGGATAGTGAT]
consensusID : consensus_6316#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 452 fasta sequence
[ATCCCCCGAGTAAAACGATGGTTTCGTTGGTGGCTGCGTGGCCATTCGTTGTTGTACGGTCTCAATCAAAACGGGTCATTTTCTTCAACTCAAACGTAACACACCATCAACATGCACACACACAGATACGCATTTTTTTGGTCTTTCCAAAAAAAAAAGGAATAAACGAACTACGGGCAGTAGTAGCAGCAATGCAACAACGGTTAAAGCAACGTAAACGCCTTGGCACAGATTTCGAACCATGCAAGCGAAAAGATTCCGTTTTTAAGGACTTTTTATCCTTTCCAAACACAACAATATATGTGTTGTGTGCATGTGCTGGTGCGTGTGTGTGTGTGTGTGTGTGTGTGGAAGTAAGAGTTGGCCCTTTGAACATTGTACGGCTGCAGCACAACAGAGTACACGATCGAGATGATGTGGAATTAGCACTTCGAGAGTCGGGTGGTGTGCCG]
[+] EMBL AL694583 [ATCCCCCGAGTAAAACGATGGTTTCGTTGGTGGCTGCGTGGCCATTCGTTGTTGTACGGTCTCAATCAAAACGGGTCATTTTCTTCAACTCAAACGTAACACACCATCAACATGCACACACACAGATACGCATTTTTTTGGTCTTTCCAAAAAAAAAAGGAATAAACGAACTACGGGCAGTAGTAGCAGCAATGCAACAACGGTTAAAGCAACGTAAACGCCTTGGCACAGATTTCGAACCATGCAAGCGAAAAGATTCCGTTTTTAAGGACTTTTTATCCTTTCCAAACACAACAATATATGTGTTGTGTGCATGTGCTGGTGCGTGTGTGTGTGTGTGTGTGTGTGTGGAAGTAAGAGTTGGCCCTTTGAACATTGTACGGCTGCAGCACAACAGAGTACACGATCGAGATGATGTGGAATTAGCACTTCGAGAGTCGGGTGGTGTGCCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6316#0 AGCAGATCCCCGAGTTAATAATGGGTGGGTGGGTTGGTTGTCTGACCGCTGGGCAATGTA 60
consensus_6316#2 ------------------------------------------------------------
consensus_6316#1 ------------------------------------------------------------
consensus_6316#0 GAGAAAACAAACGTTTTTGTTTTGTTCGTTTAAACGCAAATGAATGGAAGGGGAGACACA 120
consensus_6316#2 ------------------------------------------------------------
consensus_6316#1 ------------------------------------------------------------
consensus_6316#0 GGATAAGAAGCAGTGTAACACACTGACACACACACACACACACAAAATAAACAAAGCTTA 180
consensus_6316#2 ------------------------------------------------------------
consensus_6316#1 ------------------------------------------------------------
consensus_6316#0 CAATAAGTGAAACGATTACCACTAATGTGCATATTTCATTTCATCACTCGTAGCAATTGA 240
consensus_6316#2 ------------------------------------------------------------
consensus_6316#1 ------------------------------------------------------------
consensus_6316#0 TGATTATGCTGAGAATAGGACGAAACGGAACAGGATACGAACGAAACGGAAAAAGGGTGA 300
consensus_6316#2 ------------------------------------------------------------
consensus_6316#1 ----------------------------CAGCAACCCCGTTTAGAAAGGAAAAAGGGTGA 32
consensus_6316#0 GAGGGGAGTGGTGGTCTTGGACTGTAGACGATTGATTGATACGAGAGACGGGAGAGAGAG 360
consensus_6316#2 ------------------------------------------------------------
consensus_6316#1 GACGGGAGTGNTGGTCTTGGACTGTAGACGATTGATTGATACGAGAGA-GGGAGAGAGAG 91
consensus_6316#0 AGGGAATGTTGACTTGGATTCTAGTGGGTT-TGGAATGTGGAACAATCAAAG-AACGAAG 418
consensus_6316#2 ---------------------------------------------------A-TCCCCCG 8
consensus_6316#1 AGGGAATGT--GATTGGATTATAGTGGGTTCTGGAATGTGGAACAATCAAAGCAACGAAG 149
* *
consensus_6316#0 GACAAAACGATGGTTTT--GGTTGGTGGCTGGCGTGGCCCATTCG-TTGTTGTACGGTCT 475
consensus_6316#2 AGTAAAACGATGGTTTC--G-TTGGTGGCTG-CGTGGCC-ATTCG-TTGTTGTACGGTCT 62
consensus_6316#1 GACAAANCGNTGGTTTCTGGTTTGGTGGCTGGCGTGGCCCATTCGCTTGTTGTACGGTCT 209
*** ** ****** * ********** ******* ***** **************
consensus_6316#0 CAATCAAAACGGGTCATTTTCTT-CAACTCAAACGTAACACACCATCAACATGCACACAC 534
consensus_6316#2 CAATCAAAACGGGTCATTTTCTT-CAACTCAAACGTAACACACCATCAACATGCACACAC 121
consensus_6316#1 CAATCAAAACGGGTCATTTTCTTACAACTCAAACGTAACACACCATCAACATGCACANAC 269
*********************** ********************************* **
consensus_6316#0 ACAGATACGCATTTTTTTGGTCTTTCCAAAAAAAAAAGGAATAAACGAACTACGGGCAGT 594
consensus_6316#2 ACAGATACGCATTTTTTTGGTCTTTCCAAAAAAAAAAGGAATAAACGAACTACGGGCAGT 181
consensus_6316#1 ACAGATACGCATTTTACGGTCTTTCCNAACACAAANAGGAATAAACGAACTACGGGCAGT 329
*************** * ** * ** * *** ************************
consensus_6316#0 AGTAGCAGCAATGCAACAACGGTTCAAACAACGTAAACGCCTTGGC-ACAGATTTCGAAC 653
consensus_6316#2 AGTAGCAGCAATGCAACAACGGTTAAAGCAACGTAAACGCCTTGGC-ACAGATTTCGAAC 240
consensus_6316#1 AGTAGCAGCAATGCACNAACGGTTCAAACAACGTAAACGCCTTGGCCACAGATTTCGAAC 389
*************** ******* ** ****************** *************
consensus_6316#0 CATGCAAGCGAAAAGATTTCCGTTTTTAAGGACTTTTTTATCCTTTTCCAACACAACAAT 713
consensus_6316#2 CATGCAAGCGAAAAGATT-CCGTTTTTAAGGACTTTTT-ATCCTTTCCAAACACAACAAT 298
consensus_6316#1 CATGCAAGCGAACNAGATTCCGTTAT-AAGGACTTTAT--CCTATACCAAACACAACCAT 446
************ * ***** * ********* * * * * ******** **
consensus_6316#0 ATATGTGTTTGTGTGCATGTGCTGGTGCGTGTGTGTGTGTGTG--TGTGTGTGTGGAAG- 770
consensus_6316#2 ATATGTGTT-GTGTGCATGTGCTGGTGCGTGTGTGTGTGTGTG--TGTGTGTGTGGAAG- 354
consensus_6316#1 ATATGTGTACGGGTGCATGTGCTGGTGCGTGTGTGTGTGTGANGCTGANGNTGTGGAAAG 506
******** * ***************************** ** *******
consensus_6316#0 ---TAAGAGTTGGCCCTTTT------AACATTGT---ACGGCTGCA-------------- 804
consensus_6316#2 ---TAAGAGTTGGCCCTTTG------AACATTGT---ACGGCTGCAGCACAACAGAGTAC 402
consensus_6316#1 ATACAGCAGTTGACCCCCTATNTGNAAACATTGNTACGCGAATGCCAGNCAACANACCAG 566
* ***** *** * ******* ** ***
consensus_6316#0 ------------------------------------------------------------
consensus_6316#2 ACGATCGAGATGATGTGGAATTAGCACTTCGAGAGTCGGGTGGTGTGCCG---------- 452
consensus_6316#1 ACGTACAACCGAAACCGGAAGANTGCATTGTTGNGANACTCAAGCGGCTTCCGTGACAGA 626
consensus_6316#0 ------------------------------------------------------------
consensus_6316#2 ------------------------------------------------------------
consensus_6316#1 TCGGCGGACATGTGGCCGCNGGNTGGGTCACCCGCTCATTCCGCGANTAATATAGGAAAT 686
consensus_6316#0 ------------------------------------------------------------
consensus_6316#2 ------------------------------------------------------------
consensus_6316#1 AGTACANACANTCGGCANTTCGACTACACGTAGGAAGGGAGGGNTTCAGAAAGAGGGAAG 746
consensus_6316#0 -------------------------------------------
consensus_6316#2 -------------------------------------------
consensus_6316#1 ACAAATGNTNCTTTGACAGTTAAAAAAAACGCCGGATAGTGAT 789
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||