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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6322#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1179 fasta sequence
[CCGCCCACGCGTCCGGACGGTGGAGGAAGTTACTTGCGGCCATGATTTGCCCCCGTGCGATGGACTCTATGGAGTGCCAGAACTCTGTTTCCTGGAACCGAAACCGGGCAATTGTCGCGACTCCCAGACACGCTGGTACTTCGATAGCGATAAGAACGACTGCTCGATCCTTTTCTTCACTGGATGCGGTGGCAACAACAACAACTTTATGTCCCGCGAGGACTGTTTGGATACGTGCAGTAAAGATCGTAAATTTACCAACATTCCGATACGGGACCAGATCAGCACGAACAGTGCGGGCGGTGGTTCCGACTACGGCTCGGACCTGAAGCAGGACTGCAAGACGTCACACTGGAAGCGGGGCCCGTGCAACGCGACCCTGCGGCGAAGGCTTCCGCGTGAAGAGTCGCACAATTCTGGTGCATCCGTCGAACGGTGGCCAGCGATGTCCGCGGAAGCTGCGCAAGGTCGAGCGGTGCTTCGTGCACTGCGACTCGTCCCGCCACGACACGAATTCCCTCGTGGGGCCCCAGCACCCGCTACGAGCCGGAACCGATCGAGTGCGAGTACTCGGCCTGGGTCCGCGTGGTCACCGTGCAGCAAGACCTGCGGGGACTATGCCGTGCAGCAGCGCACCCGCTACGTGCTCAATCCCGAGAACGCTCGGTTCTGTCCGCACCGGCTCGAGGAGCGGAAATGTGATATCATGCCTTGCCTGTTGGGCAAATAGAGCCGGGCCGGTTTGTGACCCAGGTGCCAATGGTGGCGCGGTCGTCCGACGACGATGATGCAAAACTCGTGCAGGACAGTCGTGGCCCGTTAGATTTATTTCCGCTCACTCGCGCTACGTATATAGGTGTGTAGTGTGTGTATGTGTACATCGCACGGCCGTGGGTTGAGTTAGAGAGTGTTAGAAGCAGCACCAAAAAAAGATGGAAGTGATGACTCCAACGCGACAGGAAGCAGAAATGTGGTCGCTCTGTTGCATCGTTTTTTGTGCACCCTGTTTCCCGATACATCTCATCGATTGCATCGATATTTTATGTATCTATATAGTTTTTTGTTTTGTTTTATTATTCCTCACCCCCCTTTGAGTTGTCGGACATCCCAATCCGACATTGATGAATGAAGCGCAGCTTCGCCGTCGTGGAACGTGACGGGAAAACAGAAGCTAGTGGC]
[+] EMBL BM582778 [CCGCCCACGCGTCCGGACGGTGGAGGAAGTTACTTGCGGCCATGATTTGCCCCCGTGCGATGGACTCTATGGAGTGCCAGAACTCTGTTTCCTGGAACCGAAACCGGGCAATTGTCGCGACTCCCAGACACGCTGGTACTTCGATAGCGATAAGAACGACTGCTCGATCCTTTTCTTCACTGGATGCGGTGGCAACAACAACAACTTTATGTCCCGCGAGGACTGTTTGGATACGTGCAGTAAAGATCGTAAATTTACCAACATTCCGATACGGGACCAGATCAGCACGAACAGTGCGGGCGGTGGTTCCGACTACGGCTCGGACCTGAAGCAGGACTGCAAGACGTCACACTGGAAGCGGGGCCCGTGCAACGCGACCCTGCGGCGAAGGCTTCCGCGTGAAGAGTCGCACAATTCTGGTGCATCCGTCGAACGGTGGCCAGCGATGTCCGCGGAAGCTGCGCAAGGTCGAGCGGTGCTTCGTGCACTGCGACTCGTCCCGCCACGACACGAATTCCCTCGTGGGGCCCCAGCACCCGCTACGAGCCGGAACCGATCGAGTGCGAGTACTCGGCCTGGGTCCGCGTGGTCACCGTGCAGCAAGACCTGCGGGGACT ]
[+] EMBL BX613483 [ TTCCGCGTGAAGAGTCGCACAATTCTGGTGCATCCGTCGAACGGTGGCCAGCGATGTCCGCGGAAGCTGCGCAAGGTCGAGCGGTGCTTCGTGCACTGCGACTCATCCCGCCACGACACGAA TCCCTCGTGGGGCCCCAGCACCCGCTACGAGCCGGAACCGATCGAGTGCGAGTACTCGGCCT GGTCAGCGTGGTCACCGTGCAGCAAGACCTGCGGCGACTATGCCGTGCAGCAGCGCACCCGCTACGTGCTCAATCCCGAGAACGCTCGGTTCTGTCCGCACCGGCTCGAGGAGCGGAAATGTGATATCATGCCTTGCCTGTTGGGCAAATAGAGCCGGGCCGGTTTGTGACCCAGGTGCCAATGGTGGCGCGGTCGTCCGACGACGATGATGCAAAACTCGTGCAGGACAGTCGTGGCCCGTTAGATTTATTTCCGCTCACTCGCGCTACGTATATAGGTGTGTAGTGTGTGTATGTGTACATCGCACGGCCGTGGGTTGAGTTAGAGAGTGTTAGAAGCAGCACCAAAAAAAGATGGAAGTGATGACTCCAACGCGACAGGAAGCAGAAATGTGGTCGCTCTGTTGCATCGTTTTTTGTGCACCCTGTTTCCCGATACATCTCATCGATTGCATCGATATTTTATGTATCTATATAGTTTTTTGTTTTGTTTTATTATTCCTCAACCCCCTTTGAGTTGTCGGACATCCCAATCCGACATTGATGAATGAAGCGCAGCTTCGCCGTCGTGGAACGTGACGGGAAAACAGAAGCTAGTGGC]
[+] EMBL BX608711 [ AGCAGAAATGTCGTCGCTCTGTTGCATCGTTTTTTGTGCACTCTGTTTCCCGATACATCTCATCGATTGCATCGATATTTTATGTATCTATATAGTTTTTTGTTTTGTTTTATTATTCCTCACCCCCCTTTGAGTTGT ]
[+] EMBL AGA281486 [ TTTTTTTTTTTTTTTTATTCCTCACCCCCCTTTGAGTTGTCGGACATCCCAATCCGACATTGATGAATGAAG ]
consensusID : consensus_6322#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 271 fasta sequence
[CAAGAATCGCACGAGNTGCAAACTCGTGCAGGACAGTCGTGCGCCCGTTAGATTTATTTCCGCTCACTCGCGCTACGTATATAGGTGTGTAGTGTGTGTATGTGTACATCGCACGGCCGTGGGTTGAGTTAGAGAGTGTTAGAAGCAGCACCAAAAAAAGATGGAAGTGATGACTCCAACGCGACAGGAAGCAGAAATGTGGTCGCTCTGTTGCATCGTTTATGTGCACTCTGTTTCCCGAGTACATCTACATCGATATGCATCGATAATT]
[+] EMBL BX466219 [CAAGAATCGCACGAGNTGCAAACTCGTGCAGGACAGTCGTGCGCCCGTTAGATTTATTTCCGCTCACTCGCGCTACGTATATAGGTGTGTAGTGTGTGTATGTGTACATCGCACGGCCGTGGGTTGAGTTAGAGAGTGTTAGAAGCAGCACCAAAAAAAGATGGAAGTGATGACTCCAACGCGACAGGAAGCAGAAATGTGGTCGCTCTGTTGCATCGTTTATGTGCACTCTGTTTCCCGAGTACATCTACATCGATATGCATCGATAATT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6322#0 CCGCCCACGCGTCCGGACGGTGGAGGAAGTTACTTGCGGCCATGATTTGCCCCCGTGCGA 60
consensus_6322#1 ------------------------------------------------------------
consensus_6322#0 TGGACTCTATGGAGTGCCAGAACTCTGTTTCCTGGAACCGAAACCGGGCAATTGTCGCGA 120
consensus_6322#1 ------------------------------------------------------------
consensus_6322#0 CTCCCAGACACGCTGGTACTTCGATAGCGATAAGAACGACTGCTCGATCCTTTTCTTCAC 180
consensus_6322#1 ------------------------------------------------------------
consensus_6322#0 TGGATGCGGTGGCAACAACAACAACTTTATGTCCCGCGAGGACTGTTTGGATACGTGCAG 240
consensus_6322#1 ------------------------------------------------------------
consensus_6322#0 TAAAGATCGTAAATTTACCAACATTCCGATACGGGACCAGATCAGCACGAACAGTGCGGG 300
consensus_6322#1 ------------------------------------------------------------
consensus_6322#0 CGGTGGTTCCGACTACGGCTCGGACCTGAAGCAGGACTGCAAGACGTCACACTGGAAGCG 360
consensus_6322#1 ------------------------------------------------------------
consensus_6322#0 GGGCCCGTGCAACGCGACCCTGCGGCGAAGGCTTCCGCGTGAAGAGTCGCACAATTCTGG 420
consensus_6322#1 ------------------------------------------------------------
consensus_6322#0 TGCATCCGTCGAACGGTGGCCAGCGATGTCCGCGGAAGCTGCGCAAGGTCGAGCGGTGCT 480
consensus_6322#1 ------------------------------------------------------------
consensus_6322#0 TCGTGCACTGCGACTCGTCCCGCCACGACACGAATTCCCTCGTGGGGCCCCAGCACCCGC 540
consensus_6322#1 ------------------------------------------------------------
consensus_6322#0 TACGAGCCGGAACCGATCGAGTGCGAGTACTCGGCCTGGGTCCGCGTGGTCACCGTGCAG 600
consensus_6322#1 ------------------------------------------------------------
consensus_6322#0 CAAGACCTGCGGGGACTATGCCGTGCAGCAGCGCACCCGCTACGTGCTCAATCCCGAGAA 660
consensus_6322#1 ------------------------------------------------------------
consensus_6322#0 CGCTCGGTTCTGTCCGCACCGGCTCGAGGAGCGGAAATGTGATATCATGCCTTGCCTGTT 720
consensus_6322#1 ------------------------------------------------------------
consensus_6322#0 GGGCAAATAGAGCCGGGCCGGTTTGTGACCCAGGTGCCAATGGTGGCGCGGTCGTCCGAC 780
consensus_6322#1 ------------------------------------------------CAAGAATCGCAC 12
* ** **
consensus_6322#0 GACGATGATGCAAAACTCGTGCAGGACAGTCGTG-GCCCGTTAGATTTATTTCCGCTCAC 839
consensus_6322#1 GA----GNTGCAAA-CTCGTGCAGGACAGTCGTGCGCCCGTTAGATTTATTTCCGCTCAC 67
** * ****** ******************* *************************
consensus_6322#0 TCGCGCTACGTATATAGGTGTGTAGTGTGTGTATGTGTACATCGCACGGCCGTGGGTTGA 899
consensus_6322#1 TCGCGCTACGTATATAGGTGTGTAGTGTGTGTATGTGTACATCGCACGGCCGTGGGTTGA 127
************************************************************
consensus_6322#0 GTTAGAGAGTGTTAGAAGCAGCACCAAAAAAAGATGGAAGTGATGACTCCAACGCGACAG 959
consensus_6322#1 GTTAGAGAGTGTTAGAAGCAGCACCAAAAAAAGATGGAAGTGATGACTCCAACGCGACAG 187
************************************************************
consensus_6322#0 GAAGCAGAAATGTGGTCGCTCTGTTGCATCGTTTTTTGTGCACCCTGTTTCCCGA-TACA 1018
consensus_6322#1 GAAGCAGAAATGTGGTCGCTCTGTTGCATCGTTTAT-GTGCACTCTGTTTCCCGAGTACA 246
********************************** * ****** *********** ****
consensus_6322#0 TCT-CATCGAT-TGCATCGATATTTTATGTATCTATATAGTTTTTTGTTTTGTTTTATTA 1076
consensus_6322#1 TCTACATCGATATGCATCGATAATT----------------------------------- 271
*** ******* ********** **
consensus_6322#0 TTCCTCACCCCCCTTTGAGTTGTCGGACATCCCAATCCGACATTGATGAATGAAGCGCAG 1136
consensus_6322#1 ------------------------------------------------------------
consensus_6322#0 CTTCGCCGTCGTGGAACGTGACGGGAAAACAGAAGCTAGTGGC 1179
consensus_6322#1 -------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||