cluster # 6328

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Anopheles gambiae
cluster # 6328 cluster # 6328 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6328#0 length = 658 sequences # 3

consensus_6328#1 length = 475 sequences # 2

consensusID : consensus_6328#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 658
fasta sequence

                              [CCGCGGACGCGTGCGCGAACGGGTGTGCGCGGTGGCGAACGGCAACAGCAAAGCAGAACAACAAAAAAACCCGGCAACAACGACCTCGACTGTACTGTAGAGAGCAGAGAGAGAGAGAGAGATAGAGAGTAGCAGCAAAAGAGGTTCGTCGCCAGCACGCTTCGTTTGGTTAGATATTGGTAGCCGCCTGGGTCTGGCGTTACACTCTCGCGTTGCAAGCTTTGTGTTGGTGTTTTCTGCAGAGATCTTACCCAGCAAAAGCAACCCGTATCTGTGCAGAAACGAAAGTGTTTGTGTACATGTGTGTGTGTGTGTGTGTGTGTGTGTCTGTGAAGTAGTGAACCAGCAAGAAAAAGCCTCTGCCAGACGAGAATGTGCTAGGCCGCAGAGTGTTCGGTGTTCAACGCCACTGACCCCCCCGTCGATCAAACCAATTTCTCTCAATTGATGCCTCTAAGCCGCCGCGTTTGCCTGTGCTGTGTGGCGAGATAATTGGCTGTTAGAACACCGTTTCACACTGCCATCACCATTCAACACAACCCGAGACAGCTGAGCACACAAAGAAATCCAGACAGGGCAATCCAGAGGCGGGCAAGATGAAGATGCTGCTGCCAGTCGTGACCGTGCTGCTGGTGCTGGTGCTGGCACCCGCCGGGCA]

[+] EMBL BM601604             [CCGCGGACGCGTGGGCGAACGGGTGTGCGCGGTGGCGAACGGCAACAGCAAAGCAGAACAACAAAAAAACCCGGCAACAACGACCTCGACTGTACTGTAGAGAGCAGAGAGAGAGAGAGAGATAGAGAGTAGCAGCAAAAGAGGTTCGTCGCCAGCACGCTTCGTTTGGTTAGATATTGGTAGCCGCCTGGGTCTGGCGTTACACTCTCGCGTTGCAAGCTTTGTGTTGGTGTTTTCTGCAGAGATCTTACCCAGCAAAAGCAACCCGTATCTGTGCAGAAACGAAAGTGTTTGTGTACATGTGTGTGTGTGTGTGTGTGTGTGTGTCTGTGAAGTAGTGAACCAGCAAGAAAAAGCCTCTGCCAGACGAGAATGTGCTAGGCCGCAGAGTGTTCGGTGTTCAACGCCACTGACCCCCCCGTCGATCAAACCAATTTCTCTCAATTGATGCCTCTAAGCCGCCGCGTTTGCCTGTGCTGTGTGGCGAGATAATTGGCTGTTAGAACACCGTTTCACACTGCCATCACCATTCAACACAACCCGAGACAGCTGAGCACACAAAGAAATCCAGACAGGGCAATCCAGAGGCGGGCAAGATGAAGATGCTGCTGCCAGTCGTGACCGTGCTGCTGGTGCTGGTGCTGGCACCCGCCGGGCA]
[+] EMBL BM585188             [            cCGCGAACGGGTGTGCGCGGTGGCGAACGGCAACAGCAAAGCAGAACAACAAAAAAACCCGGCAACAACGACCTCGACTGTACTGTAGAGAGCAGAGAGAGAGAGAGAGATAGAGAGTAGCAGCAAAAGAGGTTCGTCGCCAGCACGCTTCGTTTGGTTAGATATTGGTAGCCGCCTGGGTCTGGCGTTACACTCTCGCGTTGCAAGCTTTGTGTTGGTGTTTTCTGCAGAGATCTTACCCAGCAAAAGCAACCCGTATCTGTGCAGAAACGAAAGTGTTTGTGTACATGTGTGTGTGTGTGTGTGTGTGTGTGTCTGTGAAGTAGTGAACCAGCAAGAAAAAGCCTCTGCCAGACGAGAATGTGCTAGGCCGCAGAGTGTTCGGTGTTCAACGCCACTGACCCCCCCGTCGATCAAACCAATTTCTCTCAATTGATGCCTCTAAGCCGCCGCGTTTGCCTGTGCTGTGTGGCGAGATAATTGGCTGTTAGAACACCGTTTCACACTGCCATCACCATTCAACACAACCCGAGACAGCTGAGCACACAAAGAAATCCAGACAGGGCAATCCAGAGGCGGGCAAGATGAAGATGCTGCTGCCAGTCGTGA                                     ]
[+] EMBL BM615287             [             ccgGAACGGGTGTGCGCGGTGGCGAACGGCAACAGCAAAGCAGAACAACAAAAAAACCCGGCAACAACGACCTCGACTGTACTGTAGAGAGCAGAGAGAGAGAGAGAGATAGAGAGTAGCAGCAAAAGAGGTTCGTCGCCAGCACGCTTCGTTTGGTTAGATATTGGTAGCCGCCTGGGTCTGGCGTTACACTCTCGCGTTGCAAGCTTTGTGTTGGTGTTTTCTGCAGAGATCTTACCCAGCAAAAGCAACCCGTATCTGTGCAGAAACGAAAGTGTTTGTGTACATGTGTGTGTGTGTGTGTGTGTGTGTGTCTGTGAAGTAGTGAACCAGCAAGAAAAAGCCTCTGCCAGACGAGAATGTGCTAGGCCGCAGAGTGTTCGGTGTTCAACGCCACTGACCCCCCCGTCGATCAAACCAATTTCTCTCAATTGATGCCTCTAAGCCGCCGCGTTTGCCTGTGCTGTGTGGCGAGATAATTGGCTGTTAGAACACCGTTTCACACTGCCATCACCATTCAACACA                                                                                                                        ]




>consensus_6328#0
CCGCGGACGCGTGCGCGAACGGGTGTGCGCGGTGGCGAACGGCAACAGCAAAGCAGAACA
ACAAAAAAACCCGGCAACAACGACCTCGACTGTACTGTAGAGAGCAGAGAGAGAGAGAGA
GATAGAGAGTAGCAGCAAAAGAGGTTCGTCGCCAGCACGCTTCGTTTGGTTAGATATTGG
TAGCCGCCTGGGTCTGGCGTTACACTCTCGCGTTGCAAGCTTTGTGTTGGTGTTTTCTGC
AGAGATCTTACCCAGCAAAAGCAACCCGTATCTGTGCAGAAACGAAAGTGTTTGTGTACA
TGTGTGTGTGTGTGTGTGTGTGTGTGTCTGTGAAGTAGTGAACCAGCAAGAAAAAGCCTC
TGCCAGACGAGAATGTGCTAGGCCGCAGAGTGTTCGGTGTTCAACGCCACTGACCCCCCC
GTCGATCAAACCAATTTCTCTCAATTGATGCCTCTAAGCCGCCGCGTTTGCCTGTGCTGT
GTGGCGAGATAATTGGCTGTTAGAACACCGTTTCACACTGCCATCACCATTCAACACAAC
CCGAGACAGCTGAGCACACAAAGAAATCCAGACAGGGCAATCCAGAGGCGGGCAAGATGA
AGATGCTGCTGCCAGTCGTGACCGTGCTGCTGGTGCTGGTGCTGGCACCCGCCGGGCA

consensusID : consensus_6328#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 475
fasta sequence

                              [AACGACCTCGACTGTACTGTAGAGAGCAGAGAGAGAGAGAGAGAGATAGAGAGTAGCAGCAAAAGAGGTTCGTCGCCAGCACGCTTCGTTTGGTTAGATATTGGTAGCCGCCTGGGTCTGGCGTTACACTCTCGTGTTCCAGGCTTTGTGTTGGTGTTTTCTGCAGAGATCTTACCCAGCAAAAGCAACCCATATCTGTGCAGAAACGAAAGT-GTTTGTGTATGTGTGTGTGTGTGTGTGTCTGTGAAGTAGTGAACCAGCAAG-AAAAGCCTCTGCCAGACGAGAATGTGCTAGGCCGCAGAGTGTTCGGTGTTCAACGCCACTGACCCCCAACCCGTCGATCAAACAAATTTCTCTCAATTGATGCCTAAGCCGCCGCATTTGCCTGTGCTGTGTGGCGAGATAATTGGCTGTAGAAAACCGGTTCACACTGGCATCACATTCAACACAACCCGACACAGCTGAGCACACAAAG]

[+] EMBL AGA285866            [AACGACCTCGACTGTACTGTAGAGAGCAGAGAGAGAGAGAGAGAGATAGAGAGTAGCAGCAAAAGAGGTTCGTCGCCAGCACGCTTCGTTTGGTTAGATATTGGTAGCCGCCTGGGTCTGGCGTTACACTCTCGTGTTCCAGGCTTTGTGTTGGTGTTTTCTGCAGAGATCTTACCCAGCAAAAGCAACCCATATCTGTGCAGAAACGAAAGT GTTTGTGTATGTGTGTGTGTGTGTGTGTCTGTGAAGTAGTGAACCAGCAAG AAAAGCCTCTGCCAGACGAGAATGTGCTAGGCCGCAGAGTGTTCGGTGTTCAACGCCACTGACCCCCAACCCGTCGATCAAACAAATTTCTCTCAATTGATGCCTAAGCCGCCGCATTTGCCTGTGCTGTGTGGCGAGATAATTGGCTGTAGAAAACCGGTTCACACTGGCATCACATTCAACACAACCCGACACAGCTGAGCACACAAAG]
[+] EMBL AGA283067            [                                                                                                                                                                                              CATATCTGTGCAGAAACGAAAGTKKTTTGTGTATGTGTGTGTGTGTGTGTGTCTGTGAAGTAGTGAACCAGCAAGAAAAAGCCTCTGCCAGACGAGAATGTGCTAGGCCGCAGAGTGTTCGGTGTTCAACGCCACTGACCCCCAACCCGTCGATCAAACCAATTTCTCTCAATTGATGCCTAAGCCGCCGCATTTGCCTGTGCTGTGTGGCGAGATAATTGGCTGT                                                             ]




>consensus_6328#1
AACGACCTCGACTGTACTGTAGAGAGCAGAGAGAGAGAGAGAGAGATAGAGAGTAGCAGC
AAAAGAGGTTCGTCGCCAGCACGCTTCGTTTGGTTAGATATTGGTAGCCGCCTGGGTCTG
GCGTTACACTCTCGTGTTCCAGGCTTTGTGTTGGTGTTTTCTGCAGAGATCTTACCCAGC
AAAAGCAACCCATATCTGTGCAGAAACGAAAGTGTTTGTGTATGTGTGTGTGTGTGTGTG
TCTGTGAAGTAGTGAACCAGCAAGAAAAGCCTCTGCCAGACGAGAATGTGCTAGGCCGCA
GAGTGTTCGGTGTTCAACGCCACTGACCCCCAACCCGTCGATCAAACAAATTTCTCTCAA
TTGATGCCTAAGCCGCCGCATTTGCCTGTGCTGTGTGGCGAGATAATTGGCTGTAGAAAA
CCGGTTCACACTGGCATCACATTCAACACAACCCGACACAGCTGAGCACACAAAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6328#0      CCGCGGACGCGTGCGCGAACGGGTGTGCGCGGTGGCGAACGGCAACAGCAAAGCAGAACA 60
consensus_6328#1      ------------------------------------------------------------
                                                                                  

consensus_6328#0      ACAAAAAAACCCGGCAACAACGACCTCGACTGTACTGTAGAGAGCAGAGAGAGAGAGAGA 120
consensus_6328#1      ------------------AACGACCTCGACTGTACTGTAGAGAGCAGAGAGAGAGAGAGA 42
                                        ******************************************

consensus_6328#0      GA--TAGAGAGTAGCAGCAAAAGAGGTTCGTCGCCAGCACGCTTCGTTTGGTTAGATATT 178
consensus_6328#1      GAGATAGAGAGTAGCAGCAAAAGAGGTTCGTCGCCAGCACGCTTCGTTTGGTTAGATATT 102
                      **  ********************************************************

consensus_6328#0      GGTAGCCGCCTGGGTCTGGCGTTACACTCTCGCGTTGCAAGCTTTGTGTTGGTGTTTTCT 238
consensus_6328#1      GGTAGCCGCCTGGGTCTGGCGTTACACTCTCGTGTTCCAGGCTTTGTGTTGGTGTTTTCT 162
                      ******************************** *** ** ********************

consensus_6328#0      GCAGAGATCTTACCCAGCAAAAGCAACCCGTATCTGTGCAGAAACGAAAGTGTTTGTGTA 298
consensus_6328#1      GCAGAGATCTTACCCAGCAAAAGCAACCCATATCTGTGCAGAAACGAAAGTGTTTGTGTA 222
                      ***************************** ******************************

consensus_6328#0      CATGTGTGTGTGTGTGTGTGTGTGTGTGTCTGTGAAGTAGTGAACCAGCAAGAAAAAGCC 358
consensus_6328#1      ----------TGTGTGTGTGTGTGTGTGTCTGTGAAGTAGTGAACCAGCAAGAAAA-GCC 271
                                ********************************************** ***

consensus_6328#0      TCTGCCAGACGAGAATGTGCTAGGCCGCAGAGTGTTCGGTGTTCAACGCCACTGACCCCC 418
consensus_6328#1      TCTGCCAGACGAGAATGTGCTAGGCCGCAGAGTGTTCGGTGTTCAACGCCACTGACCCCC 331
                      ************************************************************

consensus_6328#0      ---CCGTCGATCAAACCAATTTCTCTCAATTGATGCCTCTAAGCCGCCGCGTTTGCCTGT 475
consensus_6328#1      AACCCGTCGATCAAACAAATTTCTCTCAATTGATGCC--TAAGCCGCCGCATTTGCCTGT 389
                         ************* ********************  *********** *********

consensus_6328#0      GCTGTGTGGCGAGATAATTGGCTGTTAGAACACCGTTTCACACTGCCATCACCATTCAAC 535
consensus_6328#1      GCTGTGTGGCGAGATAATTGGCTGT-AGAAAACCGGTTCACACTGGCATCAC-ATTCAAC 447
                      ************************* **** **** ********* ****** *******

consensus_6328#0      ACAACCCGAGACAGCTGAGCACACAAAGAAATCCAGACAGGGCAATCCAGAGGCGGGCAA 595
consensus_6328#1      ACAACCCGACACAGCTGAGCACACAAAG-------------------------------- 475
                      ********* ******************                                

consensus_6328#0      GATGAAGATGCTGCTGCCAGTCGTGACCGTGCTGCTGGTGCTGGTGCTGGCACCCGCCGG 655
consensus_6328#1      ------------------------------------------------------------
                                                                                  

consensus_6328#0      GCA 658
consensus_6328#1      ---