|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6333#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 921 fasta sequence
[CCGGTCGTTAGCGGAGAAAGAGACAGTGCCACAGCGCGTTCATAAGCACGTGTGTTGTGCTGGGTGGGTGTGCTGAGTTGTGTTTGAATTTCACCCATCACCGGAAAAAGGAAGCGAATAGAAGGAAAAACCGTTAAAAGTGCTGCATGCATTGCACCTTACCCGTGCCGTGCACCAGACCAGCGTCCTATGTTAATATTTAGTACGTCGGGGTAGGATTTGAGTTGTATTTTTCCGCCTTTGCGGGTACTGTATCGTTCCGTTTTCGACCGGACCTGATCAAGCTTTCACCAGGCACCAGGCGTTCTCCCTTTATTCTTCCATCACAGGAACCCCCACCAACCAACAGCACTAGCAATGAGCCGACCCTTTGTACTGCTGGTCCTCGCGTGCCTAACCAATGTGTGTGTTTCGGAGGTTCCCGGCGATGCTATGCCCCGACCGAGCACCGACGATGATGATAGGCCCAATTACATGGCATTCAACGAAAACGCATTCAACGATAACGACCTTTCACCATCGCCCACTCCCTCGCCCAGTGACGCGTCCCGGCTGATGGGGGACGGTGCCACGGGTCACGGTGCTGGGGATGGATTAGCACGTGGTCTGTACGGCTGGAGTGGAGCTATGCCTCGATGGCGGCTCAGTCCGGAGCTGCTCGATGGTTTGAGGGCGGCGCTCGAGGTGGAAAACGACCTGTTTATGCCGCACAATGAGCAGATCAAGCTCGGCCGGACGGACCTGACCGGTGAGGAGGATTCGAACGGACAGTACGGGATTGATGGGGGGCGTTATCTTCCCAAGCGTGTGCCGACCGGATTTACGGGCATGCGAGGACGCCGTGTCCCTTCAAGGTTCAATGGAATGCGGGGCAAGAAGTCACTCTCACTATTCAACTGGAACAATCAGGCATCACGGGGG]
[+] EMBL BM583697 [CCGGTCGTTAGCGGAGAAAGAGACAGTGCCACAGCGCGTTCATAAGCACGTGTGTTGTGCTGGGTGGGTGTGCTGAGTTGTGTTTGAATTTCACCCATCACCGGAAAAAGGAAGCGAATAGAAGGAAAAACCGTTAAAAGTGCTGCATGCATTGCACCTTACCCGTGCCGTGCACCAGACCAGCGTCCTATGTTAATATTTAGTACGTCGGGGTAGGATTTGAGTTGTATTTTTCCGCCTTTGCGGGTACTGTATCGTTCCGTTTTCGACCGGACCTGATCAAGCTTTCACCAGGCACCAGGCGTTCTCCCTTTATTCTTCCATCACAGGAACCCCCACCAACCAACAGCACTAGCAATGAGCCGACCCTTTGTACTGCTGGTCCTCGCGTGCCTAACCAATGTGTGTGTTTCGGAGGTTCCCGGCGATGCTATGCCCCGACCGAGCACCGACGATGATGATAGGCCCAATTACATGGCATTCAACGAAAACGCA ]
[+] EMBL BM605229 [ ccgGTTAGCGGAGAAAGAGACAGTGCCACAGCGCGTTCATAAGCACGTGTTTTGTGCTGGGTGGGTGTGCTGAGTTGTGTTTGAATTTCACCCATCACCGGAAAAAGGAAGCGAATAGAAGGAAAAACCGTTAAAAGTGCTGCATGCATTGCACCTTACCCGTGCCGTGCACCAGACCAGCGTCCTATGTTAATATTTAGTACGTCGGGGTAGGATTTGAGTTGTATTTTTCCGCCTTTTCGGGTACTGTATCGTTCC TTTTCGACCGGATCTGATCGAGCTTTCACCAGGCACCAGGCGTTCTCTCTTTATTCTACCATCACAGGAACCCCAACCAACCAACAGCACTAGCAATGAGCCGACCCTTTGTACTGCTGGTCCTCGCGTGCCTAACCAATGTGTGTGTTTCGGAGGTTCCCGGCGATGCTATGCCCCGACCGAGCACCGACGATGATGATAGGCCCAATTACATGGCATTCAACGAAAACGCATTCAACGATAACGACCTTTCACCATCGCCCACTCCCTCGCCCAGTGACGCGTCCCGGCTGATGGGGGACGGTGCCACGGGTCACGGTGCTGGGGATGGATTAGCACGTGGTCTGTACGGCTGGAGTGGAGCTATGCCT ]
[+] EMBL BM628250 [ CCGCGCGTGCCTAACCAATGTGTGTGTTTCGGAGGTTCCCGGCGATGCTATGCCCCGACCGAGCACCGACGATGATGATAGGCCCAATTACATGGCATTCAACGAAAACGCATTCAACGATAACGACCTTTCACCATCGCCCACTCCCTCGCCCAGTGACGCGTCCCGGCTGATGGGGGACGGTGCCACGGGTCACGGTGCTGGGGATGGATTAGCACGTGGTCTGTACGGCTGGAGTGGAGCTATGCCTCGATGGCGGCTCAGTCCGGAGCTGCTCGATGGTTTGAGGGCGGCGCTCGAGGTGGAAAACGACCTGTTTATGCCGCACAATGAGCAGATCAAGCTCGGCCGGACGGACCTGACCGGTGAGGAGGATTCGAACGGACAGTACGGGATTGATGGGGGGCGTTATCTTCCCAAGCGTGTGCCGACCGGATTTACGGGCATGCGAGGACGCCGTGTCCCTTCAAGGTTCAATGGAATGCGGGGCAAGAAGTCACTCTCACTATTCAACTGGAACAATCAGGCATCACGGGGG]
consensusID : consensus_6333#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 854 fasta sequence
[GCAAGAATCGCCAGCCACGGTTTAAATGCCTGCACAATGAAGCAGATCGAGCTCGTTCGGACTTGACCTGACCGGTGAGGAGGATTCGAACGGACAGTACCGGGATTTGATGGGGGGCGTTATCTTCCCAAGCGTAGTGCCGACCGGATTTACGGGCATGCGAGGACCGTACGTTGTCCCTTCAGTGGGTTCAATGGAATGCGGGGCNAGAAAGTCACTCTCACTATTCAACTGGAACAATCAGTGCATCACACGGGGCGGTTCCAACTCTTACCGGGGACAGGTAAAACTGGGACGCCCTTCCAGGATTCTATTGGGCAATCGCCGTTAGGGCAAANGAAACGGCANGCTTCTGAGCAACCATACGGCTGGNACGCAACCGNACTTGGGAAGTCNATATGGGACAGAACTTTTGGAAAACACCCCGTGGCCAGGTACTTGGGCCACAAAACAGAAGTTTTCCCCAAAACTATTCCTCCGGTAGTATTGGGCATTACCCTTGGAGCCCTTTGGTGGAAGACACNCCTTCCGGCAATTNGCCAATTACTTGGAAAAATTTGGGCNGTGGGCAAGACCTAACCCCACAAAACCGGGTAACACACCCACAAATTATGGCNGGTTTCCAATTATGGGGGCAACCTCAGGACGGCCAGCGGGGAAACCAATTAAACNGGAANTNCCCAATTCTAAACGCCCGGGAANCGAACAGGGGACTTCNCGGTAGGGGGCGCCCACACCCAAGGGAAACACAGGAAATCAAGCGGTCTTACATATCACCNCAAAAGAAATCCTTACCAAAGNGGCGAGAAAATTGGTTCCCCTTTTCCTTTCACACAAAGCCCANATTATAATAT]
[+] EMBL AL696721 [GCAAGAATCGCCAGCCACGGTTTAAATGCCTGCACAATGAAGCAGATCGAGCTCGTTCGGACTTGACCTGACCGGTGAGGAGGATTCGAACGGACAGTACCGGGATTTGATGGGGGGCGTTATCTTCCCAAGCGTAGTGCCGACCGGATTTACGGGCATGCGAGGACCGTACGTTGTCCCTTCAGTGGGTTCAATGGAATGCGGGGCNAGAAAGTCACTCTCACTATTCAACTGGAACAATCAGTGCATCACACGGGGCGGTTCCAACTCTTACCGGGGACAGGTAAAACTGGGACGCCCTTCCAGGATTCTATTGGGCAATCGCCGTTAGGGCAAANGAAACGGCANGCTTCTGAGCAACCATACGGCTGGNACGCAACCGNACTTGGGAAGTCNATATGGGACAGAACTTTTGGAAAACACCCCGTGGCCAGGTACTTGGGCCACAAAACAGAAGTTTTCCCCAAAACTATTCCTCCGGTAGTATTGGGCATTACCCTTGGAGCCCTTTGGTGGAAGACACNCCTTCCGGCAATTNGCCAATTACTTGGAAAAATTTGGGCNGTGGGCAAGACCTAACCCCACAAAACCGGGTAACACACCCACAAATTATGGCNGGTTTCCAATTATGGGGGCAACCTCAGGACGGCCAGCGGGGAAACCAATTAAACNGGAANTNCCCAATTCTAAACGCCCGGGAANCGAACAGGGGACTTCNCGGTAGGGGGCGCCCACACCCAAGGGAAACACAGGAAATCAAGCGGTCTTACATATCACCNCAAAAGAAATCCTTACCAAAGNGGCGAGAAAATTGGTTCCCCTTTTCCTTTCACACAAAGCCCANATTATAATAT]
consensusID : consensus_6333#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 575 fasta sequence
[CCGCGGACGCGTGGGCGAAAACGCATTCAACGATAACGACCTTTCACCATCGCCCACTCCCTCGCCCAGTGACGCGTCCCGGCTGATGGGGGACGGTGCCACGGGTCACGGTGCTGGGGATGGATTAGCACGTGGTCTGTACGGCTGGAGTGGAGCTATGCCTCGATGGCGGCTCAGTCCGGAGCTGCTCGATGGTTTGAGGGCGGCGCTCGAGGTGGAAAACGACCTGTTTATGCCGCACAATGAGCAGATCAAGCTCGGCCGGACGGACCTGACCGGTGAGGAGGATTCGAACGGACAGTACGGGATTGATGGGGGGCGTTATCTTCCCAAGCGTGTGCCGACCGGATTTACGGGCATGCGAGGACGCCGTGTCCCTTCAGGGTTCAATGGAATGCGGGGCAAGAAGTCACTCTCACTATTCAACTGGAACAATCAGGCATCACGGGGCGGTTCCAACTCTTACCGGGACGGTAAACGGGCGCCTTCAGGATTTATGGGAATGCGTGGCAAGAAGGGCTTTGACACATCGCTGGACGAACGATGGAGTTTGGACGACTTGAACACCGGCAGTA]
[+] EMBL BM598730 [CCGCGGACGCGTGGGCGAAAACGCATTCAACGATAACGACCTTTCACCATCGCCCACTCCCTCGCCCAGTGACGCGTCCCGGCTGATGGGGGACGGTGCCACGGGTCACGGTGCTGGGGATGGATTAGCACGTGGTCTGTACGGCTGGAGTGGAGCTATGCCTCGATGGCGGCTCAGTCCGGAGCTGCTCGATGGTTTGAGGGCGGCGCTCGAGGTGGAAAACGACCTGTTTATGCCGCACAATGAGCAGATCAAGCTCGGCCGGACGGACCTGACCGGTGAGGAGGATTCGAACGGACAGTACGGGATTGATGGGGGGCGTTATCTTCCCAAGCGTGTGCCGACCGGATTTACGGGCATGCGAGGACGCCGTGTCCCTTCAGGGTTCAATGGAATGCGGGGCAAGAAGTCACTCTCACTATTCAACTGGAACAATCAGGCATCACGGGGCGGTTCCAACTCTTACCGGGACGGTAAACGGGCGCCTTCAGGATTTATGGGAATGCGTGGCAAGAAGGGCTTTGACACATCGCTGGACGAACGATGGAGTTTGGACGACTTGAACACCGGCAGTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6333#0 CCGGTCGTTAGCGGAGAAAGAGACAGTGCCACAGCGCGTTCATAAGCACGTGTGTTGTGC 60
consensus_6333#2 ------------------------------------------------------------
consensus_6333#1 --------GCAAGAATCGCCAGCCACGGTTTAAATGCCTGCACAATGAAGCAGATCGAGC 52
consensus_6333#0 TGGGTGGG---TGTGCTGAGTTGTGTTTGAATTTCACCCATCACCGGAAAAAGGAAGCGA 117
consensus_6333#2 ------------------------------------------------------------
consensus_6333#1 TCGTTCGGACTTGACCTGACCGGTGAGGAGGATTCG---AACGGACAGTACCGGGATTTG 109
consensus_6333#0 ATAGAAGGAAAAACCGTTAAAAGTGCTGCATGCATTGCACCTTACCCGTGCCGTGCACCA 177
consensus_6333#2 ------------------------------------------------------------
consensus_6333#1 ATGGGGGGCGTTATCTTCCCAAGCGTAGTGCCGACCGGATTTACGGGCATGCGAGGACCG 169
consensus_6333#0 GACCAGCGTCCTATGTTAATATT--TAGTACGTCGGGGTAGGATTTGAGTTGTATTTTTC 235
consensus_6333#2 ------------------------------------------------------------
consensus_6333#1 TACGTTGTCCCTTCAGTGGGTTCAATGGAATGCGGGGCNAGAAAGTCACTCTCACTATTC 229
consensus_6333#0 CGCCTTTGCGGGTACTGTATCGTTCCGTTTTCGACCGGACCTGATCAAGCTTTCACCAGG 295
consensus_6333#2 ------------------------------------------------------------
consensus_6333#1 AACTGGAACAATCAGTGCATCACACGGGGCGGTTCCAACTCTTACCGGGGACAGGTAAAA 289
consensus_6333#0 CACCAGGCGTTCTCCCTTTATTCTTCCATCACAGGAACCCCCACCAACCAACAGCACTAG 355
consensus_6333#2 ------------------------------------------------------------
consensus_6333#1 C-TGGGACGCCCTTCCAGGATTCT---ATTGGGCAATCGCCGTTAGGGCAAANGAAACGG 345
consensus_6333#0 CAATGAGCCGACCCTTTGTACTGCTGGTCCTCG--CGTGCCTAACCAATGTGTGTGTTTC 413
consensus_6333#2 ------------------------------------------------------------
consensus_6333#1 CANGCTTCTGAGCAACCATACGGCTGGNACGCAACCGNACTTGGGAAGTCNATATGGGAC 405
consensus_6333#0 GGAGGTTCCCGGCGATGCTATGCCCCGACCGAGCACCGACGATGATGATAGGCCCAATTA 473
consensus_6333#2 -----------------------------------------------------CCGCGGA 7
consensus_6333#1 AGAACTTTTGGAAAACACC---CCGTGGCCAGGTACT-----------TGGGCCACAAAA 451
* *
consensus_6333#0 CATGGCATTCAACGAAAACGCATTCAACGATAACGACCTTTCACCATCGCCCACTCCCTC 533
consensus_6333#2 CGCG----TGGGCGAAAACGCATTCAACGATAACGACCTTTCACCATCGCCCACTCCCTC 63
consensus_6333#1 CAGAAGTTTTCCCCAAAACTATTCCTCCGGTAGT-ATTGGGCATTACCCTTGGAGCCCTT 510
* * * ***** * * ** ** * ** * * ****
consensus_6333#0 GCCCAGTGACGCGTCCCGGCTGATGGGGGACGGTGCCACGGGTCACGGTGCTGGGGATGG 593
consensus_6333#2 GCCCAGTGACGCGTCCCGGCTGATGGGGGACGGTGCCACGGGTCACGGTGCTGGGGATGG 123
consensus_6333#1 TGGTGG-AAGACACNCCTTCCGGCAATTNGCCA-ATTACTTGGAAAAATTTGGGCNGTGG 568
* * * ** * * * ** * * * ** ***
consensus_6333#0 ATTAGCACGTGGTCTGTACGGCTGGAGTGGAGCTATGCCTCGATGGCGGCTCAGTCCGGA 653
consensus_6333#2 ATTAGCACGTGGTCTGTACGGCTGGAGTGGAGCTATGCCTCGATGGCGGCTCAGTCCGGA 183
consensus_6333#1 GCAAGACCTAACCCCACAAAACCGG-GTAACAC-ACCCACAAATTATGGCNGGTTTCCAA 626
** * * * * ** ** * * * ** *** * * *
consensus_6333#0 GCTGCTCGATGGTTTGAGGGCGGCGCTCGAGGTGGAAAAC-GACCTGTTTATGCCGCACA 712
consensus_6333#2 GCTGCTCGATGGTTTGAGGGCGGCGCTCGAGGTGGAAAAC-GACCTGTTTATGCCGCACA 242
consensus_6333#1 TTATGGGGGCAACCTCAGGACGGCCAGCGGGGAAACCAATTAAACNGGAANTNCCCAATT 686
* * *** **** ** ** ** * * * * ** *
consensus_6333#0 ATGAGCAGATCAAGCTCGGCCGGACGGACCTGACCGGTGAGGAGGATTCGAAC----GGA 768
consensus_6333#2 ATGAGCAGATCAAGCTCGGCCGGACGGACCTGACCGGTGAGGAGGATTCGAAC----GGA 298
consensus_6333#1 CTAAACGCCCGGGAANCGAACAG--GGGACTTCNCGGTAGGGGGCGCCCACACCCAAGGG 744
* * * ** * * ** ** **** ** * * ** **
consensus_6333#0 CAGTACGGGATTGATGGGGGGCGT---TATCTTCCCAAGCGTG-TGCCGACCGGATTTAC 824
consensus_6333#2 CAGTACGGGATTGATGGGGGGCGT---TATCTTCCCAAGCGTG-TGCCGACCGGATTTAC 354
consensus_6333#1 AAACACAGGAAATCAAGCGGTCTTACATATCACCNCAAAAGAAATCCTTACCAAAGNGGC 804
* ** *** * ** * * **** * *** * * * *** * *
consensus_6333#0 GGGCATGCGAGGACGCCGTGTCCCTTCAAGGTTCAATGGAATGCGGGGCAAGAAGTCACT 884
consensus_6333#2 GGGCATGCGAGGACGCCGTGTCCCTTCAGGGTTCAATGGAATGCGGGGCAAGAAGTCACT 414
consensus_6333#1 GAGAAAATTGGTTCCCCTTTTCCTTTCAC------ACAAAGCCCANATTATAATAT---- 854
* * * * * ** * *** **** * * * * * *
consensus_6333#0 CTCACTATTCAACTGGAACAATCAGGCATCACGGGGG----------------------- 921
consensus_6333#2 CTCACTATTCAACTGGAACAATCAGGCATCACGGGGCGGTTCCAACTCTTACCGGGACGG 474
consensus_6333#1 ------------------------------------------------------------
consensus_6333#0 ------------------------------------------------------------
consensus_6333#2 TAAACGGGCGCCTTCAGGATTTATGGGAATGCGTGGCAAGAAGGGCTTTGACACATCGCT 534
consensus_6333#1 ------------------------------------------------------------
consensus_6333#0 -----------------------------------------
consensus_6333#2 GGACGAACGATGGAGTTTGGACGACTTGAACACCGGCAGTA 575
consensus_6333#1 -----------------------------------------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||