cluster # 6339

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 6339 cluster # 6339 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6339#0 length = 821 sequences # 2

consensus_6339#1 length = 820 sequences # 2
consensus_6339#2 length = 481 sequences # 1

consensusID : consensus_6339#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 821
fasta sequence

                              [CCGCCCACGCGTCCGAAAGAAATGCTGAGATGCGAAGAGAAAAACGCTTCCACAATTTACCACAAAACGAAACACGCGTCGGAGCAGAAAACAGATAAGTAAACATCAATCCCTTCTTACAACTTTATTCCATTTTTCCGCGATACGCTTTCGAGAAGTCAAGTCCTCCCCAACACGTTTGGCCCTTGGCTACAAACACTAGAAATTTTGCACCCTTTTTAAAGAACAGCACCACATACCACATGCTAATTTCAGTTTTTAACAAAAGCCGAAATTATAGATTAAGACACACATACACACAAAAACAAGAAAAACAAAACAACAAACCGACGACAACTGTCCCTAAAACACGATCGCGATTGAAATGAATATACATAGGATTAAATCAAAGAATTAGGGGAGTCAAACGGGATAAGAGAGAAAAATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATATATTTAAGGATGCTTTAGCAAAGATTAAGCGTTTTTCGTGTGTCTCTCCATACTTGGGGAGCTTACCGAAAAGGTTATATTTTTACAAACGCACTCCAATTCGTTTCTATTTCGGTTCTAAAATATGTTTTTTTTTTTTGCATTACAACGCCGTCGTAATGTATGGGTGAACTGAACAGTTCAAATTGCCTTGCATTGGTAGCGATCGTTCTATTAAAAAAAAAAAAAACAGGATTTTTGCGGGCCACCACCTTTCCACAGCCCTGCGTATGAGGGGGCGGCTTGGTCCCCTTTCTAGATTTGATCCCATGGCGGGCTTGCTGCAGAGTCGCGTACGTACAGCTCGACGACTGT]

[+] EMBL BM636927             [CCGCCCACGCGTCCGAAAGAAATGCTGAGATGCGAAGAGAAAAACGCTTCCACAATTTACCACAAAACGAAACACGCGTCGGAGCAGAAAACAGATAAGTAAACATCAATCCCTTCTTACAACTTTATTCCATTTTTCCGCGATACGCTTTCGAGAAGTCAAGTCCTCCCCAACACGTTTGGCCCTTGGCTACAAACACTAGAAATTTTGCACCCTTTTTAAAGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL BM578906             [                                                                                                                                                                                    ccgCCTTGGCTACAAACACTAGAAATTTTGCACCCTTTTTAAAGAACAGCACCACATACCACATGCTAATTTCAGTTTTTAACAAAAGCCGAAATTATAGATTAAGACACACATACACACAAAAACAAGAAAAACAAAACAACAAACCGACGACAACTGTCCCTAAAACACGATCGCGATTGAAATGAATATACATAGGATTAAATCAAAGAATTAGGGGAGTCAAACGGGATAAGAGAGAAAAATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATATATTTAAGGATGCTTTAGCAAAGATTAAGCGTTTTTCGTGTGTCTCTCCATACTTGGGGAGCTTACCGAAAAGGTTATATTTTTACAAACGCACTCCAATTCGTTTCTATTTCGGTTCTAAAATATGTTTTTTTTTTTTGCATTACAACGCCGTCGTAATGTATGGGTGAACTGAACAGTTCAAATTGCCTTGCATTGGTAGCGATCGTTCTATTAAAAAAAAAAAAAACAGGATTTTTGCGGGCCACCACCTTTCCACAGCCCTGCGTATGAGGGGGCGGCTTGGTCCCCTTTCTAGATTTGATCCCATGGCGGGCTTGCTGCAGAGTCGCGTACGTACAGCTCGACGACTGT]




>consensus_6339#0
CCGCCCACGCGTCCGAAAGAAATGCTGAGATGCGAAGAGAAAAACGCTTCCACAATTTAC
CACAAAACGAAACACGCGTCGGAGCAGAAAACAGATAAGTAAACATCAATCCCTTCTTAC
AACTTTATTCCATTTTTCCGCGATACGCTTTCGAGAAGTCAAGTCCTCCCCAACACGTTT
GGCCCTTGGCTACAAACACTAGAAATTTTGCACCCTTTTTAAAGAACAGCACCACATACC
ACATGCTAATTTCAGTTTTTAACAAAAGCCGAAATTATAGATTAAGACACACATACACAC
AAAAACAAGAAAAACAAAACAACAAACCGACGACAACTGTCCCTAAAACACGATCGCGAT
TGAAATGAATATACATAGGATTAAATCAAAGAATTAGGGGAGTCAAACGGGATAAGAGAG
AAAAATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATATATTTAAGGATGC
TTTAGCAAAGATTAAGCGTTTTTCGTGTGTCTCTCCATACTTGGGGAGCTTACCGAAAAG
GTTATATTTTTACAAACGCACTCCAATTCGTTTCTATTTCGGTTCTAAAATATGTTTTTT
TTTTTTGCATTACAACGCCGTCGTAATGTATGGGTGAACTGAACAGTTCAAATTGCCTTG
CATTGGTAGCGATCGTTCTATTAAAAAAAAAAAAAACAGGATTTTTGCGGGCCACCACCT
TTCCACAGCCCTGCGTATGAGGGGGCGGCTTGGTCCCCTTTCTAGATTTGATCCCATGGC
GGGCTTGCTGCAGAGTCGCGTACGTACAGCTCGACGACTGT

consensusID : consensus_6339#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 820
fasta sequence

                              [GGCCACCGATCCGCACCACGACCATGATGAACCAACCGTGCTAGAGCCTCATCATCCCAACCATCCTCATCATCATCATCATCATCATACTACGGAACCGAATAGCCATCATCATCATCATGCACAGCTGCACCATCATCATGCCCATCATCAGCATCATCCCGAGCAGCAGCAGCAGCAGCACGAAAAGATGGAGGAGCATCATGACGATGAGGAGGTGGTGGTCGAGCAGCACCCGAAGACGACGACGATGGAAGATAAAACTTAACTCCAAAAGCTACTCCAACGGGGTAAGAAGAGGGGTCAGTCGCTGCAACAGCTGCATGCACGATACACAAACA-CA--CCCCCACACCCACACCTTAACAAAGAAATGCTGAGATGCGAAGAGAAAAACGCTTCCACAATTTACCACAAAACGAAACACGCGTCGGAGCAGAAAACAGATAAGTAAACATCAATCCCTTCTTACAACTTTATTCCATTTTTCCGCGATACGCTTTCGAGAAGTCAAGTCCTCCCCAACACGTTTGGCCCTTGGCTACAAACACTAGAAATTTTGCACCCTTTTTAAAGAACAGCACCACTCACCCGGTGCTAATTTCAGTTTTTAACAAAAGCCGAAATTATAGATTAAGACACACATACACACAAAAACAAGAAAAACAAAACAACAAACCGACGACAACTGTCCCTAAAACACGATCGCGATTGAAATGAATATACATAGGATTAAATCAAAGAATTAGGGGAGTCAAACGGGATAAGAGAGAAAAATAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGCGAGAGAGAGCGG]

[-] EMBL BM654207             [GGCCACCGATCCGCACCACGACCATGATGAACCAACCGTGCTAGAGCCTCATCATCCCAACCATCCTCATCATCATCATCATCATCATACTACGGAACCGAATAGCCATCATCATCATCATGCACAGCTGCACCATCATCATGCCCATCATCAGCATCATCCCGAGCAGCAGCAGCAGCAGCACGAAAAGATGGAGGAGCATCATGACGATGAGGAGGTGGTGGTCGAGCAGCACCCGAAGACGACGACGATGGAAGATAAAACTTAACTCCAAAAGCTACTCCAACGGGGTAAGAAGAGGGGTCAGTCGCTGCAACAGCTGCATGCACGATACACAAACA CA  CCCCCACACCCACACCTTAACAAAGAAATGCTGAGATGCGAAGAGAAAAACGCTTCCACAATTTACCACAAAACGAAACACGCGTCGGAGCAGAAAACAGATAAGTAAACATCAATCCCTTCTTACAACTTTATTCCATTTTTCCGCGATACGCTTTCGAGAAGTCAAGTCCTCCCCAACACGTTTGGCCCTTGGCTACAAACACTAGAAATTTTGCACCCTTTTTAAAGAACAGCACCACTCACCCGG                                                                                                                                                                                                                                    ]
[-] EMBL BM580453             [                                                                                                                                                                                                          CATGACGATGAGGAGGTGGTGGTCGAGCAGCACCCGAAGACGACGACGATGGAAGATAAAACTTAACTCCAAAAGCTACTCCAACGGGGTAAGAAGAGGGGTCAGTCGCTGCAACAGCTGCATGCACGATACACAAACACCACCCCCCCACACCCACACCTTAACAAAGAAATGCTGAGATGCGAAGAGAAAAACGCTTCCACAATTTACCACAAAACGAAACACGCGTCGGAGCAGAAAACAGATAAGTAAACATCAATCCCTTCTTACAACTTTATTCCATTTTTCCGCGATACGCTTTCGAGAAGTCAAGTCCTCCCCAACACGTTTGGCCCTTGGCTACAAACACTAGAAATTTTGCACCCTTTTTAAAGAACAGCACCACATACCACATGCTAATTTCAGTTTTTAACAAAAGCCGAAATTATAGATTAAGACACACATACACACAAAAACAAGAAAAACAAAACAACAAACCGACGACAACTGTCCCTAAAACACGATCGCGATTGAAATGAATATACATAGGATTAAATCAAAGAATTAGGGGAGTCAAACGGGATAAGAGAGAAAAATAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGCGAGAGAGAGCGG]




>consensus_6339#1
GGCCACCGATCCGCACCACGACCATGATGAACCAACCGTGCTAGAGCCTCATCATCCCAA
CCATCCTCATCATCATCATCATCATCATACTACGGAACCGAATAGCCATCATCATCATCA
TGCACAGCTGCACCATCATCATGCCCATCATCAGCATCATCCCGAGCAGCAGCAGCAGCA
GCACGAAAAGATGGAGGAGCATCATGACGATGAGGAGGTGGTGGTCGAGCAGCACCCGAA
GACGACGACGATGGAAGATAAAACTTAACTCCAAAAGCTACTCCAACGGGGTAAGAAGAG
GGGTCAGTCGCTGCAACAGCTGCATGCACGATACACAAACACACCCCCACACCCACACCT
TAACAAAGAAATGCTGAGATGCGAAGAGAAAAACGCTTCCACAATTTACCACAAAACGAA
ACACGCGTCGGAGCAGAAAACAGATAAGTAAACATCAATCCCTTCTTACAACTTTATTCC
ATTTTTCCGCGATACGCTTTCGAGAAGTCAAGTCCTCCCCAACACGTTTGGCCCTTGGCT
ACAAACACTAGAAATTTTGCACCCTTTTTAAAGAACAGCACCACTCACCCGGTGCTAATT
TCAGTTTTTAACAAAAGCCGAAATTATAGATTAAGACACACATACACACAAAAACAAGAA
AAACAAAACAACAAACCGACGACAACTGTCCCTAAAACACGATCGCGATTGAAATGAATA
TACATAGGATTAAATCAAAGAATTAGGGGAGTCAAACGGGATAAGAGAGAAAAATAGAGA
GAGAGAGAGAGAGAGAGAGAGAAAGAGCGAGAGAGAGCGG

consensusID : consensus_6339#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 481
fasta sequence

                              [GACCCACGCGTCCGGATGAACCAGCCGTGCTAGAGCCTCATCATCCCAACCATCCTCATCATCATCATCATCATCATACTACGGAACCGAATAGCCATCATCATCATCATGCACAGCTGCACCATCATCATGCCCATCATCAGCATCATCCCGAGCAGCAGCAGCAGCAGCAGCACGAAAAGATGGAGGAGCATCATGACGATGAGGAGGTGGTGGTCGAGCAGCACCCGAAGACGACGACGATGGAAGATAAAACTTAACTCCAAAAGCTACTCCAACGGGGTAAGAAGAGGGGTCAGTCGCTGCAACAGCTGCATGCACGATACACAAACACACCCCCACACCCACACCTTAACAAAGAAATGCTGCGATGCGAAGAGAAAAACGCTTCCACAATTTACCACAAAACGAAACACGCGTCGGAGCAGAAAACAGATAAGTAAACATCAATCCCTTCTTACAACTTTATTCCATTTTTCCG]

[+] EMBL BM627914             [GACCCACGCGTCCGGATGAACCAGCCGTGCTAGAGCCTCATCATCCCAACCATCCTCATCATCATCATCATCATCATACTACGGAACCGAATAGCCATCATCATCATCATGCACAGCTGCACCATCATCATGCCCATCATCAGCATCATCCCGAGCAGCAGCAGCAGCAGCAGCACGAAAAGATGGAGGAGCATCATGACGATGAGGAGGTGGTGGTCGAGCAGCACCCGAAGACGACGACGATGGAAGATAAAACTTAACTCCAAAAGCTACTCCAACGGGGTAAGAAGAGGGGTCAGTCGCTGCAACAGCTGCATGCACGATACACAAACACACCCCCACACCCACACCTTAACAAAGAAATGCTGCGATGCGAAGAGAAAAACGCTTCCACAATTTACCACAAAACGAAACACGCGTCGGAGCAGAAAACAGATAAGTAAACATCAATCCCTTCTTACAACTTTATTCCATTTTTCCG]




>consensus_6339#2
GACCCACGCGTCCGGATGAACCAGCCGTGCTAGAGCCTCATCATCCCAACCATCCTCATC
ATCATCATCATCATCATACTACGGAACCGAATAGCCATCATCATCATCATGCACAGCTGC
ACCATCATCATGCCCATCATCAGCATCATCCCGAGCAGCAGCAGCAGCAGCAGCACGAAA
AGATGGAGGAGCATCATGACGATGAGGAGGTGGTGGTCGAGCAGCACCCGAAGACGACGA
CGATGGAAGATAAAACTTAACTCCAAAAGCTACTCCAACGGGGTAAGAAGAGGGGTCAGT
CGCTGCAACAGCTGCATGCACGATACACAAACACACCCCCACACCCACACCTTAACAAAG
AAATGCTGCGATGCGAAGAGAAAAACGCTTCCACAATTTACCACAAAACGAAACACGCGT
CGGAGCAGAAAACAGATAAGTAAACATCAATCCCTTCTTACAACTTTATTCCATTTTTCC
G

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6339#1      ------------------------------------------------------------
consensus_6339#2      ------------------------------------------------------------
consensus_6339#0      CCGCCCACGCGTCCGAAAGAAATGCTGAGATGCGAAGAGAAAAACGCTTCCACAATTTAC 60
                                                                                  

consensus_6339#1      ----------------------------------------GGCCACCGATCCGCACCACG 20
consensus_6339#2      -----------------------------------------------GACCCACGC---- 9
consensus_6339#0      CACAAAACGAAACACGCGTCGGAGCAGAAAACAGATAAGTAAACATCAATCCCTTCTTAC 120
                                                                      * **   *    

consensus_6339#1      ACCATGATG--AACCAACCGTGCTAGAGCCTCATCATCCCAACCATCCTCATCATCATCA 78
consensus_6339#2      GTCCGGATG--AACCAGCCGTGCTAGAGCCTCATCATCCCAACCATCCTCATCATCATCA 67
consensus_6339#0      AACTTTATTCCATTTTTCCGCGATACGCTTTCGAGAAGTCAA--GTCCTCCCCAACACGT 178
                        *   **   *     *** * **     **   *   ***   *****  ** **   

consensus_6339#1      TCATCATCATACTACGGA-ACCGAATAGCCATCATCATCATCAT-GCACAGCTGCAC--- 133
consensus_6339#2      TCATCATCATACTACGGA-ACCGAATAGCCATCATCATCATCAT-GCACAGCTGCAC--- 122
consensus_6339#0      TTGGCCCTTGGCTACAAACACTAGAAATTTTGCACCCTTTTTAAAGAACAGCACCACATA 238
                      *   *      ****  * **   * *     ** * *  * *  * *****  ***   

consensus_6339#1      ---CATCATCATGCCCATCATCAGCATCATCCCGAGCAGCAGCAGCAGCAGCA----CGA 186
consensus_6339#2      ---CATCATCATGCCCATCATCAGCATCATCCCGAGCAGCAGCAGCAGCAGCAG-CACGA 178
consensus_6339#0      CCACATGCTAATTTCAGTTTTTAACAAAAGCCGAAATTATAGATTAAGACACACATACAC 298
                         ***  * **  *  *  * * **  * **  *     **    **   **    *  

consensus_6339#1      AAAGATGGAGGAGCATCATGACGATGAGGAGGTGGTGGTCGAGC--AGCACCCGAAGACG 244
consensus_6339#2      AAAGATGGAGGAGCATCATGACGATGAGGAGGTGGTGGTCGAGC--AGCACCCGAAGACG 236
consensus_6339#0      ACAAAAACAAGAAAAACAAAACAACAAACCGACGACAACTGTCCCTAAAACACGATCGCG 358
                      * * *   * **  * **  ** *  *   *  *      *  *  *  ** ***   **

consensus_6339#1      ACGACGATGGA-AGATA-AAACTTAACTCCAAAAGCTAC-----TCCAACGGGGTAAGAA 297
consensus_6339#2      ACGACGATGGA-AGATA-AAACTTAACTCCAAAAGCTAC-----TCCAACGGGGTAAGAA 289
consensus_6339#0      ATTGAAATGAATATACATAGGATTAAATCAAAGAATTAGGGGAGTCAAACGGGATAAGAG 418
                      *     *** * * * * *   **** ** ** *  **      ** ****** ***** 

consensus_6339#1      GAGGGGTCAGTCGCTGCAACAGCTGCATGCAC-GATACACAAACACACCCCCACACCCAC 356
consensus_6339#2      GAGGGGTCAGTCGCTGCAACAGCTGCATGCAC-GATACACAAACACACCCCCACACCCAC 348
consensus_6339#0      AGAAAAATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATATATTTAAGGAT 478
                              **     *  * **    *   *  ** * * * * * *       *   * 

consensus_6339#1      ACCTTAACAAAGA--AATGCTGAGATGCGAAGAGAAAAACGCTTCCACAATTTACCACAA 414
consensus_6339#2      ACCTTAACAAAGA--AATGCTGCGATGCGAAGAGAAAAACGCTTCCACAATTTACCACAA 406
consensus_6339#0      GCTTTAGCAAAGATTAAGCGTTTTTCGTGTGTCTCTCCATACTTGGGGAGCTTACCG-AA 537
                       * *** ******  **   *     * *         *  ***    *  *****  **

consensus_6339#1      AACGAAACACGCGTCGGAGCAGAAAACAGATAAGTAAACATCAATCCCTTCTTACAACTT 474
consensus_6339#2      AACGAAACACGCGTCGGAGCAGAAAACAGATAAGTAAACATCAATCCCTTCTTACAACTT 466
consensus_6339#0      AAGGTTATATTTTTACAAAC-----GCACTCCAATTCGTTTCTATTTCGGTTCTAAAATA 592
                      ** *  * *    *   * *      **    * *     ** **  *   *   ** * 

consensus_6339#1      TATTCCATTTTTCCGCGATACGCTTTCGAGAAGTCAAGTCCTCCCCAACACGTTTGGCCC 534
consensus_6339#2      TATTCCATTTTTCCG--------------------------------------------- 481
consensus_6339#0      TGTTTTTTTTTTTTGCATTACAACGCCGTCGTAATGTATGGGTGAACTGAACAGTTCAAA 652
                      * **   *****  *                                             

consensus_6339#1      TTGGCTACAAACACTAGAAATTTTGCACCCTTTTTAAAGAACAGCACCACTCACCCGGTG 594
consensus_6339#2      ------------------------------------------------------------
consensus_6339#0      TTGCCTTGCATTGGTAGCGATCGTTCTATTAAAAAAAAAAAAAACAGGATTTTTGCGGGC 712
                                                                                  

consensus_6339#1      CTAATTTCAGTTTTTAACAAAAGCCGAAATTATAGATTAAGACACACATACACACAAAAA 654
consensus_6339#2      ------------------------------------------------------------
consensus_6339#0      CACCACCTTTCCACAGCCCTGCGTATGAGGGGGCGGCTTGGTCCCCTTTCTAGATTTGAT 772
                                                                                  

consensus_6339#1      CAAGAAAAACAAAACAACAAACCGACGACAACTGTCCCTAAAACACGATCGCGATTGAAA 714
consensus_6339#2      ------------------------------------------------------------
consensus_6339#0      CCCATGGCGGGCTTGCTGCAGAGTCGCGTACGTACAGCTCGACGACTGT----------- 821
                                                                                  

consensus_6339#1      TGAATATACATAGGATTAAATCAAAGAATTAGGGGAGTCAAACGGGATAAGAGAGAAAAA 774
consensus_6339#2      ------------------------------------------------------------
consensus_6339#0      ------------------------------------------------------------
                                                                                  

consensus_6339#1      TAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGCGAGAGAGAGCGG 820
consensus_6339#2      ----------------------------------------------
consensus_6339#0      ----------------------------------------------