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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6347#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1175 fasta sequence
[GGCAGAATCCCCCCGCGGTTTTACGCTCTTGTTCGGATAACACGAGAAAAACGCTCTGTATTACGGTTTCAAATTATCAAAACGAGGATTTTCGTGTTTTTACGAAACCGCATTGGTTTTCTTTAGTAAGTGCCCAAGTGAATCAAACAGAAAGATTAATCCAAACCACCTGTAGCGCCCTGAACTGTGACACTGCTACAGCCCGATAGCTGGATGACAACCAACACCAATAATATCTTGCTCAGCAGCTGTTATATCNGTATGGCAAACAGCAATTTCCGCAGATGATANATATACTATANATAATAGTTATAAAGATCACGTAGACACAAAGTNNTGTATCAAAAGGGTTAGAGCNTTAAAAGCATANAAAGTATCCTTATAAACAGCCTAGTATAACCTATTACACCGTACGCAAATGCTTGAGGANGAAAGCGAACTTGTTCAANTTGGAGCAATTGGGTNTATCCTCCAAGATGGCCACACGACAAAAGGCAACTATTTGCCCTTGCGCATGTGGCTTGGCGGACAAACAAAATATGAAAAGGAGCGCCCCGAGTTAACGGAAGTTACACTTGGGCACAACCCTATATGGACCGGCGGCAGCGGTTCCGCAGCAACACCGGCCGCACACCAANGCGACAGGACACACACAGACAGGGTTCCGCACNCCAAGAGCCGGGCCGGCCCAATTTTAATATGGAANTTGAGGNGGAGAATCCGGGAAAGCAAANACTTGGACGAGGANTATAAGGANCGGAATTAGGAACGNGCAGCCCAAACAACGGCCCAACACGGGGNGCCCTCTAGGGCGGCCACACCTTCACGGACAGTTCANTACCAGGAAAGACCCCCCNGGCTAAACCANNAATTGGGTANGGAANCGGGCACCAATCCAATAAACACTGCGAGATTGGTATANGCCANNTGGTNAGGGCACCATTGGNGCAAAGGCCCCACACAAANCTCGCGGCAAGGANCGTAANACCCAAACAANCNGNGNGCGAGAANNTTATTANCANCACCCATACTTGNGATNCCGGCCTTGGTTTANGTTTCAANACCCANGACAGGCCGCCGGCGAACACACGGNTGGGTCCCGGGTGGCCACATGANGGATATACCAGAAATAGGGGAGCCCACAGCACACACACACTTANCANTAGANTGGCGCC]
[+] EMBL AL692549 [GGCAGAATCCCCCCGCGGTTTTACGCTCTTGTTCGGATAACACGAGAAAAACGCTCTGTATTACGGTTTCAAATTATCAAAACGAGGATTTTCGTGTTTTTACGAAACCGCATTGGTTTTCTTTAGTAAGTGCCCAAGTGAATCAAACAGAAAGATTAATCCAAACCACCTGTAGCGCCCTGAACTGTGACACTGCTACAGCCCGATAGCTGGATGACAACCAACACCAATAATATCTTGCTCAGCAGCTGTTATATCNGTATGGCAAACAGCAATTTCCGCAGATGATANATATACTATANATAATAGTTATAAAGATCACGTAGACACAAAGTNNTGTATCAAAAGGGTTAGAGCNTTAAAAGCATANAAAGTATCCTTATAAACAGCCTAGTATAACCTATTACACCGTACGCAAATGCTTGAGGANGAAAGCGAACTTGTTCAANTTGGAGCAATTGGGTNTATCCTCCAAGATGGCCACACGACAAAAGGCAACTATTTGCCCTTGCGCATGTGGCTTGGCGGACAAACAAAATATGAAAAGGAGCGCCCCGAGTTAACGGAAGTTACACTTGGGCACAACCCTATATGGACCGGCGGCAGCGGTTCCGCAGCAACACCGGCCGCACACCAANGCGACAGGACACACACAGACAGGGTTCCGCACNCCAAGAGCCGGGCCGGCCCAATTTTAATATGGAANTTGAGGNGGAGAATCCGGGAAAGCAAANACTTGGACGAGGANTATAAGGANCGGAATTAGGAACGNGCAGCCCAAACAACGGCCCAACACGGGGNGCCCTCTAGGGCGGCCACACCTTCACGGACAGTTCANTACCAGGAAAGACCCCCCNGGCTAAACCANNAATTGGGTANGGAANCGGGCACCAATCCAATAAACACTGCGAGATTGGTATANGCCANNTGGTNAGGGCACCATTGGNGCAAAGGCCCCACACAAANCTCGCGGCAAGGANCGTAANACCCAAACAANCNGNGNGCGAGAANNTTATTANCANCACCCATACTTGNGATNCCGGCCTTGGTTTANGTTTCAANACCCANGACAGGCCGCCGGCGAACACACGGNTGGGTCCCGGGTGGCCACATGANGGATATACCAGAAATAGGGGAGCCCACAGCACACACACACTTANCANTAGANTGGCGCC]
consensusID : consensus_6347#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 861 fasta sequence
[GGCAAGAATCGGCACGAGGTGCCTGTTTTTTTTTTGCAAACTTGCTTACGCTCTTGTTCGGATAACAGAGAAAAACGCTCTGTATTACGGTTTCAAATTATCAAAACGAGGATTTTCGTGTTTTTACGAAACCGCATTGGTTTTCTTTAGTAAGGCCCAAGTGAATCAAACAGAAAGATTAATCCAAACCACCTGTAGCGCCCTGAAC------GTGACACGCACGCCCGATAGCGGATGACAACAACACAATAATTCTTGCTAGCAGCTGTTTTCGTTGGCAAAGAATTTCCGCAGTGATTTTTACTTTTTTAGTTATAAGATCACGTAGCAAAAGTATGTTAAGGTGGCTAGCATTAGTTCTTACGCTGTTACTTTCCGTCCAAGCTGGAGAAGACTGGAATGGAGCATGGTTTCCCAACGCACCGAAAGCACTTGCCCTGGAGGCTGGCGAAACAATGAAGCCCGTCGATAATGCACTTGCGGAGGTCGACACCGCC-AAAGAGAAAAAGTCCCCAGCGCGCATTATGATGGGAATCGAGAATGCGGATTGTGATGACGCAAAGCACGGTCTGGCAATAGATTTCGACCCGTACAATGTGACGCACTCTACGGTGTACATGTGCCTGGAGCCAAAGGCAGACTACAAGGGCGATTACAATATGGACGCTGTTATCACCGAGCGCAATGTGCCGGCTGCGTACGTGGCCAACCATAAGTGCATGAACAGNACCATAGAATATGCGGAAAGGATTCCTTCCTATGGAACGCATCGTCCGCTCTGGTCGAGGTATGGGGAGTACCGATACGTTCCTCCGCAGCGATGGCTGCACAACANCGAGCATGGCGCANTAATTGCTCTCTATC]
[+] EMBL BX469858 [GGCAAGAATCGGCACGAGGTGCCTGTTTTTTTTTTGCAAACTTGCTTACGCTCTTGTTCGGATAACAGAGAAAAACGCTCTGTATTACGGTTTCAAATTATCAAAACGAGGATTTTCGTGTTTTTACGAAACCGCATTGGTTTTCTTTAGTAAGGCCCAAGTGAATCAAACAGAAAGATTAATCCAAACCACCTGTAGCGCCCTGAAC GTGACACGCACGCCCGATAGCGGATGACAACAACACAATAATTCTTGCTAGCAGCTGTTTTCGTTGGCAAAGAATTTCCGCAGTGATTTTTACTTTTTTAGTTATAAGATCACGTAGCAAAAGTATGTTAAGGTGGCTAGCATTAGTTCTTACGCTGTTACTTTCCGTCCAAGCTGGAGAAGACTGGAATGGAGCATGGTTTCCCAACGCACCGAAAGCACTTGCCCTGGAGGCTGGCGAAACAATGAAGCCCGTCGATAATGCACTTGCGGAGGTCGACACCGCCGAAAGAGAAAAAGTCCCCAGCGCGCATTATGATGGGAATCGAGAATGCGGATTGTGAT ]
[+] EMBL BM652237 [ ccgaTTGCTTACGCTCTTGTTCGGATAACAGAGAAAAACGCTCTGTATTACGGTTTCAAATTATCAAAACGAGGATTTTCGTGTTTTTACGAAACCGCATTGGTTTTCTTTAGTAAGGCCCAAGTGAATCAAAGAGAAAGATCAATCCAAACCACCTGTAGCGCCCTGAACGTTTTGGTGACACGCACGCCCGATAGCGGATGACAACAACACAATAATTCTTGCTAGCAGCTGTTTTCGTTGGCAAAGAATTTCCGCAGTGATTTTTACTTTTTTAGTTATAAGATCACGTAGCAAAAGTATGTTAAGGTGGCTAGCATTAGTTCTTACGCTGTTACTTTCCGTCCAAGCAGGAGAAGACTGGAATGGAGCATGGTTTCCCAACGCACCGAAAGCACTTGCCCTGGAGGCTGGCGAAACAATGAAACCCGTCGATAATGCACTCCCGGCGGTCGACACCGCC AAAGAGAAAAAGTCCCCAACGCGCATTATGATGGGAATCGAAAATGCGGATTGTGATGACGCAAAGCACGGTCTGGCAATAGATTTTGACCCGTATAATGTGACGCACTCTACGGTGTACATGTGCCTGGAGCCAAAGGCAGACTACAAGGGCGATTACAATATGGACGCTGTTATCACCGAGCACAATGTGCCGGCTGCGTACGTGGCC ]
[+] EMBL BX608933 [ ACAGAGAAAAACGCTCTGTATTACGGTTTCAAATTATCAAAACGAGGATTTTCGTGTTTTTACGAAACCGCATTGGTTTTCTTTAGTAAGGCCCAAGTGAATCAAACAGAAAGATTAATCCAAACCACCTGTAGCGCCCTGAAC GTGACACGCACGCCCGATAGCGGATGACAACAACACAATAATTCTTGCTAGCAGCTGTTTTCGTTGGCAAAGAATTTCCGCAGTGATTTTTACTTTTTTAGTTATAAGATCACGTAGCAAAAGTATGTTAAGGTGGCTAGCATTAGTTCTTACGCTGTTACTTTCCGTCCAAGCTGGAGAAGACTGGAATGGAGCATGGTTTCCCAACGCACCGAAAGCACTTGCCCTGGAGGCTGGCGAAACAATGAAGCCCGTCGATAATGCACTTGCGGAGGTCGACACCGCC AAAGAGAAAAAGTCCCCAGCGCGCATTATGATGGGAATCGAGAATGCGGATTGTGATGACGCAAAGCACGGTCTGGCAATAGATTTCGACCCGTACAATGTGACGCACTCTACGGTGTACATGTGCCTGGAGCCAAAGGCAGACTACAAGGGCGATTACAATATGGACGCTGTTATCACCGAGCGCAATGTGCCGGCTGCGTACGTGGCCAACCATAAGTGCAT ]
[+] EMBL BX625552 [ ATGACGCAAAGCACGGTCTGGCAATAGATTTCGACCCGTACAATGTGACGCACTCTACGGTGTACATGTGCCTGGAGCCAAAGGCAGACTACAAGGGCGATTACAATATGGACGCTGTTATCACCGAGCGCAATGTGCCGGCTGCNTACGTGGCCAACCATAAGTGCATGAACAGNACCATAGAATATGCGGAAAGGATTCCTTCCTATGGAACGCATCGTCCGCTCTGGTCGAGGTATGGGGAGTACCGATACGTTCCTCCGCAGCGATGGCTGCACAACANCGAGCATGGCGCANTAATTGCTCTCTATC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6347#0 -----------------------GGCAGAATCCCCCCGCGGTT--TTACGCTCTTGTTCG 35
consensus_6347#1 GGCAAGAATCGGCACGAGGTGCCTGTTTTTTTTTTGCAAACTTGCTTACGCTCTTGTTCG 60
* * * ** ***************
consensus_6347#0 GATAACACGAGAAAAACGCTCTGTATTACGGTTTCAAATTATCAAAACGAGGATTTTCGT 95
consensus_6347#1 GATAACA-GAGAAAAACGCTCTGTATTACGGTTTCAAATTATCAAAACGAGGATTTTCGT 119
******* ****************************************************
consensus_6347#0 GTTTTTACGAAACCGCATTGGTTTTCTTTAGTAAGTGCCCAAGTGAATCAAACAGAAAGA 155
consensus_6347#1 GTTTTTACGAAACCGCATTGGTTTTCTTTAGTAAG-GCCCAAGTGAATCAAACAGAAAGA 178
*********************************** ************************
consensus_6347#0 TTAATCCAAACCACCTGTAGCGCCCTGAACTGTGACACTGCTACAGCCCGATAGCTGGAT 215
consensus_6347#1 TTAATCCAAACCACCTGTAGCGCCCTGAAC-GTGACAC--GCAC-GCCCGATAGC-GGAT 233
****************************** ******* ** ********** ****
consensus_6347#0 GACAACCAACACCAATAATATCTTGCTCAGCAGCTGTTATATCNGTATGGCAAACAGCAA 275
consensus_6347#1 GACAAC-AACAC-AATAAT-TCTTGCT-AGCAGCTGTT---TTCGT-TGGCAAAGA---A 282
****** ***** ****** ******* ********** * ** ******* * *
consensus_6347#0 TTTCCGCAGATGATANATATACTATANATAATAGTTATAAAGATCACGTAGACACAAAGT 335
consensus_6347#1 TTTCCGCAG-TGATTTTTACTTTTT------TAGTTATAA-GATCACGTAG---CAAA-- 329
********* **** ** * * ********* ********** ****
consensus_6347#0 NNTGTATCAAAAGGGTTAGAGCNTTAAAAGCATANAAAGTATCCTTATAAACAGCCTAGT 395
consensus_6347#1 AGTATGTTAAGGTGGCTAG--CATTAGTT-CTTACGCTGTTACTTTCCGTCCAAGCTGGA 386
* * * ** ** *** * *** * ** ** * ** ** ** *
consensus_6347#0 ATAACCTATTACACCGTACGCAAATGCTTGAGGANGAAAGCGAACTTGTTCAANTTGGAG 455
consensus_6347#1 GAAGACT------------------------GGAATGGAGCATGGTTTCCCAAC--GCAC 420
* ** *** *** ** *** * *
consensus_6347#0 CAATTGGGTNTATCCTCCAAGATGGCCACACGACAAAAGGCAACTATT-TGCCCTTGCGC 514
consensus_6347#1 CGAAAGCACTTGCCCTGGAGGCTGGCGAAACAATGAAGCCCGTCGATAATGCACTTGCGG 480
* * * * *** * * **** * ** * ** * * ** *** ******
consensus_6347#0 ATGTGGCTTGGCGGACAAACAAAATATGAAAAGGAGCGCCCCGAGTTAACGGAAGTTACA 574
consensus_6347#1 AGGTCGAC------ACCGCCAAA----GAGAAAAAGTCCCCAGCGCGCATTATGATGGGA 530
* ** * ** **** ** ** ** *** * * * * *
consensus_6347#0 CTTGGGCACA-ACCCTATATGGACCGGCGGCAGCGGTTCCGCAGCAACACCGGCCGCACA 633
consensus_6347#1 ATCGAGAATGCGGATTGTGATGACGCAAAGCA-CGGTCTGGCAATAGATTTCGACCCGTA 589
* * * * * * *** *** **** *** * * * * *
consensus_6347#0 CCAANGCGACAGGACACACACAGACAGGGTTCCGCACNCCAAGAGCCGG--GCCGGCCCA 691
consensus_6347#1 C-AATGTGACGCACTCTACGGTGTACATGTGCCTGGAGCCAAAGGCAGACTACAAGGGCG 648
* ** * *** ** * ** ** **** ** * * * *
consensus_6347#0 ATTTTAATATGGAANTTGAGGNGGAGAATCCGGGAAAGCAAANACTTGGACGAGGANTAT 751
consensus_6347#1 ATTACAATATGGACGCTGTT-------ATCACCGAGCGCAATGTGCCGGCTGCGTACGTG 701
*** ******** ** *** ** **** ** * * *
consensus_6347#0 AAGGANCGGAATTAGGAACGNGCAGCCCAAACAACGGCCCAACACGGGGNGCCCTCTAGG 811
consensus_6347#1 GCCAACCATAAGT--GCATGAACAGNACCATAGAATATGCGGAAAGGATTCCTTCCTATG 759
* * ** * * * * *** * * * * * ** * *** *
consensus_6347#0 GCGGCCACACCTTCACGGACAGTTCANTACCAGGAAAGACCCCCCNGGCTAAACCANNAA 871
consensus_6347#1 --GAACGCATCGTC-CGCTCTGGTCGAGGTATGGGGAGTACCGATACGTT---CCTCC-- 811
* * ** * ** ** * * ** ** ** ** * * **
consensus_6347#0 TTGGGTANGGAANCGGGCACCAATCCAATAAACACTGCGAGATTGGTATANGCCANNTGG 931
consensus_6347#1 ----GCAGCGATGGCTGCACAA---CANCGAGCATGGCGCANTAATTGCTCTCTATC--- 861
* * ** **** * ** * ** *** * * * *
consensus_6347#0 TNAGGGCACCATTGGNGCAAAGGCCCCACACAAANCTCGCGGCAAGGANCGTAANACCCA 991
consensus_6347#1 ------------------------------------------------------------
consensus_6347#0 AACAANCNGNGNGCGAGAANNTTATTANCANCACCCATACTTGNGATNCCGGCCTTGGTT 1051
consensus_6347#1 ------------------------------------------------------------
consensus_6347#0 TANGTTTCAANACCCANGACAGGCCGCCGGCGAACACACGGNTGGGTCCCGGGTGGCCAC 1111
consensus_6347#1 ------------------------------------------------------------
consensus_6347#0 ATGANGGATATACCAGAAATAGGGGAGCCCACAGCACACACACACTTANCANTAGANTGG 1171
consensus_6347#1 ------------------------------------------------------------
consensus_6347#0 CGCC 1175
consensus_6347#1 ----
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||