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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6357#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 970 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGCGGTGTACAACAAACAACACGCAACTACGTCATTGATGATGATTAGCAAGGTCAGCACATTTACGCACCCGCACCGATAGAACCAGCTCGACCCTAGCATCATCATCATCCGAGTCGGAGGCGACAGTAGTGATGTAACGCACAAACGTTTGGAACGGATTGCCAAAAAAAACACAGCACAAACACACACACATACTCACCAAAACATCACCACCATCCACGTGCGATGGATCGCGAAAAGCACCGCGAAACCCGGTACGCCGGGCTGGCGGGCGGATTGACGGGCTGCATCACGCGCTTCATCTGCCAGCCGCTGGACGTGCTGAAGATACGGCTCCAGCTGCAGGTGGAACCGATCCGGACCGGGTCCAGCCACTCCAAGTACCGCTCGATCGCCCAATCGGTGGCCTGCATCTACCGCGAGGAGGGGCTGCTTGCGTTCTGGAAGGGCCACAACCCGGCCCAGGTGCTGTCGCTCGTGTACGGCGTGGCGCAGTTTTCCTTCTACGAGCGGTTCAACCGAGTGCTGCGCGAGCTGCCCCTGCTGGACGGGCACGACCAGGCACGGCAGTTTGTGTGCGGCGCGTGCAGCGGTTCCTTTGCCGCCCTGACCATCATGCCGCTGGACGTGATACGGACGCGGCTGGTCTCGCAGGACCCGGGCCGGGGGTATCAGAACGCGCTGCAGGGCCTGGGGCAGATTTATCGGCACGAGGGCGTCCGGGGACTGTACCGGGGCGTCGGTCCGGCCATGCTGCAGATTGCCCCGCTGGCTGGTGGTCAGTTTATGTTTTACAATCTGTTCGGTACGGTGGTGAAGCGGTTGGAGGGGCTGTCGCCCGAGGCGCAGCTGCCGTCCGGCGAGCTGTTCGTGTGCGGTGGGCTGGCCGGGCTGTGCACCAAGCTGCTGGTCTATCCGCTCGATCTGACGAAGAAGCGGCTC]
[+] EMBL BM584472 [CCGCCCACGCGTCCGCCCACGCGTCCGCGGTGTACAACAAACAACACGCAACTACGTCATTGATGATGATTAGCAAGGTCAGCACATTTACGCACCCGCACCGATAGAACCAGCTCGACCCTAGCATCATCATCATCCGAGTCGGAGGCGACAGTAGTGATGTAACGCACAAACGTTTGGAACGGATTGCCAAAAAAAACACAGCACAAACACACACACATACTCACCAAAACATCACCACCATCCACGTGCGATGGATCGCGAAAAGCACCGCGAAACCCGGTACGCCGGGCTGGCGGGCGGATTGACGGGCTGCATCACGCGCTTCATCTGCCAGCCGCTGGACGTGCTGAAGATACGGCTCCAGCTGCAGGTGGAACCGATCCGGACCGGGTCCAGCCACTCCAAGTACCGCTCGATCGCCCAATCGGTGGCCTGCATCTACCGCGAGGAGGGGCTGCTTGCGTTCTGGAAGGGCCACAACCCGGCCCAGGTGCTGTCGCTCGTGTACGGCGTGGCGCAGTTTTCCTTCTACGAGCGGTTCAACCGAGTGCTGCGCGAGCTGCCCCTGCTGGACGGGCACGACCAGGCACGGCAGTTTGTGTGCGGCGCGTGCAGCGGTTCCTTTG ]
[+] EMBL BX615060 [ CCACAACCCGGCCCATGTGCTGTCGCTCTTGTACGGCGTGGCGCAGTTTTCCTTCTACGAGCGGTTCAACCGAGTGCTGCGCGAGCTGCCCCTCCTGGACGGGCACGACCAGGCACGGCAGTTTGTGTGCGGCGCGTGCAGCGGTTCCTTTGCCGCCCTGACCATCATGCCGCTGGACGTGATACGGACGCGGCTGGTCTCGCAGGACCCGGGCCGGGGGTATCAGAACGCGCTGCAGGGCCTGGGGCAGATTTATCGGCACGAGGGCGTCCGGGGACTGTACCGGGGCGTCGGTCCGGCCATGCTGCAGATTGCCCCGCTGGCTGGTGGTCAGTTTATGTTTTACAATCTGTTCGGTACGGTGGTGAAGCGGTTGGAGGGGCTGTCGCCCGAGGCGCAGCTGCCGTCCGGCGAGCTGTTCGTGTGCGGTGGGCTGGCCGGGCTGTGCACCAAGCTGCTGGTCTATCCGCTCGATCTGACGAAGAAGCGGCTC]
consensusID : consensus_6357#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 762 fasta sequence
[ATCGGCANGAGGTNNTGAGTCAGACGCGACAGTAGTGATGTAACGCACAAACGGTTGGAACGGACTGCAAAAAAAAAAAAACAGCACAAACACACACACTCACCAAAACATCACCAGCATCCACGTGCGATGGATCGCGAAAAGCACCGCGAAACCCGGTACGCCGGGCTGGCGGGCGGATTGACGGGCTGCATCACACGCTTCATCTGTCAGCCGCTGGACGTGCTGAAGATACGGCTCCAGCTGCAGGTGGAACCGATCCGGTCCGGGTCCAGCCACTCCAAGTACCGCTCGATCGCCCAATCGGTGGCCTGCATCTACCGCGAGGAGGGGCTGCTTGCGTTCTGGAAGGGCCACAACCCGGCCCAGGTGCTGTCGCTCGTGTACGGCGTGGCGCAGTTTTCCTTCTACGAGCGGTTCAACCGAGTGCTGCGCGAGCTGCCCCTCCTGGACGGGCACGACCAGGCACGGCAGTTTGTGTGCGGCGCGTGCAGCGGTTCCTTTGCCGCCCTGACCATCATGCCGCTGGACGTGATACGGACGCGGCTGGTCTCGCAGGACCCGGGCCGGGGTATCAGAACGCGCTGCAGGCCTGGGGCAGATTTATCTGGCAACAGAGGGCGTCCGGGGGACTGTACCGGGGGCAGTCGGTCCGGCATGCTGGCAGATTGCCCCCGNTGGCTTGTTGGTCAGTTATGGTTTACACTCTTGTTCGNTACNGGTAGGTGAAGCNCGNGTAAGGAAGGGGTATCGCCAGAGGCG]
[+] EMBL BX469590 [ATCGGCANGAGGTNNTGAGTCAGACGCGACAGTAGTGATGTAACGCACAAACGGTTGGAACGGACTGCAAAAAAAAAAAAACAGCACAAACACACACACTCACCAAAACATCACCAGCATCCACGTGCGATGGATCGCGAAAAGCACCGCGAAACCCGGTACGCCGGGCTGGCGGGCGGATTGACGGGCTGCATCACACGCTTCATCTGTCAGCCGCTGGACGTGCTGAAGATACGGCTCCAGCTGCAGGTGGAACCGATCCGGTCCGGGTCCAGCCACTCCAAGTACCGCTCGATCGCCCAATCGGTGGCCTGCATCTACCGCGAGGAGGGGCTGCTTGCGTTCTGGAAGGGCCACAACCCGGCCCAGGTGCTGTCGCTCGTGTACGGCGTGGCGCAGTTTTCCTTCTACGAGCGGTTCAACCGAGTGCTGCGCGAGCTGCCCCTCCTGGACGGGCACGACCAGGCACGGCAGTTTGTGTGCGGCGCGTGCAGCGGTTCCTTTGCCGCCCTGACCATCATGCCGCTGGACGTGATACGGACGCGGCTGGTCTCGCAGGACCCGGGCCGGGGTATCAGAACGCGCTGCAGGCCTGGGGCAGATTTATCTGGCAACAGAGGGCGTCCGGGGGACTGTACCGGGGGCAGTCGGTCCGGCATGCTGGCAGATTGCCCCCGNTGGCTTGTTGGTCAGTTATGGTTTACACTCTTGTTCGNTACNGGTAGGTGAAGCNCGNGTAAGGAAGGGGTATCGCCAGAGGCG]
consensusID : consensus_6357#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 673 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGCTTTGGCTGGACCACCAGTAAGTACGGGACCACCGAAAAACGGGCAACCAAGCGGATGCCTTCTTTTCGTCGGACGCACGGTGTACAACAAACAACACGCAACTACGCCATTGATGATGATTAGCAAGGTCAGCACAGTTACGCACCCGCACCGATAGAACCAGCCCGACCCCAG---CATCATCATCCGAGTCGGAGGCGACAGTAGTGATGTAACGCACAAACGTTTGGAACGGATTGCCAAAAAAAAAACACACAGCACAAACACACACATACTCACCAAAACATCACCAGCATCCACGTGCGATGGATCGCGAAAAGCACCGCGAAACCCGGTACGCCGGGCTGGCGGGCGGATTGACGGGCTGCATCACGCGCTTCATCTGTCAGCCGCTGGACGTACTGAAGATACGGCTCCAGCTGCAGGTGGAACCGATCCGGGCCGGGTCCAGCCACTCCAAGTACCGCTCGATCGCCCAATCGGTGGCCTGCATCTACCGCGAGGAGGGGCTGCTTGCGTTCTGGAAGGGCCACAACCCGGCCCAGGTGCTGTCGCTCGTGTACGGCGTGGCGCAGTTTTCCTTCTACGAGCGGTTCAACCGAGTGCTGCGCGAGCTGCCCCTGCTGGACGGGCACGACCAGGCACGGC]
[+] EMBL BM635474 [CCGCCCACGCGTCCGCCCACGCGTCCGCTTTGGCTGGACCACCAGTAAGTACGGGACCACCGAAAAACGGGCAACCAAGCGGATGCCTTCTTTTCGTCGGACGCACGGTGTACAACAAACAACACGCAACTACGCCATTGATGATGATTAGCAAGGTCAGCACAGTTACGCACCCGCACCGATAGAACCAGCCCGACCCCAG CATCATCATCCGAGTCGGAGGCGACAGTAGTGATGTAACGCACAAACGTTTGGAACGGATTGCCAAAAAAAAAACACACAGCACAAACACACACATACTCACCAAAACATCACCAGCATCCACGTGCGATGGATCGCGAAAAGCACCGCGAAACCCGGTACGCCGGGCTGGCGGGCGGATTGACGGGCTGCATCACGCGCTTCATCTGTCAGCCGCTGGACGTACTGAAGATACGGCTCCAGCTGCAGGTGGAACCGATCCGGGCCGGGTCCAGCCACTCCAAGTACCGCTCGATCGCCCAATCGGTGGCCTGCATCTACCGCGAGGAGGGGCTGCTTGCGTTCT ]
[+] EMBL BM605833 [ CCGCTTTGGCTGGACCGCCAGTAAGTACGGGACCACCGAAAAACGGGCAACCAAGCGGATGCCTTCTTTTCGTCGGACGCACGGTGTACAACAAACAACACGCAACTACGCCATTGATGATGATTAGCAAGGTCAGCACAGTTACGCACCCGCACCGATAGAACCAGCCCGACCCCAGCATCATCATCATCCGAGTCAGAGGCGACAGTAGTGATGTAACGCACAAACGTTTGGAACGGACTGCCAAAAAAAACACACACAGCACAAACACACAC ACTCACCAAAACATCACCAGCATCCACGTGCGATGGATCGCGAAAAGCACCGCGAAACCCGGTACGCCGGGCTGGCGGGCGGATTGACGGGCTGCATCACGCGCTTCATCTGTCAGCCGCTGGACGTGCTGAAGATACGGCTCCAGCTGCAGGTGGAACCGATCCGGTCCGGCTCCAGCCACTCCAAGTACCGCTCGATCGCCCAATCGGTGGCCTGCATCTACCGCGAGGAGGGGCTGCTTGCGTTCTGGAAGGGCCACAACCCGGCCCAGGTGCTGTCGCTCGTGTACGGCGTGGCGCAGTTTTCCTTCTACGAGCGGTTCAACCGAGTGCTGCGCGAGCTGCCCCTGCTGGACGGGCACGACCAGGCACGGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6357#0 ------------------------------------------------------------
consensus_6357#1 ------------------------------------------------------------
consensus_6357#2 CCGCCCACGCGTCCGCCCACGCGTCCGCTTTGGCTGGACCACCAGTAAGTACGGGACCAC 60
consensus_6357#0 ---------------CCGCCCACGCGTCCGCCCACGCGTCCGCGGTGTACAACAAACAAC 45
consensus_6357#1 ------------------------------------------------------------
consensus_6357#2 CGAAAAACGGGCAACCAAGCGGATGCCTTCTTTTCGTCGGACGCACGGTGTACAACAAAC 120
consensus_6357#0 ACGCAACTACGTCATTGATGATGATTAGCAAGGTCAGCACATTTACGCACCCGCACCGAT 105
consensus_6357#1 ------------------------------------------------------------
consensus_6357#2 AACACGCAACTACGCCATTGATGATGATTAGCAAGGTCAGCACAGTTACGCACCCGCACC 180
consensus_6357#0 AGAACCAGCTCGACCCTAGCATCATCATCATCCGAGTCGGAGGCGACAGTAGTGATGTAA 165
consensus_6357#1 -----------------ATCGGCANGAGGTNNTGAGTCAGACGCGACAGTAGTGATGTAA 43
consensus_6357#2 GATAGAACCAGCCCGACCCCAGCATCATCATCCGAGTCGGAGGCGACAGTAGTGATGTAA 240
* ** * ***** ** ******************
consensus_6357#0 CGCACAAACGTTTGGAACGGATTGCCAAAAAAAACA----CAGCACAAACACACACACAT 221
consensus_6357#1 CGCACAAACGGTTGGAACGGACTGCAAAAAAAAAAAAA--CAGCACAAACACACACA--- 98
consensus_6357#2 CGCACAAACGTTTGGAACGGATTGCCAAAAAAAAAACACACAGCACAAACACACACA--T 298
********** ********** *** ******** * *****************
consensus_6357#0 ACTCACCAAAACATCACCACCATCCACGTGCGATGGATCGCGAAAAGCACCGCGAAACCC 281
consensus_6357#1 -CTCACCAAAACATCACCAGCATCCACGTGCGATGGATCGCGAAAAGCACCGCGAAACCC 157
consensus_6357#2 ACTCACCAAAACATCACCAGCATCCACGTGCGATGGATCGCGAAAAGCACCGCGAAACCC 358
****************** ****************************************
consensus_6357#0 GGTACGCCGGGCTGGCGGGCGGATTGACGGGCTGCATCACGCGCTTCATCTGCCAGCCGC 341
consensus_6357#1 GGTACGCCGGGCTGGCGGGCGGATTGACGGGCTGCATCACACGCTTCATCTGTCAGCCGC 217
consensus_6357#2 GGTACGCCGGGCTGGCGGGCGGATTGACGGGCTGCATCACGCGCTTCATCTGTCAGCCGC 418
**************************************** *********** *******
consensus_6357#0 TGGACGTGCTGAAGATACGGCTCCAGCTGCAGGTGGAACCGATCCGGACCGGGTCCAGCC 401
consensus_6357#1 TGGACGTGCTGAAGATACGGCTCCAGCTGCAGGTGGAACCGATCCGGTCCGGGTCCAGCC 277
consensus_6357#2 TGGACGTACTGAAGATACGGCTCCAGCTGCAGGTGGAACCGATCCGGGCCGGGTCCAGCC 478
******* *************************************** ************
consensus_6357#0 ACTCCAAGTACCGCTCGATCGCCCAATCGGTGGCCTGCATCTACCGCGAGGAGGGGCTGC 461
consensus_6357#1 ACTCCAAGTACCGCTCGATCGCCCAATCGGTGGCCTGCATCTACCGCGAGGAGGGGCTGC 337
consensus_6357#2 ACTCCAAGTACCGCTCGATCGCCCAATCGGTGGCCTGCATCTACCGCGAGGAGGGGCTGC 538
************************************************************
consensus_6357#0 TTGCGTTCTGGAAGGGCCACAACCCGGCCCAGGTGCTGTCGCTCGTGTACGGCGTGGCGC 521
consensus_6357#1 TTGCGTTCTGGAAGGGCCACAACCCGGCCCAGGTGCTGTCGCTCGTGTACGGCGTGGCGC 397
consensus_6357#2 TTGCGTTCTGGAAGGGCCACAACCCGGCCCAGGTGCTGTCGCTCGTGTACGGCGTGGCGC 598
************************************************************
consensus_6357#0 AGTTTTCCTTCTACGAGCGGTTCAACCGAGTGCTGCGCGAGCTGCCCCTGCTGGACGGGC 581
consensus_6357#1 AGTTTTCCTTCTACGAGCGGTTCAACCGAGTGCTGCGCGAGCTGCCCCTCCTGGACGGGC 457
consensus_6357#2 AGTTTTCCTTCTACGAGCGGTTCAACCGAGTGCTGCGCGAGCTGCCCCTGCTGGACGGGC 658
************************************************* **********
consensus_6357#0 ACGACCAGGCACGGCAGTTTGTGTGCGGCGCGTGCAGCGGTTCCTTTGCCGCCCTGACCA 641
consensus_6357#1 ACGACCAGGCACGGCAGTTTGTGTGCGGCGCGTGCAGCGGTTCCTTTGCCGCCCTGACCA 517
consensus_6357#2 ACGACCAGGCACGGC--------------------------------------------- 673
***************
consensus_6357#0 TCATGCCGCTGGACGTGATACGGACGCGGCTGGTCTCGCAGGACCCGGGCCGGGGGTATC 701
consensus_6357#1 TCATGCCGCTGGACGTGATACGGACGCGGCTGGTCTCGCAGGACCCGGGCCGGGG-TATC 576
consensus_6357#2 ------------------------------------------------------------
consensus_6357#0 AGAACGCGCTGCAGGGCCTGGGGCAGATTTATC-GGCAC--GAGGGCGTCCGGGG-ACTG 757
consensus_6357#1 AGAACGCGCTGCAGG-CCTGGGGCAGATTTATCTGGCAACAGAGGGCGTCCGGGGGACTG 635
consensus_6357#2 ------------------------------------------------------------
consensus_6357#0 TACCGGGGC--GTCGGTCCGGCCATGCTG-CAGATTGCCCC-GCTGGCTGGT-GGTCAGT 812
consensus_6357#1 TACCGGGGGCAGTCGGTCCGGC-ATGCTGGCAGATTGCCCCCGNTGGCTTGTTGGTCAGT 694
consensus_6357#2 ------------------------------------------------------------
consensus_6357#0 TTATGTTTTACAATCT-GTTCGGTACGGT--GGTGAAGCGGTTG----GAGGGGCTGTCG 865
consensus_6357#1 T-ATGGTTTACACTCTTGTTCGNTACNGGTAGGTGAAGCNCGNGTAAGGAAGGGGTATCG 753
consensus_6357#2 ------------------------------------------------------------
consensus_6357#0 CCCGAGGCGCAGCTGCCGTCCGGCGAGCTGTTCGTGTGCGGTGGGCTGGCCGGGCTGTGC 925
consensus_6357#1 CCAGAGGCG--------------------------------------------------- 762
consensus_6357#2 ------------------------------------------------------------
consensus_6357#0 ACCAAGCTGCTGGTCTATCCGCTCGATCTGACGAAGAAGCGGCTC 970
consensus_6357#1 ---------------------------------------------
consensus_6357#2 ---------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||