cluster # 6380

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Anopheles gambiae
cluster # 6380 cluster # 6380 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6380#0 length = 696 sequences # 1

consensus_6380#1 length = 681 sequences # 4

consensusID : consensus_6380#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 696
fasta sequence

                              [CCGCGGACGCGTGGGAAAGTGTAGCAATTGATAGACGGAATGATAAGGGTGTGAGATCCAGTTTTCAAAACGAACCCGGTACAACAAATCAAATGAAGAGGGAGTAGTAGAATGCCCCGTTTGGGTTGCCTATATGATGAACACTTTTTTTTCCTAGGCAAACACAACAACAAGAAGAGAGTGATGGTGGTGTTAGGTTTGCTTTCCCGGCAGTAGTAACCGAGTTGTGTTGTGTACGATATGTTTTTGTACGGAAAAGGGCTAGAGGAAACATTGAAAATAAGTTCCCTTCAGTGAAAGCAACAAGTGCAGAGTAAGTACGAAGTTGGGTCCGTTCATTCCGTGACACCGACGATACAATCGAACAATTCCTCAAATCGCCTCCTGTTTTTTGCTCTCCTTTGTATGTTGTTGCTAAAACTGGCGCTTTTTTGTGTGTTACGGATGTTTTGAATGTTCCGGATTTGAAAGCGATCAATTAGTTTTCTCATTTTGCTTCGATCGTTTCCGCCAAGAACAGAACAACCTCCCGACTAACTGAAATGTGTGTGAAATTGAACCAATAGACTATTATACATAACAAGAAGAAAACATTATACTGAGAGTGTAAAAGTGATGCAACTGATAGTAAATTAAATTGCTTCCCCTTGTCTGCTTACAGAACAATACACATCCTCTGGTAAAATTGAAGTAAGG]

[+] EMBL BM592934             [CCGCGGACGCGTGGGAAAGTGTAGCAATTGATAGACGGAATGATAAGGGTGTGAGATCCAGTTTTCAAAACGAACCCGGTACAACAAATCAAATGAAGAGGGAGTAGTAGAATGCCCCGTTTGGGTTGCCTATATGATGAACACTTTTTTTTCCTAGGCAAACACAACAACAAGAAGAGAGTGATGGTGGTGTTAGGTTTGCTTTCCCGGCAGTAGTAACCGAGTTGTGTTGTGTACGATATGTTTTTGTACGGAAAAGGGCTAGAGGAAACATTGAAAATAAGTTCCCTTCAGTGAAAGCAACAAGTGCAGAGTAAGTACGAAGTTGGGTCCGTTCATTCCGTGACACCGACGATACAATCGAACAATTCCTCAAATCGCCTCCTGTTTTTTGCTCTCCTTTGTATGTTGTTGCTAAAACTGGCGCTTTTTTGTGTGTTACGGATGTTTTGAATGTTCCGGATTTGAAAGCGATCAATTAGTTTTCTCATTTTGCTTCGATCGTTTCCGCCAAGAACAGAACAACCTCCCGACTAACTGAAATGTGTGTGAAATTGAACCAATAGACTATTATACATAACAAGAAGAAAACATTATACTGAGAGTGTAAAAGTGATGCAACTGATAGTAAATTAAATTGCTTCCCCTTGTCTGCTTACAGAACAATACACATCCTCTGGTAAAATTGAAGTAAGG]




>consensus_6380#0
CCGCGGACGCGTGGGAAAGTGTAGCAATTGATAGACGGAATGATAAGGGTGTGAGATCCA
GTTTTCAAAACGAACCCGGTACAACAAATCAAATGAAGAGGGAGTAGTAGAATGCCCCGT
TTGGGTTGCCTATATGATGAACACTTTTTTTTCCTAGGCAAACACAACAACAAGAAGAGA
GTGATGGTGGTGTTAGGTTTGCTTTCCCGGCAGTAGTAACCGAGTTGTGTTGTGTACGAT
ATGTTTTTGTACGGAAAAGGGCTAGAGGAAACATTGAAAATAAGTTCCCTTCAGTGAAAG
CAACAAGTGCAGAGTAAGTACGAAGTTGGGTCCGTTCATTCCGTGACACCGACGATACAA
TCGAACAATTCCTCAAATCGCCTCCTGTTTTTTGCTCTCCTTTGTATGTTGTTGCTAAAA
CTGGCGCTTTTTTGTGTGTTACGGATGTTTTGAATGTTCCGGATTTGAAAGCGATCAATT
AGTTTTCTCATTTTGCTTCGATCGTTTCCGCCAAGAACAGAACAACCTCCCGACTAACTG
AAATGTGTGTGAAATTGAACCAATAGACTATTATACATAACAAGAAGAAAACATTATACT
GAGAGTGTAAAAGTGATGCAACTGATAGTAAATTAAATTGCTTCCCCTTGTCTGCTTACA
GAACAATACACATCCTCTGGTAAAATTGAAGTAAGG

consensusID : consensus_6380#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 681
fasta sequence

                              [TCATGGGACGAGATGGAATGAATGCTACTACTAAAATTCGATACAATGTGCTGTGTCACAATGTTTTCCCCCTGTTTACGCGCGTACATGATGATGTTGATGATGACGTAGAGAAGGAGCTGCCCATCAGGGAGAGACGGTGCGCATAGTTTAGCAAAGTGTAGCAATTGATAGACGGAATGATAAGGGTGTGAGATCCAGTTTTCGAAACGAACCCGGTACAACAAATCAGATCAA--GAGGAGGGAGTAGTAGAATGCCCCGTTTGGGTTGCCTATATGATGAACACTTTTTTTTCCTAGGCAAACACAACAACAAGAAGAGAGTGATGGTGGTGTTAGGTTTGCTTTCGCGGCAGTAGTAACCGAGTTGTGTTGTGTACGATATGTTTTTGTACGGAAAAGGGCTAGAGGAAACATTGAAAATAAGTTCCCTTCAGTGAAGCAACAAGTGCAGAGTAAGTACGAAGTTGGGTCCGTTCATTCCGTGACACCGACGATACAATCGAACAATTCCTCAAATCGCCTCCTGTTTTTTGCTCTCCTTTGTATGTTGTTGCTAAAACTGGCGCTTTTTTGTGTGTTACGGATGTTTTGAATGTTCCGGATTTGAAAGCGATCAATTAGTTTTCTCATTTTGCTTCGATCGTTTCCGCCAAGAACAGAACAACCTCCCGACTAACT]

[+] EMBL BX602286             [TCATGGGACGAGATGGAATGAATGCTACTACTAAAATTCGATACAATGTGCTGTGTCACAATGTTTTCCCCCTGTTTACGCGCGTACATGATGATGTTGATGATGACGTAGAGAAGGAGCTGCCCATCAGGGAGAGACGGTGCGCATAGTTTAGCAAAGTGTAGCAATTGATAGACGGAATGATAAGGGTGTGAGATCCAGTTTTCGAAACGAACCCGGTACAACAAATCAGATCAA  GAGGAGGGAGTAGTAGAATGCCCCGTTTGGGTTGCCTATATGATGAACACTTTTTTTTCCTAGGCAAACACAACAACAAGAAGAGAGTGATGGTGGTGTTAGGTTTGCTTTCGCGGCAGTAGTAACCGAGTTGTGTTGTGTACGATATGTTTTTGTACGGAAAAGGGCTAGAGGAAACATTGAAAATAAGTTCCCTTCAGTGAAGCAACAAGTGCAGAGTAAGTACGAAGTTGGGTCCGTTCATTCCGTGACACCGACGATACAATCGAACAATTCCTCAAATCGCCTCCTGTTTTTTGCTCTCCTTTGTATGTTGTTGCTAAAACTGGCGCTTTTTTGTGTGTTACGGATGTTTTGAATGTTCCTGATTTGAAAGCGATCAATTAGTTTTCTCATTTTGCTTCGATCGTTTCCGCCAAGAACAGAACAACCTCCCGACTAACT]
[+] EMBL BM595761             [   ccGGACGAGATGGAATGAATGCTACTACTAAAATTCGATACAATGTGCTGTGTCACAATGTTTTCCCCCTGTTTACGCGCGTACATGATGATGTTGATGATGACGTAGAGAAGGAGCTGCCCATCAGGGAGAGACGGTGCGCATAGTTTAGCAAAGTGTAGCAATTGATAGACGGAATGATAAGGGTGTGAGATCCAGTTTTCGAAACGAACCCGGTACAACAAATCAGATCAA  GAGGAGGGAGTAGTAGAATGCCCCGTTTGGGTTGCCTATATGATGAACACTTTTTTTTCCTAGGCAAACACAACAACAAGAAGAGAGTGATGGTGGTGTTAGGTTTGCTTTCGCGGCAGTAGTAACCGAGTTGTGTTGTGTACGATATGTTTTTGTACGGAAAAGGGCTAGAGGAAACATTGAAAATAAGTTCCCTTCAGTGAAGCAACAAGTGCAGAGTAAGTACGAAGTTGGGTCCGTTCATTCCGTGACACCGACGATACAATCGAACAATTCCTCAAATCGCCTCCTGTTTTTTGCTCTCCTTTGTATGTTGTTGCTAAAACTGGCGCTTTTTTGTGTGTTACGGATGTTTTGAATGTTCCGGATTTGAAAGCGATCAATTAGTTTTCTCATTTTGCTTCGATCGTTTCCGCCAAGAACAGAACAACCTCCCGACTA   ]
[+] EMBL BM612305             [             ccGAATGAATGCTACTACTAAAATTCGATACATTGTGCTGTGTCACAATGTTTTCCCCCTGTTCGCGCGCGTACATGCTGATGTTGATGATGACGTAGAGAAGGAGCCGCCCATCAGGGAGAGACGGTGCGCATAGTTTAGCAAAGTGTAGCAATTGATAGACGGAATGATAAGGGTGTGAGATCCAGTTTTCAAAACGAACCCGGGTTAACAAA CAAATCAAATGAAGAGGGAGTAGTAGAATGCCCCGTTTGGGTT                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL BM626569             [                ccgGAATGCTACTACTAAAATTCGATACAATGTGCTGTGTCACAATGTTTTCCCCCTGTTTACGCGCGTACATGATGATGTTGATGATGACGTAGAGAAGGAGCTGCCCATCAGGGAGAGACGGTGCGCATAGTTTAGCAAAGTGTAGCAATTGATAGACGGAATGATAAGGGTGTGAGATCCAGTTTTCGAAACGAACCCGGTACAACAAATCAGATCAA  GAGGAGGGAGTAGTAGAATGCCCCGTTTGGGTTGCCTATATGATGAACACTTTTTTTTCCTAGGCAAACACAACAACAAGAAGAGAGTGATGGTGGTGTTAGGTTTGCTTTCGCGGCAGTAGTAACCGAGTTGTGTTGTGTACGATATGTTTTTGTACGGAAAAGGGCTAGAGGAAACATTGAAAATAAGTTCCCTTCAGTGAAGCAACAAGTGCAGAGTAAGTACGAAGTTGGGTCCGTTCATTCCGTGACACCGACGATACAATCGAACAATTCCTCAAATCGCCTCCTGTTTTTTGCTCTCCTTTGTATGTTGTTGCTAAAACTGGCGCTTTTTTGTGTGTTACGGATGTTTTGAATGTTCCGGATTTGAAAGCGATCCATTAGTTTTCTCATTTTGCTTCGATCGTTTCCGCCAAGAACAGAACAACCTCCCGACT    ]




>consensus_6380#1
TCATGGGACGAGATGGAATGAATGCTACTACTAAAATTCGATACAATGTGCTGTGTCACA
ATGTTTTCCCCCTGTTTACGCGCGTACATGATGATGTTGATGATGACGTAGAGAAGGAGC
TGCCCATCAGGGAGAGACGGTGCGCATAGTTTAGCAAAGTGTAGCAATTGATAGACGGAA
TGATAAGGGTGTGAGATCCAGTTTTCGAAACGAACCCGGTACAACAAATCAGATCAAGAG
GAGGGAGTAGTAGAATGCCCCGTTTGGGTTGCCTATATGATGAACACTTTTTTTTCCTAG
GCAAACACAACAACAAGAAGAGAGTGATGGTGGTGTTAGGTTTGCTTTCGCGGCAGTAGT
AACCGAGTTGTGTTGTGTACGATATGTTTTTGTACGGAAAAGGGCTAGAGGAAACATTGA
AAATAAGTTCCCTTCAGTGAAGCAACAAGTGCAGAGTAAGTACGAAGTTGGGTCCGTTCA
TTCCGTGACACCGACGATACAATCGAACAATTCCTCAAATCGCCTCCTGTTTTTTGCTCT
CCTTTGTATGTTGTTGCTAAAACTGGCGCTTTTTTGTGTGTTACGGATGTTTTGAATGTT
CCGGATTTGAAAGCGATCAATTAGTTTTCTCATTTTGCTTCGATCGTTTCCGCCAAGAAC
AGAACAACCTCCCGACTAACT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6380#0      ------------------------------------------------------------
consensus_6380#1      TCATGGGACGAGATGGAATGAATGCTACTACTAAAATTCGATACAATGTGCTGTGTCACA 60
                                                                                  

consensus_6380#0      ------------------------------------------------------------
consensus_6380#1      ATGTTTTCCCCCTGTTTACGCGCGTACATGATGATGTTGATGATGACGTAGAGAAGGAGC 120
                                                                                  

consensus_6380#0      -------------------CCGCGGAC-GCGTGGGAAAGTGTAGCAATTGATAGACGGAA 40
consensus_6380#1      TGCCCATCAGGGAGAGACGGTGCGCATAGTTTAGCAAAGTGTAGCAATTGATAGACGGAA 180
                                           *** *  *  * * *************************

consensus_6380#0      TGATAAGGGTGTGAGATCCAGTTTTCAAAACGAACCCGGTACAACAAATCAAAT---GAA 97
consensus_6380#1      TGATAAGGGTGTGAGATCCAGTTTTCGAAACGAACCCGGTACAACAAATCAGATCAAGAG 240
                      ************************** ************************ **   ** 

consensus_6380#0      GAGGGAGTAGTAGAATGCCCCGTTTGGGTTGCCTATATGATGAACACTTTTTTTTCCTAG 157
consensus_6380#1      GAGGGAGTAGTAGAATGCCCCGTTTGGGTTGCCTATATGATGAACACTTTTTTTTCCTAG 300
                      ************************************************************

consensus_6380#0      GCAAACACAACAACAAGAAGAGAGTGATGGTGGTGTTAGGTTTGCTTTCCCGGCAGTAGT 217
consensus_6380#1      GCAAACACAACAACAAGAAGAGAGTGATGGTGGTGTTAGGTTTGCTTTCGCGGCAGTAGT 360
                      ************************************************* **********

consensus_6380#0      AACCGAGTTGTGTTGTGTACGATATGTTTTTGTACGGAAAAGGGCTAGAGGAAACATTGA 277
consensus_6380#1      AACCGAGTTGTGTTGTGTACGATATGTTTTTGTACGGAAAAGGGCTAGAGGAAACATTGA 420
                      ************************************************************

consensus_6380#0      AAATAAGTTCCCTTCAGTGAAAGCAACAAGTGCAGAGTAAGTACGAAGTTGGGTCCGTTC 337
consensus_6380#1      AAATAAGTTCCCTTCAGTGAA-GCAACAAGTGCAGAGTAAGTACGAAGTTGGGTCCGTTC 479
                      ********************* **************************************

consensus_6380#0      ATTCCGTGACACCGACGATACAATCGAACAATTCCTCAAATCGCCTCCTGTTTTTTGCTC 397
consensus_6380#1      ATTCCGTGACACCGACGATACAATCGAACAATTCCTCAAATCGCCTCCTGTTTTTTGCTC 539
                      ************************************************************

consensus_6380#0      TCCTTTGTATGTTGTTGCTAAAACTGGCGCTTTTTTGTGTGTTACGGATGTTTTGAATGT 457
consensus_6380#1      TCCTTTGTATGTTGTTGCTAAAACTGGCGCTTTTTTGTGTGTTACGGATGTTTTGAATGT 599
                      ************************************************************

consensus_6380#0      TCCGGATTTGAAAGCGATCAATTAGTTTTCTCATTTTGCTTCGATCGTTTCCGCCAAGAA 517
consensus_6380#1      TCCGGATTTGAAAGCGATCAATTAGTTTTCTCATTTTGCTTCGATCGTTTCCGCCAAGAA 659
                      ************************************************************

consensus_6380#0      CAGAACAACCTCCCGACTAACTGAAATGTGTGTGAAATTGAACCAATAGACTATTATACA 577
consensus_6380#1      CAGAACAACCTCCCGACTAACT-------------------------------------- 681
                      **********************                                      

consensus_6380#0      TAACAAGAAGAAAACATTATACTGAGAGTGTAAAAGTGATGCAACTGATAGTAAATTAAA 637
consensus_6380#1      ------------------------------------------------------------
                                                                                  

consensus_6380#0      TTGCTTCCCCTTGTCTGCTTACAGAACAATACACATCCTCTGGTAAAATTGAAGTAAGG 696
consensus_6380#1      -----------------------------------------------------------