cluster # 6407

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Anopheles gambiae
cluster # 6407 cluster # 6407 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6407#0 length = 734 sequences # 4

consensus_6407#1 length = 669 sequences # 1

consensusID : consensus_6407#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 734
fasta sequence

                              [TTTTTTTTGACGTGTTTAAAATATTGGTTTCTTGTATTTTCTTCTGCTCTTTTTCAACTCTCTGCTTCATCTTCTCTTCACTCCTGTTTGTTTTTTTTTGTACGTTTACGATGCGTAACAGCAGTTAGGCACACCACCATGCTCCACACATTCACGCACAGGAAAAACACACGAAACGTTGTACCAAAAACAAAAACGGCAACATGCTCGGGAGGGTGTCCGGGAAAAATGTTGTTGGCTGTTTCCCTTCGGAATCGGGCGCAATAGCGATACCGCAGAACAACTGCATCCCTTTGCGATCCATCCCCGAAGCACTCCGAGCATGTAACGTCGGTTTGTGTTTCCAAGACCCTTACAGACTTAAGCCCGCAGCACGCAAGCACCACCGGCGGCCTTTATGCGCTCCTCGGCCAGGGGGGAAAAGAATTTCGCCTTCACGATGATCGGGCC-GCAAGTTTTCGGGAGTTCACCGGATCCGAGCAGCTTGAAGTAACCGAACTGGACCAGAACAACCACCGGCACCTTCTCGGGGTTCTTCTTCGCCTCCCCGCGCACCTTCTCCGGCACCAGGTTCCACAAATGTAAAAAGTTAATGGTCGGGCAGAACTTGTGGTTTCGGTTAAGGTGGAAGTTTCGCATACCGACCTTGCCGAAGTAACCCGGATGGTATTTGTCGAAGTTGAAACGGTGATGGTGCATACCACCAGCTTTACCGCGACCCCCAGGATGCTTAC]

[+] EMBL CNS0968O             [TTTTTTTTGACGTGTTTAAAAAATTGGTTTCTTGTATTTTCTTCTGCTCTTTTTCAACTCTCTGCTTCATCTTCTCTTCACTCCTGTTTGTGTTTTTTTGTACGTGTACGATGCGTAACAGCAGTTAGGCACACCACCATGCTCCACACATTCACGCACAGGAAATACACACGAAACGTTGTACCAAAAACAAAAACGGCAACATGCTCGGGAGGGTGTTCGGGAGAAATGTTGTAGGCTGTTTGCCTTCGGAATCGGGCGCAATAGCGATACCGCAGAACAACTGCATTTCTTTGCGATCCATCCCCGAAGCACTTCGAGCATGTAACGTCGGTTTGTGTTTACAAGACCCTTACAGACTTAAGCCCGCAGCACGCAAGCACCACCGGCGGCCTTGATGCGCTCCTCGGCCAGGCGGGAAAAGAATTTCGCCTTCACGATGATCGGGCCAGCAAGTTTTCGGGAGTCCACCGGATCCGAGCAGCTTGAAGTAACCGAACTGGACCAGAACAACCACCGGCACCTTCTCGGGGTTCTTCTTCGCCTCCCCGCGCACCTTCTCCGGCACCAGGTTCCACAAATGTA                                                                                                                                                      ]
[+] EMBL CNS09HR6             [         ACGTGTTTAAAATATTGGTTTCTTGTATTTTCTTCTGCTCTTTTTCAACTCTCTGCTTCATCTTCTCTTCACTCCTGTTTGTTTTTTTTTTTACGTTTACGATGCGTAACAACAGTTAGGCACACCACCATGCTCCACACATTCACGCACAGGAAAAACACACGAAACGTTGTACCAAAAACAAAAACGGCAACATGCTCGGGAGGGTGTCCGGGAAAAATGTTGTTGGCTGTTTCCCTTCGGAATCGGGCGCAATAGCGATACCGCAGAACAACTGCATCCCTTTGCGATCCATCCCCGAAGCACTCCGAGCATGTAACGTCGGTTTGTGTTTCCAAAACCCTTACAGACTTAAGCCCGCAGCACGCAAGCCCCACCGGCGGCCTTTATGCCCTCCTCGGCCAG                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CNS09QOY             [                    ATATTGGTTTCTTGTATTTTCTTCTGCTCTTTTTCAACTCTCTGCTTCATCTTCTCTTCACTCCTGTTTGTTTTTTTTTGTACGTTTACGATGCGTAACAGCAGTAAGGCACACCACCATGCTCCACACATTCACGCACAGGAAAAACACACGAAACGTTGTACCAAAAACAAAAACGGCAACATGCTCGGGAGGGTGTCCGGGAAAAATGTTGTGGGCTGTTTCCCTCCGGAATCGGGCGCAAAAGCGATACCGCAGAACAACTGCATCCCTTTGCGATCCATCCCCGAAGCACTCCGAGCATGTAACGTCGGTTTGTGTTTTCAAGACCCTTACAGACTTAAGCCCGCAGCACGCAAGCCCCACCGGCGGCCTTTATGCGCTCCTCGGCCAGGGGGGAAAAGAATTTCGCCTTCACGATGATCGGGCC GCAAGTTTTCGGGAGTTCACCGGATCCGAGCAGCTTGAAGTAACCGAACTGGACCAGAACAACCACCGGCACCTTCTCGGGGTTTTTCTTCGCCTCCCCGCGCACCTTCTCCGGCACCAGGTTCCACAAATGTTAAAAGTTAATGGTCGGGCAGAACTTGTGGTTTCGGTTAAGGTGGAAGTTTCGCATACCGACCTTGCCGAAGTAACCCGGATGGTATTTGTCGAAGTTGAAACGGTGATGGTGCATACCACCAGCTTTACCGCGACCCCCAGGATGCTTAC]
[+] EMBL CNS09DW6             [                                                                         ccCTCCACCCCTGTTTGTTTTTTTTTGTACGTTTACGATGCGTAACAACAGTAAGGCACACCACCATGCTCCACACATTCACGCACAGGAAAAACACACGAAACGTTGTACCAAAAACAAAAACGGCAACATGCTCGGGAGGGTGTGCGGGAAAAATGTTGTTGGCTGTTTCCCTCCGGAATCGGGCGCAATAGCGATACCGCAGAACAACTTCATCCCTTTGCGATCCATCCCCGAAGCACTCCGAGCATGTAACGTCGGTTTGTGTTTCCAAAACCCTTACAGACTTAAGCCCGCAGCACGCAAGCACCACCGGCGGCCTTTATGCGCTCCTCGGCCAGGGGGGAAAAGAATTTCGCCTTCACGATGATCGGGCC GCAAGTTTTCGGGATTTCACCGGATCCGAGCAGCTTGAAGTAACCGAACTGGACCAGAACAACCACCGGCACCTTCTCGGGGTTCTTCTTCGCCTCCCCGCGCACCTTCTCCGGCACCAGGCTCCACAAATGTAAAA                                                                                                                                                   ]




>consensus_6407#0
TTTTTTTTGACGTGTTTAAAATATTGGTTTCTTGTATTTTCTTCTGCTCTTTTTCAACTC
TCTGCTTCATCTTCTCTTCACTCCTGTTTGTTTTTTTTTGTACGTTTACGATGCGTAACA
GCAGTTAGGCACACCACCATGCTCCACACATTCACGCACAGGAAAAACACACGAAACGTT
GTACCAAAAACAAAAACGGCAACATGCTCGGGAGGGTGTCCGGGAAAAATGTTGTTGGCT
GTTTCCCTTCGGAATCGGGCGCAATAGCGATACCGCAGAACAACTGCATCCCTTTGCGAT
CCATCCCCGAAGCACTCCGAGCATGTAACGTCGGTTTGTGTTTCCAAGACCCTTACAGAC
TTAAGCCCGCAGCACGCAAGCACCACCGGCGGCCTTTATGCGCTCCTCGGCCAGGGGGGA
AAAGAATTTCGCCTTCACGATGATCGGGCCGCAAGTTTTCGGGAGTTCACCGGATCCGAG
CAGCTTGAAGTAACCGAACTGGACCAGAACAACCACCGGCACCTTCTCGGGGTTCTTCTT
CGCCTCCCCGCGCACCTTCTCCGGCACCAGGTTCCACAAATGTAAAAAGTTAATGGTCGG
GCAGAACTTGTGGTTTCGGTTAAGGTGGAAGTTTCGCATACCGACCTTGCCGAAGTAACC
CGGATGGTATTTGTCGAAGTTGAAACGGTGATGGTGCATACCACCAGCTTTACCGCGACC
CCCAGGATGCTTAC

consensusID : consensus_6407#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 669
fasta sequence

                              [TTTTTTTGTGCTATCCCAACCATCTAGTTTCTGCCAGTGTGGTGCTACTGTTGGCAGCTGCCGTGCTTGCCGACGTTCGCTGCCCACCGCAGGACGATCCGGAGCAACCGCCCGTCCTGCTAGCGCATCCCACCGATTGTGACAAGTTCCTGATCTGCAACCACGGAACGCCCGTCGTCAGCAAGTGTCCACCCGGGTTGCTGTGGAATGACTCCCAGAAGCAGTGCGACTACCCCGCGCAGGCACAGTGCGCACCGGGTGTGACGCCCAACACTGAACCCGCTTCCAAACCGTCACCCAACTGTCCGCCCGAATACGATCCCGACCATATGGTGTACATTCCGCACGAAACTGACTGTGGGAAGTATTACATTTGCGATCCGTACGGCGTTGAGCTGGAGCAGACGTGCCCTTCCGGGTTGCACTGGAATCCGGTCGTTAACTATTGCGACTTCCCAGAGTTGGCGCAGTGTGAAGAGTGAAGTATCGCTCAAAGTGCTCGAGCTGTTCGCCAATCGACATCGCCAAGCTGTGCTTGAAGTGTGCCACTGTGGCTAAGTAGTTGTAAGAAAAATCCCCTTCTCAACAACCACAACAAGGAATGGGGGTTTCTTCTCGTGTCGATATCAGGTACTTGAGACGGAGTCGAAGACATGATCGGTCACGCTG]

[+] EMBL BX625330             [TTTTTTTGTGCTATCCCAACCATCTAGTTTCTGCCAGTGTGGTGCTACTGTTGGCAGCTGCCGTGCTTGCCGACGTTCGCTGCCCACCGCAGGACGATCCGGAGCAACCGCCCGTCCTGCTAGCGCATCCCACCGATTGTGACAAGTTCCTGATCTGCAACCACGGAACGCCCGTCGTCAGCAAGTGTCCACCCGGGTTGCTGTGGAATGACTCCCAGAAGCAGTGCGACTACCCCGCGCAGGCACAGTGCGCACCGGGTGTGACGCCCAACACTGAACCCGCTTCCAAACCGTCACCCAACTGTCCGCCCGAATACGATCCCGACCATATGGTGTACATTCCGCACGAAACTGACTGTGGGAAGTATTACATTTGCGATCCGTACGGCGTTGAGCTGGAGCAGACGTGCCCTTCCGGGTTGCACTGGAATCCGGTCGTTAACTATTGCGACTTCCCAGAGTTGGCGCAGTGTGAAGAGTGAAGTATCGCTCAAAGTGCTCGAGCTGTTCGCCAATCGACATCGCCAAGCTGTGCTTGAAGTGTGCCACTGTGGCTAAGTAGTTGTAAGAAAAATCCCCTTCTCAACAACCACAACAAGGAATGGGGGTTTCTTCTCGTGTCGATATCAGGTACTTGAGACGGAGTCGAAGACATGATCGGTCACGCTG]




>consensus_6407#1
TTTTTTTGTGCTATCCCAACCATCTAGTTTCTGCCAGTGTGGTGCTACTGTTGGCAGCTG
CCGTGCTTGCCGACGTTCGCTGCCCACCGCAGGACGATCCGGAGCAACCGCCCGTCCTGC
TAGCGCATCCCACCGATTGTGACAAGTTCCTGATCTGCAACCACGGAACGCCCGTCGTCA
GCAAGTGTCCACCCGGGTTGCTGTGGAATGACTCCCAGAAGCAGTGCGACTACCCCGCGC
AGGCACAGTGCGCACCGGGTGTGACGCCCAACACTGAACCCGCTTCCAAACCGTCACCCA
ACTGTCCGCCCGAATACGATCCCGACCATATGGTGTACATTCCGCACGAAACTGACTGTG
GGAAGTATTACATTTGCGATCCGTACGGCGTTGAGCTGGAGCAGACGTGCCCTTCCGGGT
TGCACTGGAATCCGGTCGTTAACTATTGCGACTTCCCAGAGTTGGCGCAGTGTGAAGAGT
GAAGTATCGCTCAAAGTGCTCGAGCTGTTCGCCAATCGACATCGCCAAGCTGTGCTTGAA
GTGTGCCACTGTGGCTAAGTAGTTGTAAGAAAAATCCCCTTCTCAACAACCACAACAAGG
AATGGGGGTTTCTTCTCGTGTCGATATCAGGTACTTGAGACGGAGTCGAAGACATGATCG
GTCACGCTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6407#0      TTTTTTTTGACGTGTTTAAAATATTGGTTTCTTGTATTTTCTTCTGCTCTTTTTCAACTC 60
consensus_6407#1      -TTTTTTTGTGCTATCCCAACCATC---------TAGTTTCTGCCAGTGTGGTGCTACTG 50
                       ********   * *   **  **          ** ***** *   * *  * * *** 

consensus_6407#0      TCTGCTTCATCTTCTCTTCACTCCTGTTTGTTTTTTTTTGTACGTTTACGATGCGTAACA 120
consensus_6407#1      TTGGCAGC-TGCCGTGCTTGCCGACGTTCGCTGCCCACCGCAGG---ACGATCCGGAGCA 106
                      *  **  * *    *  *  *    *** * *       * * *   ***** ** * **

consensus_6407#0      GCAGTTAGGCACACCACCATGCTCCACACATT----CACGCACAGGAAAAACA--CACGA 174
consensus_6407#1      ACCGCCCGTCCTGCTAGCGCATCCCACCGATTGTGACAAGTTCCTGATCTGCAACCACGG 166
                       * *   * *   * * *     ****  ***    ** *  *  **    **  **** 

consensus_6407#0      AACGTTGTACCAAAAACAAAAACGGCAACATGCT-CGGGAGGGTGTCCGGGAAAAATGTT 233
consensus_6407#1      AACGCC-CGTCGTCAGCAAGTGTCCACCCGGGTTGCTGTGGAATGACTCCCAGAAGCAGT 225
                      ****      *   * ***         *  * * * *  *  ** *    * **    *

consensus_6407#0      GTTGGCTGTTTCCCTTCGGAATCGGGCGCAATAGCGATACCGCAGAACAACTGCATCCCT 293
consensus_6407#1      GC-GACTACCCCGCGCAGGCACAGTGCGCACCGGGTGTGACGCCCAACA-CTGAACCCGC 283
                      *  * **    * *   ** *  * *****   *   *  ***  **** *** * **  

consensus_6407#0      TTGCGATCCATCCCCGAAGCACTC-CGAGCATGTAACGTCGGTTTGTGTTTCCAAGACCC 352
consensus_6407#1      TTCCAAACCGTCACCCAACTGTCCGCCCGAATACGATCCCGACCATATGGTGTACATTCC 343
                      ** * * ** ** ** **     * *  * **   *   **         *  *    **

consensus_6407#0      TTACAGACTTAAGCCCGCAGCACGCAAGCACCACCGGCGGCCTTTATGCGCTCCTCGGCC 412
consensus_6407#1      GCACGAAACTGACTGTG------GGAAGTATTACATTTGCGATCCGTACGGCGTTGAGCT 397
                        **  *  * *    *      * *** *  **    *   *   * **    *  ** 

consensus_6407#0      AGGGGGGAAAAGAATTTC--GCCTTCACGATGATCGGGCCGCAAGTTTTCGGGAGTTCAC 470
consensus_6407#1      GGAGCAGACGTGCCCTTCCGGGTTGCACTGGAATCCGGTCGTTAACTATTGCGACTTCCC 457
                       * *  **   *   ***  *  * ***    *** ** **  *  * * * ** *** *

consensus_6407#0      CGGATCCGAGCAGCTTGAAGTAACCGAACTGGACCAGAACAACCACCGGCACCTTCTCGG 530
consensus_6407#1      AGAGTTGGCGCAGTGTGAAGAGTGAAGTATCGCTCAAAGTGCTCG-----AGCTGTTCGC 512
                       *  *  * ****  *****         * *  ** *     *      * **  *** 

consensus_6407#0      GGTTCTTCTTCGCCTCCCCGCGCACCTTCTCCGGCACCA-GGTTCCACAAATGTAAAAAG 589
consensus_6407#1      CAATCGACATCGCCAAGCTGTGCTTGAAGTGTGCCACTGTGGCTAAGTAGTTGTAAGAA- 571
                         **  * *****   * * **      *  * ***   ** *    *  ***** ** 

consensus_6407#0      TTAATGGTCGGGCAGAACTTGTGGTTTCGGTTAAGGTGGAAGTTTCGCATACCGACCTTG 649
consensus_6407#1      --AAATCCCCTTCTCAACAACCACAACAAGGAATGGGGGTTTCTTCTCGTGTCGATATC- 628
                        **    *   *  ***           *  * ** **    *** * *  ***  *  

consensus_6407#0      CCGAAGTAACCCGGATGGTATTTGTCGAAGTTGAAA-CGGTGATGGTGCATACCACCAGC 708
consensus_6407#1      ---AGGTACTTGAGACGGA----GTCGAAGACATGATCGGTCACGCTG------------ 669
                         * ***     ** **     *******     * **** * * **            

consensus_6407#0      TTTACCGCGACCCCCAGGATGCTTAC 734
consensus_6407#1      --------------------------