cluster # 6409

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Anopheles gambiae
cluster # 6409 cluster # 6409 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6409#0 length = 834 sequences # 4

consensus_6409#1 length = 664 sequences # 1

consensusID : consensus_6409#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 834
fasta sequence

                              [GGGTCTCACCGGTGCCCAAACGTCCATTGACCCTGCTGCACTGGAAGCGTCTGCCAGAGATGTATTGAATCTTGCAGCATCACGTACAATGGCAGTATTAGAACCTCTGAAGATTACTATACTTGATTATCCGCATGACGGGCCAATTCAACTATCAGTGCCCAATTTTCCAAACGTGCCGGAGAAAGGCGAGCACATGATTTGGTTCGATCGTGTTGTATATATAGAGCGAACCGATTTCATGGAAAATGCTGACAAATCTTTCCGTCGACTAACGCCAGGACAACCGGTTGGACTGAAATACATTGGTTCCATGCTTAGAGTAGAAAGTGTTGTTCGAAAATCGGGCACCGTCGAGGAACTAGTATGTCGCATAGAACCGTGTACTGCAACCGAAAAACCTAAAGCGTATGTACACTGGGTAGCTAAACCCTGTCCAGTAGAGGTACGTTTGTATGAGAAGCTGTTTATGCACAAGAACCCAGAAGACAGTAACGATGTTCCCAATGGGTTTTTGAGCGACTGTGCTTCGGACACGATTCGTTCACTGTGCGGCTATGTCGATGCACATGTCATGAACAGTAAAGTGTACGATAAATATCAATTCGAACGCATTGGTTACTTCTCCGTGGATCCGGATAGCAGAAACGGCCAGCTTGTTTTCAATCGTACCGTCACGCTTAAAGAAGATACTGGGTTAAAATATTTAGATTGACAAATCAAGCCCGTTTCAATCTTGCAGTCATTATGATACGATTGGAGCAAATATTAAACCAGTTATGGAGATGTTTGCATGTGGTGAATGCTACAATAATAGAAAGAAAAGAAAAATGT]

[+] EMBL BX617581             [GGGTCTCACCGGTGCCCAAACGTCCATTGACCCTGCTGCACTGGAAGCGTCTGCCAGAGATGTATTGAATCTTGCAGCATCACGTACAATGGCAGTATTAGAACCTCTGAAGATTACTATACTTGATTATCCGCATGACGGGCCAATTCAACTATCAGTGCCCAATTTTCCAAACGTGCCGGAGAAAGGCGAGCACATGATTTGGTTCGATCGTGTTGTATATATAGAGCGAACCGATTTCATGGAAAATGCTGACAAATCTTTCCGTCGACTAACGCCAGGACAACCGGTTGGACTGAAATACATTGGTTCCATGCTTAGAGTAGAAAGTGTTGTTCGAAAATCGGGCACCGTCGAGGAACTAGTATGTCGCATAGAACCGTGTACTGCAACCGAAAAACCTAAAGCGTATGTACACTGGGTAGCTAAACCCTGTCCAGTAGAGGTACGTTTGTATGAGAAGCTGTTTATGCACAAGAACCCAGAAGACAGTAACGATGTTCCCAATGGGTTTTTGAGCGACTGTGCTTCGGACACGATTCGTTCACAGTGCGGCTATGTCGATGCACATGTCATGAACAGTAAAGTGTACGATAAATATCAATTCGAACGCATTGGTTACTTCTCCGTGGATCCGGATAGCAGAAACGGCCAGCTTGTTTTCAATCGTACCGTCACGCTTAAAGAAGATACTGGGTTAAAATATTTAGATTGACAAATC                                                                                                                 ]
[+] EMBL BM590138             [                                                                                                                                                                                                                                ccGAGCGAACCGATTTCATGGAAAATGCTGACAAATCTTTCCGTCGACTAACGCCAGGACAACCGGTTGGACTGAAATACATTGGTTCCATGCTTATAGTAAAAAGTGTTGTTCGAAAATCGGGCACCGTCGAGGAACTAGTATGTCGCATAGAGCCGTGTACTGCAACCGAAAAACCTAAAGCGTATGTACACTGGGTATCTAAACCCTGTCCAGTAGAGGTACGTTTGTATGAGAAGCTGTTTATGCACAAGAACCCAGAAGACAGTAACGATGTTCCCAATGGGTTTTTGAGCGACTGTGCTTCGGACACGATTCGTTCACTGTGCGGCTATGTCGATGCACATGTCATGAACAGTAAAGTGTACGATAAATATCAATTCGAACGCATTGGTTACTTCTCCGTGGATCCGGATAGCAGAAACGGCCAGCTTGTTTTCAATCGTACCGTCACGCTTAAAGAAGATACTGG                                                                                                                                          ]
[+] EMBL BX612310             [                                                                                                                                                                                                                                            ATTTCATGGAAAATGCTGACAAATCTTTCCGTCGACTAACGCCAGGACAGCCGGTTGGACTGAAATACATTGGTTCCATGCTTAGAGTAGAAAGTGTTGTTCGAAAATCGGGCACCGTCGAGGAACTAGTATGTCGCATAGAACCGTGTACTGCAACCGAAAAACCTAAAGCGTATGTACACTGGGTAGCTAAACCCTGTCCAGTAGAGGTACGTTTGTATGAGAAGCTGTTTATGCACAAGAACCCAGAAGACAGTAACGATGTTCCCAATGGGTTTTTGAGCGACTGTGCTTCGGACACGATTCGTTCACTGTGCGGCTATGTCGATGCACATGTCATGAACAGTAAAGTGTACGATAAATATCAATTCGAACGCATTGGT   TTCTCCGTGGATCCGGATAGCAGAAACGGCCAGCTTGTTTTCAATCGTACCGTCACGCTTAAAGAAGATACT GGTAAAAATATTTAGATTGACAAATCAAGCCCGTTTCAATCTTGCAGTCATTATGATACGATTGGAGCAAATATTAAACCAGTTATGGAGATGTTTGCATGTGGTGAATGCTACAATAATAGAAAGAAAAGAAAAATGT]
[+] EMBL BX616381             [                                                                                                                                                                                                                                                                                          ACAGCCGGTTGGACTGAAATACATTGGTTCCATGCTTAGAGTAGAAAGTGTTGTTCGAAAATCGGGCACCGTCGAGGAACTAGTATGTCGCATAGAGCCGTGTACTGCAACCGAAAAACCTAAAGCGTATGTACACTGGGTAGCTAAACCCTGTCCAGTAGAGGTACGTTTGTATGAGAAGCTGTTTATGCACAAGAACCCAGAAGACAGTAACGATGTTCCCAATGGGTTTTTGAGCGACTGTGCTTCGGACACGATTCGTTCGCTGTGCGGCTATGTCGATGCACATGTCATGAACAGTAAAGTGTACGATAAATATCAATTCGAACGCATTGGTTACTTCTCCGTGGATCCGGATAGCAGAAACGGCCAGC                                                                                                                                                                                  ]




>consensus_6409#0
GGGTCTCACCGGTGCCCAAACGTCCATTGACCCTGCTGCACTGGAAGCGTCTGCCAGAGA
TGTATTGAATCTTGCAGCATCACGTACAATGGCAGTATTAGAACCTCTGAAGATTACTAT
ACTTGATTATCCGCATGACGGGCCAATTCAACTATCAGTGCCCAATTTTCCAAACGTGCC
GGAGAAAGGCGAGCACATGATTTGGTTCGATCGTGTTGTATATATAGAGCGAACCGATTT
CATGGAAAATGCTGACAAATCTTTCCGTCGACTAACGCCAGGACAACCGGTTGGACTGAA
ATACATTGGTTCCATGCTTAGAGTAGAAAGTGTTGTTCGAAAATCGGGCACCGTCGAGGA
ACTAGTATGTCGCATAGAACCGTGTACTGCAACCGAAAAACCTAAAGCGTATGTACACTG
GGTAGCTAAACCCTGTCCAGTAGAGGTACGTTTGTATGAGAAGCTGTTTATGCACAAGAA
CCCAGAAGACAGTAACGATGTTCCCAATGGGTTTTTGAGCGACTGTGCTTCGGACACGAT
TCGTTCACTGTGCGGCTATGTCGATGCACATGTCATGAACAGTAAAGTGTACGATAAATA
TCAATTCGAACGCATTGGTTACTTCTCCGTGGATCCGGATAGCAGAAACGGCCAGCTTGT
TTTCAATCGTACCGTCACGCTTAAAGAAGATACTGGGTTAAAATATTTAGATTGACAAAT
CAAGCCCGTTTCAATCTTGCAGTCATTATGATACGATTGGAGCAAATATTAAACCAGTTA
TGGAGATGTTTGCATGTGGTGAATGCTACAATAATAGAAAGAAAAGAAAAATGT

consensusID : consensus_6409#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 664
fasta sequence

                              [GAATCCCCCGAGGTTAATCGTGTTGTATATATAGAGCGATCCGATTTCATGGAAAATGCTGACAAATCTTTCCGTCGACTAACGCCAGGACAGCCGGTTGGACTGAAATACATTGGTTCCATGCTTAGAGTAGAAAGTGTTGTTCGAAAATCGGGCACCGTCGAGGAACTAGTATGTCGCATAGAGCCGTGTACTGCAACCGAAAAACCTAAAGCGTATGTACACTGGGTAGCTAAACCTGTCCAGTAGAGGTACGTTTGTATGAGAAGCTGTTTATGCACAAGAACCCAGAAGACAGTAACGATGTTCCCAATGGGTTTTTGAGCGACTGTGCTTCGGACACGATTCGTTTGCTGTGCGGCTATGTCGATGCACATGTCATGAACAGTAAAGTGTACGATAAATATCAATTCGAACGCATTGGTTACTTCTCCGTGGATCCGGATAGCAGAAACGGCAGCTTGTTTTCAATCGTACCGTCACGCTTAACAGAAGATACTGGTAACAACATATTTAGATTGACAAATCAAGCCCGTTTCAATCTTGCAGTTATGATACGATTGGAGCAAATATTAAACCAGTTATGGAGATGTTTGNATGTGGTGAATGCTACAATAATAGAAAGAAAAGAAAAATGTTCGTGAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AL692333             [GAATCCCCCGAGGTTAATCGTGTTGTATATATAGAGCGATCCGATTTCATGGAAAATGCTGACAAATCTTTCCGTCGACTAACGCCAGGACAGCCGGTTGGACTGAAATACATTGGTTCCATGCTTAGAGTAGAAAGTGTTGTTCGAAAATCGGGCACCGTCGAGGAACTAGTATGTCGCATAGAGCCGTGTACTGCAACCGAAAAACCTAAAGCGTATGTACACTGGGTAGCTAAACCTGTCCAGTAGAGGTACGTTTGTATGAGAAGCTGTTTATGCACAAGAACCCAGAAGACAGTAACGATGTTCCCAATGGGTTTTTGAGCGACTGTGCTTCGGACACGATTCGTTTGCTGTGCGGCTATGTCGATGCACATGTCATGAACAGTAAAGTGTACGATAAATATCAATTCGAACGCATTGGTTACTTCTCCGTGGATCCGGATAGCAGAAACGGCAGCTTGTTTTCAATCGTACCGTCACGCTTAACAGAAGATACTGGTAACAACATATTTAGATTGACAAATCAAGCCCGTTTCAATCTTGCAGTTATGATACGATTGGAGCAAATATTAAACCAGTTATGGAGATGTTTGNATGTGGTGAATGCTACAATAATAGAAAGAAAAGAAAAATGTTCGTGAAAAAAAAAAAAAAAAAAAAA]




>consensus_6409#1
GAATCCCCCGAGGTTAATCGTGTTGTATATATAGAGCGATCCGATTTCATGGAAAATGCT
GACAAATCTTTCCGTCGACTAACGCCAGGACAGCCGGTTGGACTGAAATACATTGGTTCC
ATGCTTAGAGTAGAAAGTGTTGTTCGAAAATCGGGCACCGTCGAGGAACTAGTATGTCGC
ATAGAGCCGTGTACTGCAACCGAAAAACCTAAAGCGTATGTACACTGGGTAGCTAAACCT
GTCCAGTAGAGGTACGTTTGTATGAGAAGCTGTTTATGCACAAGAACCCAGAAGACAGTA
ACGATGTTCCCAATGGGTTTTTGAGCGACTGTGCTTCGGACACGATTCGTTTGCTGTGCG
GCTATGTCGATGCACATGTCATGAACAGTAAAGTGTACGATAAATATCAATTCGAACGCA
TTGGTTACTTCTCCGTGGATCCGGATAGCAGAAACGGCAGCTTGTTTTCAATCGTACCGT
CACGCTTAACAGAAGATACTGGTAACAACATATTTAGATTGACAAATCAAGCCCGTTTCA
ATCTTGCAGTTATGATACGATTGGAGCAAATATTAAACCAGTTATGGAGATGTTTGNATG
TGGTGAATGCTACAATAATAGAAAGAAAAGAAAAATGTTCGTGAAAAAAAAAAAAAAAAA
AAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6409#0      GGGTCTCACCGGTGCCCAAACGTCCATTGACCCTGCTGCACTGGAAGCGTCTGCCAGAGA 60
consensus_6409#1      ------------------------------------------------------------
                                                                                  

consensus_6409#0      TGTATTGAATCTTGCAGCATCACGTACAATGGCAGTATTAGAACCTCTGAAGATTACTAT 120
consensus_6409#1      ------------------------------------------------------------
                                                                                  

consensus_6409#0      ACTTGATTATCCGCATGACGGGCCAATTCAACTATCAGTGCCCAATTTTCCAAACGTGCC 180
consensus_6409#1      ------------------------------------------------------------
                                                                                  

consensus_6409#0      GGAGAAAGGCGAGCACATGATTTG-GTTCGATCGTGTTGTATATATAGAGCGAACCGATT 239
consensus_6409#1      --------------GAATCCCCCGAGGTTAATCGTGTTGTATATATAGAGCGATCCGATT 46
                                      **     * * *  *********************** ******

consensus_6409#0      TCATGGAAAATGCTGACAAATCTTTCCGTCGACTAACGCCAGGACAACCGGTTGGACTGA 299
consensus_6409#1      TCATGGAAAATGCTGACAAATCTTTCCGTCGACTAACGCCAGGACAGCCGGTTGGACTGA 106
                      ********************************************** *************

consensus_6409#0      AATACATTGGTTCCATGCTTAGAGTAGAAAGTGTTGTTCGAAAATCGGGCACCGTCGAGG 359
consensus_6409#1      AATACATTGGTTCCATGCTTAGAGTAGAAAGTGTTGTTCGAAAATCGGGCACCGTCGAGG 166
                      ************************************************************

consensus_6409#0      AACTAGTATGTCGCATAGAACCGTGTACTGCAACCGAAAAACCTAAAGCGTATGTACACT 419
consensus_6409#1      AACTAGTATGTCGCATAGAGCCGTGTACTGCAACCGAAAAACCTAAAGCGTATGTACACT 226
                      ******************* ****************************************

consensus_6409#0      GGGTAGCTAAACCCTGTCCAGTAGAGGTACGTTTGTATGAGAAGCTGTTTATGCACAAGA 479
consensus_6409#1      GGGTAGCTAAACC-TGTCCAGTAGAGGTACGTTTGTATGAGAAGCTGTTTATGCACAAGA 285
                      ************* **********************************************

consensus_6409#0      ACCCAGAAGACAGTAACGATGTTCCCAATGGGTTTTTGAGCGACTGTGCTTCGGACACGA 539
consensus_6409#1      ACCCAGAAGACAGTAACGATGTTCCCAATGGGTTTTTGAGCGACTGTGCTTCGGACACGA 345
                      ************************************************************

consensus_6409#0      TTCGTTCACTGTGCGGCTATGTCGATGCACATGTCATGAACAGTAAAGTGTACGATAAAT 599
consensus_6409#1      TTCGTTTGCTGTGCGGCTATGTCGATGCACATGTCATGAACAGTAAAGTGTACGATAAAT 405
                      ******  ****************************************************

consensus_6409#0      ATCAATTCGAACGCATTGGTTACTTCTCCGTGGATCCGGATAGCAGAAACGGCCAGCTTG 659
consensus_6409#1      ATCAATTCGAACGCATTGGTTACTTCTCCGTGGATCCGGATAGCAGAAACGGC-AGCTTG 464
                      ***************************************************** ******

consensus_6409#0      TTTTCAATCGTACCGTCACGCTTAA-AGAAGATACTGG-GTTAAAATATTTAGATTGACA 717
consensus_6409#1      TTTTCAATCGTACCGTCACGCTTAACAGAAGATACTGGTAACAACATATTTAGATTGACA 524
                      ************************* ************    ** ***************

consensus_6409#0      AATCAAGCCCGTTTCAATCTTGCAGTCATTATGATACGATTGGAGCAAATATTAAACCAG 777
consensus_6409#1      AATCAAGCCCGTTTCAATCTTGCAG---TTATGATACGATTGGAGCAAATATTAAACCAG 581
                      *************************   ********************************

consensus_6409#0      TTATGGAGATGTTTGCATGTGGTGAATGCTACAATAATAGAAAGAAAAGAAAAATGT--- 834
consensus_6409#1      TTATGGAGATGTTTGNATGTGGTGAATGCTACAATAATAGAAAGAAAAGAAAAATGTTCG 641
                      *************** *****************************************   

consensus_6409#0      -----------------------
consensus_6409#1      TGAAAAAAAAAAAAAAAAAAAAA 664