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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6414#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 840 fasta sequence
[GAATTGCCATGANGTTGCTGGCAATGGGTACGANGTCTGGTTGAGTTTCCCTGCACTGTGCTGAAAGGCAAACCCGGCCTGTACGANTGCAATGTGCTGCAGCTGTGCTAGATCTTGCTGGTGCCACCTGGAAGCTGGTGCTCGTGCTGCCAAAAGCTGCCAATTCAATGTGTGTTCTGTGTGCTGTCCATGCTCTGAATGCTAATGCTAACTGCCTTCAAACCAGTATTACTGTGCCCTGAACTGGATTTTGGATGCTGATGCTGCTGTGCCAACTGCTGTGTGCTGCACATGTCCTTCTACAACCAGTNGCACCTGGTGTTGTGTTGTGTTTCTGGTGCATCTGGCANGCCAACTCCTGCCTCTGCAATGTGCTTCTCTGTGCCTGTGTCCTGTTGCTGGTATTCTCTGNGCTCCTGCTGGACAGTCCTGGTAGCCAGAGCTACAAGCTTCCCTGGCAACAAGNGACGTGAACCTGTCGCTACATGTGNGTGGATTTTCCGCTCGCCAACGCGCCAGCCCCAGCGCTATCGCAGCGGCAGCTCGCATCAGCTTCTCGCAAGCAAGTANACTANCAGCACACTACAGCGCCTGCAACGACGCACCAACNACACCACCGGCAACCAACCCGGCACACAACCGAAGCCCTGGGACCCAACTTGACCCTCCGCCGCGCCACTTANAAACCCTAACACGCTTGCACCCGCCGNCAACCAACGGCACACCCCNACTCACACCTTGCTCCTCCCGCCNCCCACACCTGGCGCACACCCTACCCCCNGCTTGCTCCTCCCCTGCCCCCTCCACCNACCCCCCCACACACCCACACACCANCCANAC]
[+] EMBL AL931843 [GAATTGCCATGANGTTGCTGGCAATGGGTACGANGTCTGGTTGAGTTTCCCTGCACTGTGCTGAAAGGCAAACCCGGCCTGTACGANTGCAATGTGCTGCAGCTGTGCTAGATCTTGCTGGTGCCACCTGGAAGCTGGTGCTCGTGCTGCCAAAAGCTGCCAATTCAATGTGTGTTCTGTGTGCTGTCCATGCTCTGAATGCTAATGCTAACTGCCTTCAAACCAGTATTACTGTGCCCTGAACTGGATTTTGGATGCTGATGCTGCTGTGCCAACTGCTGTGTGCTGCACATGTCCTTCTACAACCAGTNGCACCTGGTGTTGTGTTGTGTTTCTGGTGCATCTGGCANGCCAACTCCTGCCTCTGCAATGTGCTTCTCTGTGCCTGTGTCCTGTTGCTGGTATTCTCTGNGCTCCTGCTGGACAGTCCTGGTAGCCAGAGCTACAAGCTTCCCTGGCAACAAGNGACGTGAACCTGTCGCTACATGTGNGTGGATTTTCCGCTCGCCAACGCGCCAGCCCCAGCGCTATCGCAGCGGCAGCTCGCATCAGCTTCTCGCAAGCAAGTANACTANCAGCACACTACAGCGCCTGCAACGACGCACCAACNACACCACCGGCAACCAACCCGGCACACAACCGAAGCCCTGGGACCCAACTTGACCCTCCGCCGCGCCACTTANAAACCCTAACACGCTTGCACCCGCCGNCAACCAACGGCACACCCCNACTCACACCTTGCTCCTCCCGCCNCCCACACCTGGCGCACACCCTACCCCCNGCTTGCTCCTCCCCTGCCCCCTCCACCNACCCCCCCACACACCCACACACCANCCANAC]
consensusID : consensus_6414#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 768 fasta sequence
[CCGCCCACGCGTCCGAACGCGTGTGACCGGTAGTGTTAACAAATAATCCACCCTGTGTGTGTGAGTAAGCGATGAACAGATTCGTTGGCGTGATCATACTTTCGGCACTGGTGATCGGTGCCTTAGGTCAGAACGATGGCCGCGATGCTGAGGTGAGAGATCGCGCCGGCAATGGGTACGAGGTCCTGGTCGAGTCTTCCCTGCACGTGCGAAAGGCAAACCCGGCCGTACGACGCAACGTGCGCAGCGTGCTAGATCTGCTGGTGCCACCGGAAGCGGTGCTCGTGCGCCAAAAGCGCCAATTCAATGGGTTCGGTGCGTCCAGCTCGAATGCTAATGCTAACGCCTTCAACCAGTATTACGGCCCGAACGGATTTGGAGCGAGCGCGGCCAACGCGGGCGCACAGTCCTTCTACAACCAGGGACCGGGTGGTGGTTTCGGTGCATCGGCAGCCAACTCCGCCTCGCAAGGCTTCTCGGCCGGTCCGGGCGGTTTCTCTGGCTCCGCTGGACAGTCCGGTAGCCAGAGCTACAAGCTTCCCGGCAACAAGGACGTGAACCTGTCGTACAGTGGTGGATTTTCCGTCGCCAACGGCCAGCCCAGCGTATCGCAGGGCAGCTCGATCAGCTTCTCGAAGAAGTAGACTAGCAGCACACTACAGCGCTGAACGACGACAACAAACACGGCAACACGAAACGAGCGGACAATGACTCGGGATAGAACTAAGTGCACGCGAGAGGAACCTTAATGTCTCGGCAATGGAAATN]
[+] EMBL BM590086 [CCGCCCACGCGTCCGAACGCGTGTGACCGGTAGTGTTAACAAATAATCCACCCTGTGTGTGTGAGTAAGCGATGAACAGATTCGTTGGCGTGATCATACTTTCGGCACTGGTGATCGGTGCCTTAGGTCAGAACGATGGCCGCGATGCTGAAGTGAGAGATCGCGCCGGCAATGGGTACGAGGTCCTGGTCGAGTCGTCCCTGCACGTGCGAAAGGCAAACCCGGCCGTTCGACGCAACGTGCGCAGCGTGCTAGATCTGCTGGTGCCACCGGAAGCGGTGCTCGTGCGCCAAAAGCGCCAATTCAATGGGTTCGGTGCGTCCAGCTCGAATGCTAATGCTAACGCCTTCAACCAGTATTACGGCCCGAACGGATTTGGGGCGAGCGCGGCCAACGCGGGCGCACAGTCCTTCTACAACCAGGGACCGGGTGGTGGTTTCGGTGCATCGGCAGCCAACTCCGCCTCGCAAGGCTTCTCGGCCGGTCCGGGCGGTTTCTCGGGCTCCGCTGGACAGTCCGGTAGCCAGAGCTACAAGCTTCCCGGCAACAAGGACGTGAACCTGTCGTACAGTGGTGGATTTTCCGTCGCCAACGG ]
[+] EMBL BM654858 [ ccgGTGTGAGTGAACGATGAACAGATTCGTTGGAGTGATCATACTTTCGGCACTGGTGATCGGTGCCTTAGGTCAGAACGATGGCCGCGATGCTGAGGTGAGAGATCGCGCCGGCAATGGGTACGAGGTCCTGGTCGAGTCTTCCCTGCACGTGCGAAAGGCAAACCCGGCCGTACGACGCAACGTGCGCAGCGTGCTAGATCTGCTGGTGCCACCGGAAGCGGTGCTCGTGCGCCAAAAGCGCCAATTCAATGGGTTCGGTGCGTCCAGCTCGAATGCTAATGCTAACGCCTTCAACCAGTATTACGGCCCGAACGGATTTGGAGCGAGCGCGGCCAACGCGGGCGCACAGTCCTTCTACAACCAGGGACCGGGTGGTGGTTTCGGTGCATCGGCAGCCAACTCCGCCTCGCAAGGCTTCTCGGCCGGTCCGGGCGGTTTCTCTGGCTCCGCTGGACAGTCCGGTAGCCAGAGCTACAAGCTTCCCGGCAACAAGGACGTGAACCTGTCGTACAGTGGTGGATTTTCCGTCGCCAACGGCCAGCCCAGCGTATCGCAGGGCAGCTCGATCAGCTTCTCGAAGAAGTAGACTAGCAGCACACTACAGCGCTGAACGACGACAA ]
[+] EMBL BX621242 [ AGAACGATGGCCGCGATGCTGAGGTGAGAGATCGCGCCGGCAATGGGTACGAGGTCCTGGTCGAGTCTTCCCTGCACGTGCGAAAGGCAAACCCGGCCGTACGACGCAACGTGCGCAGCGTGCTAGATCTGCTGGTGCCACCGGAAGCGGTGCTCGTGCGCCAAAAGCGCCAATTCAATGGGTTCGGTGCGTCCAGCTCGAATGCTAATGCTAACGCCTTCAACCAGTATTACGGCCCGAACGGATTTGGAGCGAGCGCGGCCAACGCGGGCGCACAGTCCTTCTACAACCAGGGACCGGGTGGTGGTTTCGGTGCATCGGCAGCCAACTCCGCCTCGCAAGGCTTCTCGGCCGGTCCGGGCGGTTTCTCTGGCTCCGCTGGACAGTCCGGTAGCCAGAGCTACAAGCTTCCCGGCAACAAGGACGTGAACCTGTCGTACAGTGGTGGATTTTCCGTCGCCAACGGCCAGCCCAGCGTATCGCAGGGCAGCTCGATCAGCTTCTCGAAGAAGTAGACTAGCAGCACACTACAGCGCTGAACGACGACAACAAACACGGCAACACGAAACGAGCGGACAATGACTCGGGATAGAACTAAGTGCACGCGAGAGGAACCTTAATGTCTCGGCAATGGAAATN]
consensusID : consensus_6414#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 577 fasta sequence
[GAGTTACCCAAGTCGATTGAATTTTATTTGATTTTTGCGTTGATTTGGCCTTTTCCGAAGTGTGTGTAAATAAAACAAAACCCAACCAACTTGTTTGCATGTTTGAAGGATGTCGTAAGCAATCCACACCCTACCCTCTGAGCCAACGGGTCAGCGAAGATCATTACCATAACAGTGGAAGAGCCTTCCATTTTGTTGGTTTTTTTGCGCCTTTCCTTCCCTTTTCTTCAATTCGACTTAATTAAAGCTTAACATCTTCTTAACATCATCTCATTTTCAGATGCTGAGGTGAGAGATCGCGCCGGCAATGGGTACGAGGTCCTGGTCGAGTCTTCCCTGCACGTGCGAAAGGCAAACCCGGCCGTACGACGCAACGTGCGCAGCGTGCTAGATCTGCTGGTGCCACCGGAAGCGGTGCTCGTGCGCCAAAAGCGCCAATTCAAGTAAGCTCCCAAACCCACTCCAATGTGTACGTTTCTTTCTCCCCAAAAGAACTCCCCATTTTTACCGCTGACCTTGAGAGAGGGTGCTCCATCCGAATGAGGGTGGTGTCCGTTTGTTCATTGTGCATGCTGAT]
[+] EMBL BX603085 [GAGTTACCCAAGTCGATTGAATTTTATTTGATTTTTGCGTTGATTTGGCCTTTTCCGAAGTGTGTGTAAATAAAACAAAACCCAACCAACTTGTTTGCATGTTTGAAGGATGTCGTAAGCAATCCACACCCTACCCTCTGAGCCAACGGGTCAGCGAAGATCATTACCATAACAGTGGAAGAGCCTTCCATTTTGTTGGTTTTTTTGCGCCTTTCCTTCCCTTTTCTTCAATTCGACTTAATTAAAGCTTAACATCTTCTTAACATCATCTCATTTTCAGATGCTGAGGTGAGAGATCGCGCCGGCAATGGGTACGAGGTCCTGGTCGAGTCTTCCCTGCACGTGCGAAAGGCAAACCCGGCCGTACGACGCAACGTGCGCAGCGTGCTAGATCTGCTGGTGCCACCGGAAGCGGTGCTCGTGCGCCAAAAGCGCCAATTCAAGTAAGCTCCCAAACCCACTCCAATGTGTACGTTTCTTTCTCCCCAAAAGAACTCCCCATTTTTACCGCTGACCTTGAGAGAGGGTGCTCCATCCGAATGAGGGTGGTGTCCGTTTGTTCATTGTGCATGCTGAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6414#0 ------------------------------------------------------------
consensus_6414#1 CCGCCCACGCGTCCGAACGCGTGTGACCGGTAGTGTTAACAAATAATCCACCCTGTGTGT 60
consensus_6414#2 ------------------------------------------------------------
consensus_6414#0 ------------------------------------------------------------
consensus_6414#1 GTGAGTAAGCGATGAACAGATTCGTTGGCGTGATCATACTTTCGGCACTGGTGATCGGTG 120
consensus_6414#2 ------------------------------------------------------------
consensus_6414#0 -----------------------------GAATTGCCATGANGTTGCTGGCAATGGGTAC 31
consensus_6414#1 CCTTAGGTCAGAACGATGGCCGCGATGCTGAGGTGAGA-GATCGCGCCGGCAATGGGTAC 179
consensus_6414#2 -----------------------------GAGTTACCC--AAGTCGATTGAATTTTATTT 29
** * * * * * * *
consensus_6414#0 GANGTC-----TGGTTGAGT-TTCCCTGCACTGTGCT----GAAAGGCAAACCCGGCCTG 81
consensus_6414#1 GAGGTCC----TGGTCGAGTCTTCCCTGCAC-GTGC-----GAAAGGCAAACCCGGCC-G 228
consensus_6414#2 GATTTTTGCGTTGATTTGGCCTTTTCCGAAGTGTGTGTAAATAAAACAAAACCCAACCAA 89
** * ** * * ** * * * *** *** ****** **
consensus_6414#0 TACGANTGCAATGTGCTGCAGCTGTGCTAGATCTTGCTGGTGCCACCT-GGAAGCTGGTG 140
consensus_6414#1 TACGAC-GCAACGTGC-GCAGC-GTGCTAGATCT-GCTGGTGCCACC--GGAAGC-GGTG 281
consensus_6414#2 CTTGTTTGCA-TGTTTGAAGGATGTCGTAAGCAATCCACACCCTACCCTCTGAGCCAACG 148
* *** ** * ** ** * * *** *** *
consensus_6414#0 CTCGTGCTGCCAAAAGCTGCCAATTCAATGTGTGTTCTGTGTGCTGTCCATGCTCT-GAA 199
consensus_6414#1 CTCGTGC-GCCAAAAGC-GCCAATTCAATGGGT--TCGGTGCG---TCCA-GCTC--GAA 331
consensus_6414#2 GGTCAGC-GAAGATCATTACCATAACAGTGGAAGAGCCTTCCATTTTGTTGGTTTTTTTG 207
** * * *** ** ** * * * * *
consensus_6414#0 TGCTAATGCTAACT--GCCTTCAAACCAGTATTACTGTGCCCTGAACTGGATTTTGGATG 257
consensus_6414#1 TGCTAATGCTAAC---GCCTTCAA-CCAGTATTAC---GGCCCGAAC-GGATTTGGAGCG 383
consensus_6414#2 CGCCTTTCCTTCCCTTTTCTTCAATTCGACTTAATTAAAGCTTAACATCTTCTTAACATC 267
** * ** * ****** * * * * * **
consensus_6414#0 CTGATGCTGCTGTGCCAACTGCTGTGTGCTGCACATGTCCTTCTACAACCAGTNGCACCT 317
consensus_6414#1 AGCGCG-------GCCAAC----GCGGGC-GCACA-GTCCTTCTACAACCAGGG--ACCG 428
consensus_6414#2 ATCTCATT----TTCAGATGCTGAGGTGAGAGATCGCGCCGGCAATGGGTACGAGGTCCT 323
* * * * * ** * * * **
consensus_6414#0 GGTGTTGTGTTGTGTTTCTGGTGCATCTGGCANGCCAACTCCTGCCTCTGCAATGTGCTT 377
consensus_6414#1 GGTG-------GTGGTTTCGGTGCATC-GGCAG-CCAACTCC-GCCTC-GCAAG--GCTT 475
consensus_6414#2 GGTCGA-----GTCTTCCCTGCACGTGCGAAAGGCAAACCCG-GCCGT-ACGAC--GCAA 374
*** ** * * * * * * * *** * *** * * **
consensus_6414#0 CTCTGTGCCTGTGTCCTGTTGCTGGTATTCTCTGNGCTCCTGCTGGACAGTCCTGGTAGC 437
consensus_6414#1 CTCGG----------CCGGTCCGGGCGGTTTCTCTGGCTCCGCTGGACAGTCC-GGTAGC 524
consensus_6414#2 CGTG-----------CGCAGCGTGCTAGATCTGCTGGTGCCACCGGA-AGCGGTGCTCGT 422
* * * * * * *** ** * * *
consensus_6414#0 CAGAGCTACAAGCTTCCCTGGCAACAAGNGACGTGAACCTGTCGCTACATGTGNGTGGAT 497
consensus_6414#1 CAGAGCTACAAGCTTCCC-GGCAACAAGG-ACGTGAACCTGTCG-TACA-GTGG-TGGAT 579
consensus_6414#2 --GCGCCAAAAGCGCCAATTCAAGTAAGC-TCCCAAACC---CACTCCA-ATGTGTACGT 475
* ** * **** * * *** * **** * * ** ** * *
consensus_6414#0 TTTCCGCTCGCCAACGCGCCAGCCCCAGCGCTATCGCAGCGGCAGCTCGCATCAGCTTCT 557
consensus_6414#1 TTTCCG-TCGCCAACG-GCCAGCCC-AGCG-TATCGCAG-GGCAGCTCG-ATCAGCTTCT 633
consensus_6414#2 TTCTTTCTCCCCAAAAGAACTCCCC-ATTTTTACCGCTGACCTTGAGAGAGGGTGCTCCA 534
** ** **** * *** * ** *** * * * *** *
consensus_6414#0 CGCAAGCAAGTANACTANCAGCACACTACAGCGCCTGCAACGACGCACCAACNACACCAC 617
consensus_6414#1 CGAAG--AAGTAGACTAGCAGCACACTACAGCGCTG--AACGACG-----ACAACAAACA 684
consensus_6414#2 TCCGAATGAGGGTGGTGTCCGTTTGTT-CATTGTGCATGCTGAT---------------- 577
** * * * * ** * **
consensus_6414#0 CGGCAACCAACCCGGCACACAACCGAAGCCCTGGGACCCAACTTGACCCTCCGCCGCGCC 677
consensus_6414#1 CGGCAAC--ACGAAACGAGCGGACAATGACTCGGGATAGAACTAAGTGC------ACGCG 736
consensus_6414#2 ------------------------------------------------------------
consensus_6414#0 ACTTANAAACCCTAACACGCTTGCACCCGCCGNCAACCAACGGCACACCCCNACTCACAC 737
consensus_6414#1 AG--AGGAACCTTAATGTCTCGGCAATGGAAATN-------------------------- 768
consensus_6414#2 ------------------------------------------------------------
consensus_6414#0 CTTGCTCCTCCCGCCNCCCACACCTGGCGCACACCCTACCCCCNGCTTGCTCCTCCCCTG 797
consensus_6414#1 ------------------------------------------------------------
consensus_6414#2 ------------------------------------------------------------
consensus_6414#0 CCCCCTCCACCNACCCCCCCACACACCCACACACCANCCANAC 840
consensus_6414#1 -------------------------------------------
consensus_6414#2 -------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||